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Molecular mapping of leaf rust resistance gene Lr15 in hexaploid wheat

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Abstract

Leaf rust is a widespread and commonly occurring rust disease of wheat. Genetic resistance is the most economical method of reducing losses due to leaf rust. Lr15 has been shown to be present on wheat chromosome 2D and is reported to be a seedling resistance gene. However, tightly linked markers associated with Lr15 have not been reported to date. To identify molecular markers linked to Lr15, an F2 mapping population of Thatcher × Thatcher-Lr15 was generated. Available wheat simple sequence repeat markers were utilized in parental screening and polymorphic markers were used to analyze the entire population of 221 plants. Phenotypic evaluations of the F2-derived F3 progenies with Puccinia triticina Eriks. pathotype 162A (93R15) confirmed the monogenic inheritance of Lr15. The linkage group representing chromosome 2DS was constructed at LOD 4.0 which revealed the closest flanking markers Xgwm4562 and Xgwm102 at a distance of 3.1 and 9.3 cM, respectively. Furthermore, utilization of these flanking markers in combination has successfully identified wheat lines with or without Lr15. These markers could potentially be useful in gene pyramiding with other genes to enhance rust resistance in wheat.

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References

  • Babu R, Nair SK, Prasanna BM, Gupta HS (2004) Integrating marker-assisted selection in crop breeding: prospects and challenges. Curr Sci 87:607–619

    CAS  Google Scholar 

  • Bansal UK, Hayden MJ, Venkata BP, Khanna R, Saini RG, Bariana HS (2008) Genetic mapping of adult plant leaf rust resistance genes Lr48 and Lr49 in common wheat. Theor Appl Genet 117:307–312

    Article  PubMed  CAS  Google Scholar 

  • Bossolini E, Krattinger SG, Keller B (2006) Development of simple sequence repeat markers specific for the Lr34 resistance region of wheat using sequence information from rice and Aegilops tauschii. Theor Appl Genet 113:1049–1062

    Article  PubMed  CAS  Google Scholar 

  • Gupta SK, Charpe A, Prabhu KV, Haque QMR (2006) Identification and validation of molecular markers linked to the leaf rust resistance gene Lr19 in wheat. Theor Appl Genet 113:1027–1036

    Article  PubMed  CAS  Google Scholar 

  • Hiebert CW, Thomas JB, Somers DJ, McCallum BD, Fox SL (2007) Microsatellite mapping of adult-plant leaf rust resistance gene Lr22a in wheat. Theor Appl Genet 115:877–884

    Article  PubMed  CAS  Google Scholar 

  • Huerta-Espino J, Singh RP, German S, McCallum BD, Park RF, Chen WQ, Bhardwaj SC, Goyeau H (2011) Global status of wheat leaf rust caused by Puccinia triticina. Euphytica 179:143–160

    Article  Google Scholar 

  • Khan RR, Bariana HS, Dholakia BB, Naik SV, Lagu MD, Rathjen AJ, Bhavani S, Gupta VS (2005) Molecular mapping of stem and leaf rust resistance in wheat. Theor Appl Genet 111:846–850

    Article  PubMed  CAS  Google Scholar 

  • Kolmer JA (1996) Genetics of resistance to wheat leaf rust. Annu Rev Phytopathol 34:435–455

    Article  PubMed  CAS  Google Scholar 

  • Kolmer JA (2005) Tracking wheat rust on a continental scale. Curr Opin Plant Biol 8:441–449

    Article  PubMed  Google Scholar 

  • Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172–175

    Google Scholar 

  • Lagudah ES, McFadden H, Singh RP, Huerta-Espino J, Bariana HS, Spielmeyer W (2006) Molecular genetic characterization of the Lr34/Yr18 slow rusting resistance gene region in wheat. Theor Appl Genet 114:21–30

    Article  PubMed  CAS  Google Scholar 

  • Lander ES, Green P, Abrahamson J, Barlow A, Day MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181

    Article  PubMed  CAS  Google Scholar 

  • Luig NH, McIntosh RA (1968) Location and linkage of genes on wheat chromosome 2D. Can J Genet Cytol 10:99–105

    Google Scholar 

  • McIntosh RA, Baker EP (1968) A linkage map for chromosome 2D. In: Finlay KW, Shepard KW (eds) Proceedings of the 3rd International Wheat Genetics Symposium, Sydney, Australia, pp 305–308

  • McIntosh RA, Wellings CR, Park RF (1995) Wheat rusts: an atlas of resistance genes. CSIRO, Collingwood

    Book  Google Scholar 

  • McIntosh RA, Yamazaki Y, Dubcovsky J, Rogers J, Morris C, Somers DJ, Appels R, Devos KM (2008) Catalogue of gene symbols for wheat. http://www.shigen.nig.ac.jp/wheat/komugi/genes/download.jsp. Accessed 21 Jan 2011

  • Messmer M, Seyfarth R, Keller M, Schachermayr GM, Winzeler M, Zanetti S, Feuillet C, Keller B (2000) Genetic analysis of durable leaf rust resistance in winter wheat. Theor Appl Genet 100:419–431

    Article  CAS  Google Scholar 

  • Mohler V, Singh D, Singrun C, Park RF (2012) Characterization and mapping of Lr65 in spelt wheat ‘Altgold Rotkorn’. Plant Breed 131:252–257

    Article  CAS  Google Scholar 

  • Nagarajan S, Joshi LM (1975) A historical account of wheat rust epidemics in India and their significance. Cereal Rusts Bull 3:29–33

    Google Scholar 

  • Pestsova E, Ganal MW, Röder MS (2000) Isolation and mapping of microsatellite markers specific for the D genome of bread wheat. Genome 43:689–697

    Article  PubMed  CAS  Google Scholar 

  • Raupp WJ, Singh S, Brown-Guedira GL, Gill BS (2001) Cytogenetic and molecular mapping of the leaf rust resistance gene Lr39 in wheat. Theor Appl Genet 102:347–352

    Article  CAS  Google Scholar 

  • Röder MS, Korzun V, Wendehale K, Plaschke J, Tixier M-H, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149:2007–2023

    PubMed  Google Scholar 

  • Sanguinetti CJ, Dias Neto E, Simpson AJ (1994) Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. Biotechniques 17:914–921

    PubMed  CAS  Google Scholar 

  • Sharp PJ, Johnston S, Brown G, McIntosh RA, Pallota M, Carter M, Bariana HS, Khatkar S, Lagudah ES, Singh RP, Khairallah M, Potter R, Jones MGK (2001) Validation of molecular markers for wheat breeding. Aust J Agric Res 52:1357–1366

    Article  CAS  Google Scholar 

  • Singh S, Bowden RL (2011) Molecular mapping of adult-plant race-specific leaf rust resistance gene Lr12 in bread wheat. Mol Breed 28:137–142

    Article  Google Scholar 

  • Singh S, Franks CD, Huang L, Brown-Guedira GL, Marshall DS, Gill BS, Fritz A (2004) Lr41, Lr39 and a leaf rust resistance gene from Aegilops cylindrical may be allelic and are located on wheat chromosome 2DS. Theor Appl Genet 108:586–591

    Article  PubMed  CAS  Google Scholar 

  • Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109:1105–1114

    Article  PubMed  CAS  Google Scholar 

  • Sourdille P, Singh S, Cadalen T, Brown-Guedira GL, Gay G, Qi L, Gill BS, Dufour P, Murigneux A, Bernard M (2004) Microsatellite based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Funct Integr Genomics 4:12–25

    Article  PubMed  CAS  Google Scholar 

  • Stein N, Herren G, Keller B (2001) A new DNA extraction method for high-throughput marker analysis in a large-genome species such as Triticum aestivum. Plant Breed 120:354–356

    Article  CAS  Google Scholar 

  • Sun X, Bai G, Carver BF (2009) Molecular markers for wheat leaf rust resistance gene Lr41. Mol Breed 23:311–321

    Article  CAS  Google Scholar 

  • Tsilo TJ, Chao S, Jin Y, Anderson JA (2009) Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat. Theor Appl Genet 118:515–524

    Article  PubMed  CAS  Google Scholar 

  • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78

    Article  PubMed  CAS  Google Scholar 

  • Zhang H, Xia X, He Z, Li X, Li Z, Liu D (2011) Molecular mapping of leaf rust resistance gene LrBi16 in Chinese wheat cultivar Bimai 16. Mol Breed 28:527–534

    Article  CAS  Google Scholar 

Download references

Acknowledgments

Some of the SSR primers were kindly provided by the company Trait Genetics GmbH, IPK, Germany under material transfer agreement. The authors thank A. Kancharla and K.P. Kulkarni for their technical assistance and Dr. H. S. Bariana (Plant Breeding Institute, University of Sydney, Australia) for important suggestions during the study. The Director, Agharkar Research Institute, Pune is profusely thanked for field facilities. We also thank anonymous reviewers for helpful comments. Financial assistance from the Department of Biotechnology, New Delhi, India and Swiss Development Co-operation, Switzerland under Indo-Swiss Collaboration in Biotechnology is gratefully acknowledged.

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Correspondence to V. S. Gupta.

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Dholakia, B.B., Rajwade, A.V., Hosmani, P. et al. Molecular mapping of leaf rust resistance gene Lr15 in hexaploid wheat. Mol Breeding 31, 743–747 (2013). https://doi.org/10.1007/s11032-012-9813-9

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  • DOI: https://doi.org/10.1007/s11032-012-9813-9

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