Abstract
Under nutrient-limited conditions, the red yeast Rhodosporidium toruloides can accumulate neutral lipids, of which the compositional fatty acids are mainly saturated and mono-unsaturated ones with 16 or 18 carbon atoms. To improve the linoleic acid content in the lipids, we enabled galactose-inducible expression of the gene encoding Δ12-fatty acid desaturase (FADS) from Mortierella alpina or Fusarium verticillioides by integration of the corresponding expression cassettes into the genome of R. toruloides haploid and diploid strains. The relative linoleic acid content increased up to fivefold and the final linoleic acid titer reached 1.3 g/L under flask culture conditions. Our results suggested that R. toruloides may be further explored as cell factory for production of high-valued lipids and other fatty acid derivatives as bio-based chemicals and fuels.
Similar content being viewed by others
References
Aguilar, P. S., & de Mendoza, D. (2006). Control of fatty acid desaturation: a mechanism conserved from bacteria to humans. Molecular Microbiology, 62, 1507–1514.
Clemente, T. E., & Cahoon, E. B. (2009). Soybean oil: genetic approaches for modification of functionality and total content. Plant Physiology, 151, 1030–1040.
Chen, Y., Cui, Q., Xu, Y., Yang, S., Gao, M., & Wang, Y. (2015). Effects of tung oilseed FAD2 and DGAT2 genes on unsaturated fatty acid accumulation in Rhodotorula glutinis and Arabidopsis thaliana. Molecular Genetics and Genomics, 290, 1605–1613.
Sakuradani, E., Kobayashi, M., Ashikari, T., & Shimizu, S. (1999). Identification of Delta12-fatty acid desaturase from arachidonic acid-producing mortierella fungus by heterologous expression in the yeast Saccharomyces cerevisiae and the fungus Aspergillus oryzae. European Journal of Biochemistry, 261, 812–820.
Huang, Y. S., Chaudhary, S., Thurmond, J. M., Bobik Jr., E. G., Yuan, L., Chan, G. M., Kirchner, S. J., Mukerji, P., & Knutzon, D. S. (1999). Cloning of delta12- and delta6-desaturases from Mortierella Alpina and recombinant production of gamma-linolenic acid in Saccharomyces cerevisiae. Lipids, 34, 649–659.
Kainou, K., Kamisaka, Y., Kimura, K., & Uemura, H. (2006). Isolation of Delta12 and omega3-fatty acid desaturase genes from the yeast Kluyveromyces lactis and their heterologous expression to produce linoleic and alpha-linolenic acids in Saccharomyces cerevisiae. Yeast, 23, 605–612.
Yazawa, H., Iwahashi, H., Kamisaka, Y., Kimura, K., & Uemura, H. (2009). Production of polyunsaturated fatty acids in yeast Saccharomyces cerevisiae and its relation to alkaline pH tolerance. Yeast, 26, 167–184.
Dyer, J. M., Chapital, D. C., Kuan, J. W., Mullen, R. T., & Pepperman, A. B. (2002). Metabolic engineering of Saccharomyces cerevisiae for production of novel lipid compounds. Applied Microbiology and Biotechnology, 59, 224–230.
Blazeck, J., Liu, L., Redden, H., & Alper, H. (2011). Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach. Applied and Environmental Microbiology, 77, 7905–7914.
Chen, D. C., Beckerich, J. M., & Gaillardin, C. (1997). One-step transformation of the dimorphic yeast Yarrowia lipolytica. Applied Microbiology and Biotechnology, 48, 232–235.
Fickers, P., Le Dall, M. T., Gaillardin, C., Thonart, P., & Nicaud, J. M. (2003). New disruption cassettes for rapid gene disruption and marker rescue in the yeast Yarrowia lipolytica. Journal of Microbiological Methods, 55, 727–737.
Liu, L. Q., Otoupal, P., Pan, A., & Alper, H. S. (2014). Increasing expression level and copy number of a Yarrowia lipolytica plasmid through regulated centromere function. FEMS Yeast Research, 14, 1124–1127.
Wang, J. H., Hung, W., & Tsai, S. H. (2011). High efficiency transformation by electroporation of Yarrowia lipolytica. Journal of Microbiology, 49, 469–472.
Bommareddy, R. R., Sabra, W., Maheshwari, G., & Zeng, A. P. (2015). Metabolic network analysis and experimental study of lipid production in Rhodosporidium toruloides grown on single and mixed substrates. Microbial Cell Factories, 14, 36.
Lane, S., Zhang, S., Wei, N., Rao, C., & Jin, Y. S. (2014). Development and physiological characterization of cellobiose-consuming Yarrowia lipolytica. Biotechnology and Bioengineering, 112, 1012–1022.
Li, Y. H., Zhao, Z. B., & Bai, F. W. (2007). High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture. Enzyme and Microbial Technology, 41, 312–317.
Kumar, S., Kushwaha, H., Bachhawat, A. K., Raghava, G. P., & Ganesan, K. (2012). Genome sequence of the oleaginous red yeast Rhodosporidium toruloides MTCC 457. Eukaryotic Cell, 11, 1083–1084.
Zhu, Z., Zhang, S., Liu, H., Shen, H., Lin, X., Yang, F., et al. (2012). A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides. Nature Communications, 3, 1112.
Koh, C. M., Liu, Y., Moehninsi, Du, M., & Ji, L. (2014). Molecular characterization of KU70 and KU80 homologues and exploitation of a KU70-deficient mutant for improving gene deletion frequency in Rhodosporidium toruloides. BMC Microbiology, 14, 50.
Lin, X., Wang, Y., Zhang, S., Zhu, Z., Zhou, Y. J., Yang, F., Sun, W., Wang, X., & Zhao, Z. K. (2014). Functional integration of multiple genes into the genome of the oleaginous yeast Rhodosporidium toruloides. FEMS Yeast Research, 14, 547–555.
Liu, Y., Koh, C. M., Sun, L., Hlaing, M. M., Du, M., Peng, N., & Ji, L. (2013). Characterization of glyceraldehyde-3-phosphate dehydrogenase gene RtGPD1 and development of genetic transformation method by dominant selection in oleaginous yeast Rhodosporidium toruloides. Applied Microbiology and Biotechnology, 97, 719–729.
Damude, H. G., Zhang, H., Farrall, L., Ripp, K. G., Tomb, J. F., Hollerbach, D., & Yadav, N. S. (2006). Identification of bifunctional delta12/omega3 fatty acid desaturases for improving the ratio of omega3 to omega6 fatty acids in microbes and plants. Proceedings of the National Academy of Sciences of the United States of America, 103, 9446–9451.
Lazo, G.R., Stein, P.A., Ludwig, R.A. (1991). A DNA transformation competent Arabidopsis genomic library in Agrobacterium. Nat Biotechnol, 9, 963–967.
Bundock, P., den Dulk-Ras, A., Beijersbergen, A., & Hooykaas, P. J. (1995). Trans-kingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. The EMBO Journal, 14, 3206–3214.
Ma, S., Wang, Y., Jiao, X., Zhang, S., & Zhao, Z. K. (2015). Phosphate starvation derepressed expression vector for engineering oleaginous yeast Rhodosporidium toruloides. Acta Microbiologica Sinica, 55, 1505–1511.
Van, D., & Lowe, J. (2006). RF cloning: a restriction-free method for inserting target genes into plasmids. Journal of Biochemical and Biophysical Methods, 67, 67–74.
Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989). Molecular cloning a laboratory manual, 3rd edi, volume 1 (pp. 91–92). BeiJing: Science Press.
Wang, Y., Lin, X., Zhang, S., Sun, W., Ma, S., & Zhao, Z. K. (2016). Cloning and evaluation of different constitutive promoters in the oleaginous yeast Rhodosporidium toruloides. Yeast, 33, 99–106.
Liu, H., Zhao, X., Wang, F., Li, Y., Jiang, X., Ye, M., Zhao, Z. K., & Zou, H. (2009). Comparative proteomic analysis of Rhodosporidium toruloides during lipid accumulation. Yeast, 26, 553–566.
Certik, M., & Shimizu, S. (1999). Biosynthesis and regulation of microbial polyunsaturated fatty acid production. Journal of Bioscience and Bioengineering, 87, 1–14.
Uemura, H. (2012). Synthesis and production of unsaturated and polyunsaturated fatty acids in yeast: current state and perspectives. Applied Microbiology and Biotechnology, 95, 1–12.
Xue, Z., Sharpe, P. L., Hong, S. P., Yadav, N. S., Xie, D., Short, D. R., et al. (2013). Production of omega-3 eicosapentaenoic acid by metabolic engineering of Yarrowia lipolytica. Nature Biotechnology, 31, 734–740.
Bucek, A., Matouskova, P., Sychrova, H., Pichova, I., & Hruskova-Heidingsfeldova, O. (2014). Delta12-fatty acid desaturase from Candida parapsilosis is a multifunctional desaturase producing a range of polyunsaturated and hydroxylated fatty acids. PloS One, 9, e93322.
Ageitos, J. M., Vallejo, J. A., Veiga-Crespo, P., & Villa, T. G. (2011). Oily yeasts as oleaginous cell factories. Applied Microbiology and Biotechnology, 90, 1219–1227.
Yu, A. Q., Pratomo Juwono, N. K., Leong, S. S., & Chang, M. W. (2014). Production of fatty acid-derived valuable chemicals in synthetic microbes. Frontiers in Bioengineering and Biotechnology, 2, 78.
Hu, C., Zhao, X., Zhao, J., Wu, S., & Zhao, Z. K. (2009). Effects of biomass hydrolysis by-products on oleaginous yeast Rhodosporidium toruloides. Bioresource Technology, 100, 4843–4847.
Huang, Q., Wang, Q., Gong, Z., Jin, G., Shen, H., Xiao, S., Xie, H., Ye, S., Wang, J., & Zhao, Z. K. (2013). Effects of selected ionic liquids on lipid production by the oleaginous yeast Rhodosporidium toruloides. Bioresource Technology, 130, 339–344.
Zhao, X., Wu, S., Hu, C., Wang, Q., Hua, Y., & Zhao, Z. K. (2010). Lipid production from Jerusalem artichoke by Rhodosporidium toruloides Y4. Journal of Industrial Microbiology & Biotechnology, 37, 581–585.
Fillet, S., Gibert, J., Suarez, B., Lara, A., Ronchel, C., & Adrio, J. L. (2015). Fatty alcohols production by oleaginous yeast. Journal of Industrial Microbiology & Biotechnology, 42, 1463–1472.
Zhang, S., Skerker, J. M., Rutter, C. D., Maurer, M. J., Arkin, A. P., & Rao, C. V. (2016). Engineering Rhodosporidium toruloides for increased lipid production. Biotechnology and Bioengineering, 113, 1056–1066.
Rodriguez-Vargas, S., Sanchez-Garcia, A., Martinez-Rivas, J. M., Prieto, J. A., & Randez-Gil, F. (2007). Fluidization of membrane lipids enhances the tolerance of Saccharomyces cerevisiae to freezing and salt stress. Applied and Environmental Microbiology, 73, 110–116.
Acknowledgments
We thank Professors Xiaofeng Dai and Tianhong Wang for providing us Agrobacterium tumefaciens AGL1. This work was supported by the National Natural Science Foundation of China (nos. 31370128, 21325627).
Conflict of Interest
The authors declare that they have no conflict of interest.
Author information
Authors and Affiliations
Corresponding authors
Rights and permissions
About this article
Cite this article
Wang, Y., Zhang, S., Pötter, M. et al. Overexpression of Δ12-Fatty Acid Desaturase in the Oleaginous Yeast Rhodosporidium toruloides for Production of Linoleic Acid-Rich Lipids. Appl Biochem Biotechnol 180, 1497–1507 (2016). https://doi.org/10.1007/s12010-016-2182-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12010-016-2182-9