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Enhanced production of single copy backbone-free transgenic plants in multiple crop species using binary vectors with a pRi replication origin in Agrobacterium tumefaciens

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Abstract

Single transgene copy, vector backbone-free transgenic crop plants are highly desired for functional genomics and many biotechnological applications. We demonstrate that binary vectors that use a replication origin derived from the Ri plasmid of Agrobacterium rhizogenes (oriRi) increase the frequency of single copy, backbone-free transgenic plants in Agrobacterium tumefaciens mediated transformation of soybean, canola, and corn, compared to RK2-derived binary vectors (RK2 oriV). In large scale soybean transformation experiments, the frequency of single copy, backbone-free transgenic plants was nearly doubled in two versions of the oriRi vectors compared to the RK2 oriV control vector. In canola transformation experiments, the oriRi vector produced more single copy, backbone-free transgenic plants than did the RK2 oriV vector. In corn transformation experiments, the frequency of single copy backbone-free transgenic plants was also significantly increased when using the oriRi vector, although the transformation frequency dropped. These results, derived from transformation experiments using three crops, indicate the advantage of oriRi vectors over RK2 oriV binary vectors for the production of single copy, backbone-free transgenic plants using Agrobacterium-mediated transformation.

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References

  • Afolabi AS, Worland B, Snape JW, Vain P (2004) A large-scale study of rice plants transformed with different T-DNAs provides new insights into locus composition and T-DNA linkage configurations. Theor Appl Genet 109:815–826

    Article  PubMed  CAS  Google Scholar 

  • Albright LS, Yanofsky MF, Leroux B, Ma D, Nester EW (1987) Processing of the T-DNA of Agrobacterium tumefaciens generates border nicks and linear, single-stranded T-DNA. J Bacteriol 169:1046–1055

    PubMed  CAS  Google Scholar 

  • An G, Mitra A, Choi HK, Costa MA, An K, Thornburg RW, Ryan CA (1989) Functional analysis of the 3′ control region of the potato wound-inducible proteinase inhibitor II gene. Plant Cell 1:115–122

    Article  PubMed  CAS  Google Scholar 

  • Armstrong CL, Rout JR, inventors (2001) A novel Agrobacterium-mediated plant transformation method. WO Patent 0109302A

  • Bevan M (1984) Binary Agrobacterium vectors for plant transformation. Nucleic Acids Res 12:8711–8721

    Article  PubMed  CAS  Google Scholar 

  • Bubner B, Baldwin IT (2004) Use of real-time PCR for determining copy number and zygosity in transgenic plants. Plant Cell Rep 23:263–271

    Article  PubMed  CAS  Google Scholar 

  • Cevallos MA, Cervantes-Rivera R, Gutiérrez-Rios RM (2008) The repABC plasmid family. Plasmid 60:19–37

    Article  PubMed  CAS  Google Scholar 

  • Cho H, Winans SC (2005) VirA and VirG activate the Ti plasmid repABC operon, elevating plasmid copy number in response to wound-released chemical signals. Proc Natl Acad Sci USA 102:14843–14848

    Article  PubMed  CAS  Google Scholar 

  • De Buck S, Wilde CD, Van Montague M, Depicker A (2000) T-DNA vector backbone sequences are frequently integrated into the genome of transgenic plants obtained by Agrobacterium-mediated transformation. Mol Breed 6:459–468

    Article  Google Scholar 

  • De Framond AJ, Barton KA, Chilton MD (1983) MINI-Ti: a new vector strategy for plant genetic engineering. Biotechnology 1:262–269

    Article  Google Scholar 

  • Deblaere R, Bytebier B, De Greve H, Deboeck F, Schell J, Van Montagu M, Leemans J (1985) Efficient octopine Ti plasmid-derived vectors for Agrobacterium-mediated gene transfer to plants. Nucleic Acids Res 13:4777–4788

    Article  PubMed  CAS  Google Scholar 

  • Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1:19–21

    Article  CAS  Google Scholar 

  • Gupta M, Nirunsuksiri W, Schulenberg G, Hartl T, Novak S, Bryan J, Vanopdorp N, Bing J, Thompson S (2008) A non-PCR-based Invader® assay quantitatively detects single-copy genes in complex plant genomes. Mol Breed 21:173–181

    Article  CAS  Google Scholar 

  • Hajdukiewicz P, Svab Z, Maliga P (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol Biol 25:989–994

    Article  PubMed  CAS  Google Scholar 

  • Hamilton CM (1997) A binary-BAC system for plant transformation with high-molecular-weight DNA. Gene 200:107–116

    Article  PubMed  CAS  Google Scholar 

  • Hanson B, Engler D, Moy Y, Newman B, Ralston E, Gutterson N (1999) A simple method to enrich an Agrobacterium-transformed population for plants containing only T-DNA sequences. Plant J 19:727–734

    Article  PubMed  CAS  Google Scholar 

  • Hellens R, Mullineaux P, Klee H (2000a) Technical focus: a guide to Agrobacterium binary Ti vectors. Trends Plant Sci 5:446–451

    Article  PubMed  CAS  Google Scholar 

  • Hellens RP, Edwards EA, Leyland NR, Bean S, Mullineaux PM (2000b) pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Mol Biol 42:819–832

    Article  PubMed  CAS  Google Scholar 

  • Hoekema A, Roelvink PW, Hooykaas PJ, Schilperoort RA (1984) Delivery of T-DNA from the Agrobacterium tumefaciens chromosome into plant cells. EMBO J 3:2485–2490

    PubMed  CAS  Google Scholar 

  • Huang S, Gilbertson LA, Adams TH, Malloy KP, Reisenbigler EK, Birr DH, Snyder MW, Zhang Q, Luethy MH (2004) Generation of marker-free transgenic maize by regular two-border Agrobacterium transformation vectors. Transgenic Res 13:451–461

    Article  PubMed  CAS  Google Scholar 

  • Jouanin L, Vilaine F, d’Enfert C, Casse-Delbart F (1985) Localization and restriction maps of the replication origin regions of the plasmids of Agrobacterium rhizogenes strain A4. Mol Gen Genet 201:370–374

    Article  CAS  Google Scholar 

  • Komori T, Imayama T, Kato N, Ishida Y, Ueki J, Komari T (2007) Current status of binary vectors and superbinary vectors. Plant Physiol 145:1155–1160

    Article  PubMed  CAS  Google Scholar 

  • Koncz C, Schell J (1986) The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector. Mol Gen Genet 204:383–396

    Article  CAS  Google Scholar 

  • Kononov ME, Bassuner B, Gelvin SB (1997) Integration of T-DNA binary vector ‘backbone’ sequences into the tobacco genome: evidence for multiple complex patterns of integration. Plant J 11:945–957

    Article  PubMed  CAS  Google Scholar 

  • Lee LY, Gelvin SB (2008) T-DNA binary vectors and systems. Plant Physiol 146:325–332

    Article  PubMed  CAS  Google Scholar 

  • Lee LY, Humara JM, Gelvin SB (2001) Novel constructions to enable the integration of genes into the Agrobacterium tumefaciens C58 chromosome. Mol Plant Microbe Interact 14:577–579

    Article  PubMed  CAS  Google Scholar 

  • McBride KE, Summerfelt KR (1990) Improved binary vectors for Agrobacterium-mediated plant transformation. Plant Mol Biol 14:269–276

    Article  PubMed  CAS  Google Scholar 

  • McCormac AC, Elliott MC, Chen DF (1997) pBECKS: a flexible series of binary vectors for Agrobacterium-mediated plant transformation. Mol Biotechnol 8:199–213

    Article  PubMed  CAS  Google Scholar 

  • Nishiguchi R, Takanami M, Oka A (1987) Characterization and sequence determination of the replicator region in the hairy-root-inducing plasmid pRiA4b. Mol Gen Genet 206:1–8

    Article  CAS  Google Scholar 

  • Olhoft PM, Flagel LE, Somers DA (2004) T-DNA locus structure in a large population of soybean plants transformed using the Agrobacterium-mediated cotyledonary-node method. Plant Biotechnol J 2:289–300

    Article  PubMed  CAS  Google Scholar 

  • Oltmanns H, Frame B, Lee Y, Johnson S, Li B, Wang W, Gelvin SB (2010) Generation of “backbone” free, low transgene copy plants by launching T-DNA from the Agrobacterium chromosome. Plant Physiol 152:1158–1166

    Article  PubMed  CAS  Google Scholar 

  • Pielberg G, Day AE, Plastow GS, Andersson L (2003) A sensitive method for detecting variation in copy numbers of duplicated genes. Genome Res 13:2171–2177

    Article  PubMed  CAS  Google Scholar 

  • Podevin N, De Buck S, De Wilde C, Depicker A (2006) Insights into recognition of the T-DNA border repeats as termination sites for T-strand synthesis by Agrobacterium tumefaciens. Transgenic Res 15:557–571

    Article  PubMed  CAS  Google Scholar 

  • Radke SE, Turner JC, Facciotti D (1992) Transformation and regeneration of Brassica rapa using Agrobacterium tumefaciens. Plant Cell Rep 11:499–505

    Article  Google Scholar 

  • Rommens CM, Humara JM, Ye J, Richael C, Zhang L, Perry R, Swords K (2004) Crop improvement through modification of the plant’s own genome. Plant Physiol 135:421–431

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor

    Google Scholar 

  • Simoens C, Alliotte T, Mendel R, Müller A, Schiemann J, Van Lijsebettens M, Schell J, Van Montagu M, Inzé D (1986) A binary vector for transferring genomic libraries to plants. Nucleic Acids Res 14:8073–8090

    Article  PubMed  CAS  Google Scholar 

  • Tinland B (1998) Reassessing T-DNA insertions. Trends Plant Sci 3:125

    Article  Google Scholar 

  • Veluthambi K, Jayaswal RK, Gelvin SB (1987) Virulence genes A, G, and D mediate the double-stranded border cleavage of T-DNA from the Agrobacterium Ti plasmid. Proc Natl Acad Sci USA 84:1881–1885

    Article  PubMed  CAS  Google Scholar 

  • Vergunst AC, van Lier MCM, den Dulk-Ras A, Stüve TAG, Ouwehand A, Hooykaas PJJ (2005) Positive charge is an important feature of the C-terminal transport signal of the VirB/D4-translocated proteins of Agrobacterium. Proc Natl Acad Sci USA 102:832–837

    Article  PubMed  CAS  Google Scholar 

  • Wenck A, Czakó M, Kanevski I, Márton L (1997) Frequent collinear long transfer of DNA inclusive of the whole binary vector during Agrobacterium-mediated transformation. Plant Mol Biol 34:913–922

    Article  PubMed  CAS  Google Scholar 

  • Xiang C, Han P, Lutziger I, Wang K, Oliver DJ (1999) A mini binary vector series for plant transformation. Plant Mol Biol 40:711–717

    Article  PubMed  CAS  Google Scholar 

  • Ye X, Gilbertson LA, Peterson MW, inventors (2007) Vectors and methods for improved plant transformation efficiency. US patent application no. US2007/0074314 A1, March 29, 2007

  • Ye X, Williams EJ, Shen J, Esser JA, Nichols AM, Petersen MW, Gilbertson LA (2008) Plant development inhibitory genes in binary vector backbone improve quality event efficiency in soybean transformation. Transgenic Res 17:827–838

    Article  PubMed  CAS  Google Scholar 

  • Zambryski P, Joos H, Genetello H, Leemans J, Van Montague M, Schell J (1983) Ti plasmid vectors for the introduction of DNA into plant cells without alteration of their normal regeneration capacity. EMBO J 2:2143–2150

    PubMed  CAS  Google Scholar 

  • Zupan J, Muth TR, Draper O, Zambryski P (2000) The transfer of DNA from Agrobacterium tumefaciens into plants: a feast of fundamental insights. Plant J 23:11–28

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank many Monsanto colleagues for assistance during the course of the experiments and data analysis. Particularly, we thank Middleton Soybean Transformation Team for the large scale soybean transformation experiments; J. Rout, M. McKenzie, M. Mann, B. Davis and J. Kumpf at Monsanto Mystic Campus for corn plant transformation; Monsanto Trait Development teams at Middleton, Davis and Mystic for plant care in greenhouses; Monsanto Gene Assessment and Molecular Analysis teams at Middleton, St. Louis and Mystic for transgene copy number and other molecular analyses; Drs. D. Somers and B. Tinland for critical reading manuscript, and J. Harrison and C. Marquez for statistical analysis.

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Correspondence to Xudong Ye.

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Ye, X., Williams, E.J., Shen, J. et al. Enhanced production of single copy backbone-free transgenic plants in multiple crop species using binary vectors with a pRi replication origin in Agrobacterium tumefaciens . Transgenic Res 20, 773–786 (2011). https://doi.org/10.1007/s11248-010-9458-6

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