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Mapping cell fate decisions that occur during soybean defense responses

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Abstract

The soybean defense response to the soybean cyst nematode was used as a model to map at cellular resolution its genotype-defined cell fate decisions occurring during its resistant reactions. The defense responses occur at the site of infection, a nurse cell known as the syncytium. Two major genotype-defined defense responses exist, the G. max [Peking]- and G. max [PI 88788]-types. Resistance in G. max [Peking] is potent and rapid, accompanied by the formation of cell wall appositions (CWAs), structures known to perform important defense roles. In contrast, defense occurs by a potent but more prolonged reaction in G. max [PI 88788], lacking CWAs. Comparative transcriptomic analyses with confirmation by Illumina® deep sequencing were organized through a custom-developed application, Pathway Analysis and Integrated Coloring of Experiments (PAICE) that presents gene expression of these cytologically and developmentally distinct defense responses using the Kyoto Encyclopedia of Genes and Genomes (KEGG) framework. The analyses resulted in the generation of 1,643 PAICE pathways, allowing better understanding of gene activity across all chromosomes. Analyses of the rhg1 resistance locus, defined within a 67 kb region of DNA demonstrate expression of an amino acid transporter and an α soluble NSF attachment protein gene specifically in syncytia undergoing their defense responses.

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Acknowledgments

VPK thankfully acknowledges support provided by the Mississippi Soybean Promotion Board. Dr. Gary Lawrence, Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University provided helpful insight into the developmental biology of H. glycines as they infect soybean and the defense responses of G. max [Peking/PI 548402] and G. max [PI 88788]. VPK thanks Dr. Halina Knap, Department of Agronomy, Plant Molecular Cytogenetics and Genetics, Clemson University for crucial insights during the analyses and writing of the manuscript.

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  1. Department of Biological Sciences, Mississippi State University, Mississippi State, MS, 39762, USA

    Prachi D. Matsye, Christina M. Jones & Vincent P. Klink

  2. Center of Biostatistics and Bioinformatics, University of Mississippi Medical Center, Arthur C. Guyton Research Complex, G-651, 2500 North State Street, Jackson, MS, 39216, USA

    Ranjit Kumar

  3. Department of Computer and Information Sciences, Jess and Mildred Fisher College of Science and Mathematics, Towson University, Towson, MD, 21252, USA

    Parsa Hosseini & Nadim W. Alkharouf

  4. Henry A. Wallace Beltsville Agricultural Research Center, Plant Sciences Institute, Soybean Genomics and Improvement Laboratory, United States Department of Agriculture-Agricultural Research Service, Bldg. 006, Beltsville, MD, 20705, USA

    Arianne Tremblay & Benjamin F. Matthews

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  1. Prachi D. Matsye
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Correspondence to Vincent P. Klink.

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The authors Prachi D. Matsye, Ranjit Kumar contributed equally to the work.

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Matsye, P.D., Kumar, R., Hosseini, P. et al. Mapping cell fate decisions that occur during soybean defense responses. Plant Mol Biol 77, 513 (2011). https://doi.org/10.1007/s11103-011-9828-3

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