Skip to main content
Log in

Isolation and Characterization of Twenty Microsatellite Loci in Japanese Sea Cucumber (Stichopus japonicus)

  • Published:
Marine Biotechnology Aims and scope Submit manuscript

Abstract

Twenty microsatellite markers were first developed from the Japanese sea cucumber Stichopus japonicus using an enrichment protocol. Of the 20 microsatellite loci, 19 loci were polymorphic in the population examined. At these polymorphic loci, the number of alleles per locus varied from 2 to 15, and the observed heterozygosities ranged from 0.03 to 0.97, which is considerably higher than those previously found for allozymes. The high variability of the microsatellite markers identified in this study will make them excellent tools for genetic analyses of S. japonicus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • B. Angers L. Bernatchez (1997) ArticleTitleComplex evolution of a salmonid microsatellite locus and its consequences in inferring allelic divergence from size information Mol Biol Evol 14 IssueID3 230–238 Occurrence Handle9066791

    PubMed  Google Scholar 

  • N. Bierne S. Launey Y. Naciri-Graven F. Bonhomme (1998) ArticleTitleEarly effect of inbreeding as revealed by microsatellite analyses on Ostrea edulis larvae Genetics 148 IssueID4 1893–1906 Occurrence Handle9560403

    PubMed  Google Scholar 

  • D.F. Callen A.D. Thompson Y. Shen H.A. Phillips R.I. Richards J.C. Mulley G.R. Sutherland (1993) ArticleTitleIncidence and origin of “null” alleles in the (AC)n microsatellite markers Am J Hum Genet 52 922–927 Occurrence Handle8488841

    PubMed  Google Scholar 

  • K.L. Carleton J.T. Streelman B.-Y. Lee N. Garnhart M. Kidd T.D. Kocher (2002) ArticleTitleRapid isolation of CA microsatellites from the tilapia genome Anim Genet 33 140–144 Occurrence Handle10.1046/j.1365-2052.2002.00817.x Occurrence Handle12047227

    Article  PubMed  Google Scholar 

  • S. Choe Y. Oshima (1961) ArticleTitleOn the morphological and ecological differences between two commercial forms, “green” and “red”, of the Japanese common sea cucumber, Stichopus japonicus SELENKA Nippon Suisan Gakkaishi 27 97–105

    Google Scholar 

  • A. Gullberg H. Tegelstrom M. Olsson (1997) ArticleTitleMicrosatellite in the sand lizard (Lacerta agilis): description, variation, inheritance, and applicability Biochem Genet 35 281–295 Occurrence Handle10.1023/A:1021801217185 Occurrence Handle9435947

    Article  PubMed  Google Scholar 

  • A.G. Jones C.A. Stockwell D. Walker J.C. Avise (1998) ArticleTitleThe molecular basis of the microsatellite null allele from the white sand pupfish J Hered 89 339–342 Occurrence Handle10.1093/jhered/89.4.339

    Article  Google Scholar 

  • M. Kanno A. Kijima (2002a) ArticleTitleQuantitative and qualitative evaluation on the color variation of the Japanese sea cucumber Stichopus japonicus Suisanzoshoku 50 63–69

    Google Scholar 

  • M. Kanno A. Kijima (2002b) ArticleTitleHigh genetic variability of isozymes in Japanese sea cucumber Stichopus japonicus Fish Genet Breed Sci 31 7–12

    Google Scholar 

  • M. Kanno A. Kijima (2003) ArticleTitleGenetic differentiation among three color variants of Japanese sea cucumber Stichopus japonicus Fish Sci 69 IssueID4 806–812 Occurrence Handle10.1046/j.1444-2906.2003.00690.x

    Article  Google Scholar 

  • S. Launey D. Hedgecock (2001) ArticleTitleHigh genetic load in the Pacific oyster Crassostrea gigas Genetics 159 255–265 Occurrence Handle11560902

    PubMed  Google Scholar 

  • Q. Li C. Park A. Kijima (2002) ArticleTitleIsolation and characterization of microsatellite loci in the Pacific abalone, Haliotis discus hannai J Shellfish Res 21 IssueID2 811–815

    Google Scholar 

  • Q. Li C. Park T. Kobayashi A. Kijima (2003a) ArticleTitleInheritance of microsatellite DNA markers in the Pacific abalone Haliotis discus hannai Mar Biotechnol 5 331–338 Occurrence Handle10.1007/s10126-002-0116-8

    Article  Google Scholar 

  • Q. Li C. Park A. Kijima (2003b) ArticleTitleAllelic transmission of microsatellites and application to kinship analysis in newly hatched Pacific abalone larvae Fish Sci 69 881–887 Occurrence Handle10.1046/j.1444-2906.2003.00703.x

    Article  Google Scholar 

  • D.J. McGoldrick D. Hedgecock L.J. English P. Baoprasertkul R.D. Ward (2000) ArticleTitleThe transmission of microsatellite alleles in Australian and North American stocks of the Pacific oyster (Crassostrea gigas) selection and null alleles J Shellfish Res 19 779–788

    Google Scholar 

  • J. Nelson G. Cooper T Garner P. Schnupf (2002) ArticleTitlePolymorphic markers for the sea cucumber Parastichopus californicus Mol Ecol Notes 2 233–235 Occurrence Handle10.1046/j.1471-8286.2002.00205.x

    Article  Google Scholar 

  • S. Nishimura (1995) Guide to Seashore Animals of Japan with Color Pictures and Keys, Vol. 2 Hoikusya Osaka, Japan

    Google Scholar 

  • M. Raymond F. Rousset (1995) ArticleTitlePopulation genetics software for exact tests and ecumenicism J Hered 86 248–249

    Google Scholar 

  • Y.K. Tam I. Kornfield (1996) ArticleTitleCharacterization of microsatellite markers in Homarus (Crustacea, Decapoda) Mol Mar Biol Biotechnol 5 230–238 Occurrence Handle8817929

    PubMed  Google Scholar 

  • L. Zane L. Bargelloni T. Patarnello (2002) ArticleTitleStrategies for microsatellite isolation: a review Mol Ecol 11 1–16 Occurrence Handle10.1046/j.0962-1083.2001.01418.x Occurrence Handle11903900

    Article  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Akihiro Kijima.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kanno, M., Li, Q. & Kijima, A. Isolation and Characterization of Twenty Microsatellite Loci in Japanese Sea Cucumber (Stichopus japonicus). Mar Biotechnol 7, 179–183 (2005). https://doi.org/10.1007/s10126-004-0006-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10126-004-0006-3

Keywords

Navigation