Skip to main content
Log in

Recent developments in the thermophilic microbiology of deep-sea hydrothermal vents

  • Review
  • Published:
Extremophiles Aims and scope Submit manuscript

Abstract

The diversity of thermophilic prokaryotes inhabiting deep-sea hot vents was actively studied over the last two decades. The ever growing interest is reflected in the exponentially increasing number of novel thermophilic genera described. The goal of this paper is to survey the progress in this field made in the years 2000–2005. In this period, representatives of several new taxa of hyperthermophilic archaea were obtained from deep-sea environments. Two of these isolates had phenotypic features new for this group of organisms: the presence of an outer cell membrane (the genus Ignicoccus) and the ability to grow anaerobically with acetate and ferric iron (the genus Geoglobus). Also, our knowledge on the diversity of thermophilic bacteria from deep-sea thermal environments extended significantly. The new bacterial isolates represented diverse bacterial divisions: the phylum Aquificae, the subclass Epsilonproteobacteria, the order Thermotogales, the families Thermodesulfobacteriaceae, Deferribacteraceae, and Thermaceae, and a novel bacterial phylum represented by the genus Caldithrix. Most of these isolates are obligate or facultative lithotrophs, oxidizing molecular hydrogen in the course of different types of anaerobic respiration or microaerobic growth. The existence and significant ecological role of some of new bacterial thermophilic isolates was initially established by molecular methods.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Alain K, Olagnon M, Desbruyères D, Pagé A, Barbier G, Juniper SK, Quérellou J, Cambon-Bonavita M-A (2002a) Phylogenetic characterization of the bacterial assemblage associated with mucous secretions of the hydrothermal vent polychaete Paralvinella palmiformis. FEMS Microbiol Ecol 42:463–476

    Article  Google Scholar 

  • Alain K, Quérelou J, Lesongeur F, Pignet P, Crassous P, Raguénès G, Cueff V, Cambon-Bonavita M-A (2002b) Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vents. Int J Syst Evol Microbiol 52:1317–1323

    Article  Google Scholar 

  • Alain K, Marteinsson VT, Miroshnichenko ML, Bonch-Osmolovskaya EA, Prieur D, Birrien J-L (2002c) Marinitoga piezophila sp. nov., a rod-shaped thermo-piezophilic bacterium isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 52:1331–1339

    Article  Google Scholar 

  • Alain K, Pignet P, Zbinden M, Quillevere M, Duchiron F, Donval JP, Lesongeur F, Raguénès G, Crassous R, Quérelou J, Cambon-Bonavita M-A (2002d) Caminicella sporogenes gen. nov., sp. nov., a novel thermophilic spore-forming bacterium isolated from an East-Pacific Rise hydrothermal vent. Int J Syst Evol Microbiol 52:1621–1628

    Article  Google Scholar 

  • Alain K, Rolland S, Crassous P, Lesongeur F, Zbinden M, Le Gall C, Godfroy A, Pagé A, Juniper SK, Cambon-Bonavita M-A, Duchiron F, Quérellou J (2003) Desulfurobacterium crinifex sp. nov., a novel thermophilic pinkish-streamer forming chemolithotrophic bacterium isolated from a Juan de Fuca Ridge hydrothermal vent and amendment of the genus Desulfurobacterium. Extremophiles 7:361–370

    Article  PubMed  Google Scholar 

  • Alain K, Zbinden M, Le Bris N, Lesonqeur F, Quérellou J, Gaill F, Cambon-Bonavita M-A (2004) Early steps in microbial colonization processes at deep-sea hydrothermal vents. Environ Microbiol 6:227–241

    Article  PubMed  Google Scholar 

  • Antoine E, Cilia V, Meunier JR, Guenzennec J, Lesongeuer F, Barbier G (1997) Thermosipho melanesiensis sp. nov., a new thermophilic anaerobic bacterium belonging to the order Thermotogales, isolated from deep-sea hydrothermal vents in the Southwestern Pacific Ocean. Int J Syst Bacteriol 47(4):1118–1123

    PubMed  Google Scholar 

  • Blöchl E, Burggraf S, Fiala G, Lauerer G, Huber G, Huber R, Rachel R, Segerer A, Stetter KO, Völkl P (1995) Isolation, taxonomy and phylogeny of hyperthermophilic microorganisms. World J Microbiol Biotechnol 11:9–16

    Article  Google Scholar 

  • Blöchl E, Rachel R, Burggraf S, Hafenbradl D, Jannasch HW, Stetter KO (1997) Pyrolobus fumarii gen. nov., sp. nov., represents a novel group of archaea, extending the upper temperature limit for life to 113°C. Extremophiles 1:14–21

    Article  PubMed  Google Scholar 

  • Burggraf S, Jannasch HW, Nicolaus B, Stetter KO (1990) Archaeoglobus profundus, sp. nov., represents a new species within the sulfate-reducing archaeobacteria. Syst Appl Microbiol 13:24–28

    Google Scholar 

  • Campbell BJ, Jeanthon C, Joel E, Kostka E, Luther GW, Cary SC (2001) Growth and phylogenetic properties of novel bacteria belonging to the Epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents. Appl Environ Microbiol 67:4566–4572

    Article  PubMed  Google Scholar 

  • Corre E, Reysenbach A-L, Prieur D (2001) Epsilon-proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiol Lett 205:329–335

    Article  PubMed  Google Scholar 

  • Fardeau M-L, Bonilla-Salinas M, L’Haridon S, Jeanthon C, Verhé F, Cayol J-L, Patel B, Garcia J-L, Ollivier B (2004) Isolation from oil reservoirs of novel thermophilic anaerobes phylogenetically related to Thermoanaerobacter subterraneus: reassignment of T. subterraneus, Thermoanaerobacter yonseiensis, Thermoanaerobacter tengcongensis and Carboxydibrachium pacificum to Caldanaerobacter subterraneus gen. nov., sp. nov., comb. Nov. as four novel subspecies. Int J Syst Evol Microbiol 54:467–474

    Article  PubMed  Google Scholar 

  • Fiala G, Stetter KO, Jannasch HW, Langworthy TA, Madon J (1986) Staphylothermus marinus sp. nov. represents a novel genus of extremely thermophilic submarine heterotrophic archaeobacteria growing up to 98°C. Syst Appl Microbiol 8:106–113

    Google Scholar 

  • Götz D, Banta A, Beveridge TG, Rushdi AI, Simoneit BRT, Reysenbach A-L (2002) Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel thermophilic hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents. Int J Syst Evol Microbiol 52:1349–1359

    Article  PubMed  Google Scholar 

  • Greene AC, Patel BKC, Sheehy A (1997) Deferribacter thermophilus gen. nov., sp. nov., a novel thermophilic manganese- and iron-reducing bacterium isolated from a petroleum reservoir. Int J Syst Bacteriol 47:505–509

    PubMed  Google Scholar 

  • Habbad A, Camacho P, Durand P, Cary SC (1995) Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl Environ Microbiol 61:1679–1687

    PubMed  Google Scholar 

  • Hatchikian EC, Ollivier B, Garcia J-L (2001) Thermodesulfobacteriaceae. In: Boone DR, Garrity GM (eds) Bergey’s manual of systematic bacteriology, vol 1, 2nd edn. Springer, Berlin Heidelberg New York, pp 390–393

  • Henry EA, Devereux R, Maki JS, Gilmour CC, Woese CR, Mandelco L, Scauder R, Remsen CC, Mitchel R (1994) Characterization of a new thermophilic sulfate-reducing bacterium Thermodesulfovibrio yellowstonii, gen. nov. and sp. nov.: its phylogenetic relationship to Thermodesulfobacterium commune and their origins deep within the bacterial domain. Arch Microbiol 161:62–69

    PubMed  Google Scholar 

  • Hoek J, Banta A, Hubler F, Reysenbach A-L (2003) Microbial diversity of a sulfide spire located in the Edmond deep-sea hydrothermal vent field on the Central Indian Ridge. Geobiology 1:119–127

    Article  Google Scholar 

  • Hohn MJ, Hedlund BP, Huber H (2002) Detection of 16S rDNA sequences representing the novel phylum “Nanoarchaeota”: indication for a wide distribution in high temperature biotopes. Syst Appl Microbiol 25:551–554

    Article  PubMed  Google Scholar 

  • Huber H, Burggraf S, Mayer T, Wyschkony I, Rachel R, Stetter KO (2000) Ignicoccus gen. nov., a novel genus of hyperthermophilic, chemolithoautotrophic Archaea, represented by two new species, Ignicoccus islandicus sp. nov. and Ignicoccus pacificus sp. nov. Int J Syst Evol Microbiol 50:2093–2100

    PubMed  Google Scholar 

  • Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO (2002) A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417:63–67

    Article  PubMed  Google Scholar 

  • Huber JA, Butterfield DA, Baross JA (2002) Temporal changes in archaeal diversity and chemistry in a midocean ridge subseafloor habitat. Appl Environ Microbiol 68:1585–1594

    Article  PubMed  Google Scholar 

  • Huber JA, Butterfield DA, Baross JA (2003) Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. FEMS Microbiol Ecol 43:393–409

    Article  Google Scholar 

  • Huber R, Woese CR, Langworthy TA, Fricke H, Stetter KO (1989) Thermosipho africanus gen. nov., represents a new genus of thermophilic eubacteria within the “Thermotogales”. Syst Appl Microbiol 12:32–37

    Google Scholar 

  • Huber R, Wilharm T, Huber D, Trincone A, Burggraf S, König H, Rachel R, Rockinger I, Fricke H, Stetter KO (1992) Aquifex pyrophilus gen. nov. sp. nov., represents a novel group of marine hyperthermophilic hydrogen-oxidizing bacteria. Syst Appl Microbiol 15:340–351

    Google Scholar 

  • Huber R, Jannasch H, Rachel R, Fuchs T, Stetter KO (1997) Archaeoglobus veneficus sp. nov., a novel facultative chemolithoautotrophic hyperthermophilic sulfite reducer, isolated from abyssal black smokers. Syst Appl Microbiol 20:374–380

    Google Scholar 

  • Huber R, Diller S, Horn C, Rachel R (2002) Thermovibrio ruber gen. nov., sp. nov., an extremely thermophilic, chemolithoautotrophic, nitrate-reducing bacterium that forms a deep branch within the phylum Aquificae. Int J Syst Evol Microbiol 52:1859–1865

    Article  PubMed  Google Scholar 

  • Jeanthon C (2000) Molecular ecology of hydrothermal vent microbial communities. Antonie van Leeuwenhoek (J Microbiol Serol) 77:117–133

    Article  Google Scholar 

  • Jeanthon C, L’Haridon S, Reysenbach A-L, Corre E, Vernet M, Messner P, Sleytr UB (1999) Methanococcus vulcanius sp nov, a novel hyperthermophilic methanogen isolated from East Pacific Rise, and identification of Methanococcus sp. DSM 4213(T) as Methanococcus fervens sp. nov. Int J Syst Bacteriol 49:583–589

    PubMed  Google Scholar 

  • Jeanthon C, L’Haridon S, Cueff V, Banta A, Reysenbach A-L, Prieur D (2002) Thermodesulfobacterium hydrogeniphilum sp. nov., a thermophilic, chemolithotrophic, sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent at Guaymas Basin, and emendation of the genus Thermodesulfobacterium. Int J Syst Evol Microbiol 52:765–772

    Article  PubMed  Google Scholar 

  • Jolivet E, L’Haridon S, Corre E, Forterre P, Prieur D (2003) Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from deep-sea hydrothermal vents that resists ionizing radiation. Int J Syst Evol Microbiol 53:847–851

    Article  PubMed  Google Scholar 

  • Jolivet E, Corre E, L’Haridon S, Forterre P, Prieur D (2004) Thermococcus marinus sp. nov. and Thermococcus radiotolerans sp. nov., two hyperthermophilic archaea from deep-sea hydrothermal vents that resist ionizing radiation. Extremophiles 8:219–227

    Article  PubMed  Google Scholar 

  • Jones WJ, Leigh JA, Mayer F, Woese CR, Wolfe RS (1983) Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent. Arch Microbiol 136:254–261

    Article  Google Scholar 

  • Kashefi K, Lovley DR (2003) Extending the upper temperature limit for life. Science 301:934

    Article  PubMed  Google Scholar 

  • Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach AL, Lovley DR (2002) Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor. Int J Syst Evol Microbiol 52:719–728

    Article  PubMed  Google Scholar 

  • Kashefi K, Holmes DE, Barros JA, Lovley DR (2003) Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel member of the Geobacteraceae from the “Bag City” hydrothermal vent. Appl Environ Microbiol 69:2985–2993

    Article  PubMed  Google Scholar 

  • Kawasumi T, Igarashi Y, Kodama T, Minoda Y (1984) Hydrogenobacter thermophilus gen. nov., sp. nov., an extremely thermophilic, aerobic, hydrogen-oxidizing bacterium. Int J Syst Bacteriol 34:5–10

    Google Scholar 

  • Kryukov VR, Saveleva ND, Pusheva MA (1983) Calderobacterium hydrogenophilum, nov. gen., nov. sp., an extremely thermophilic hydrogen bacterium and its hydrogenase activity (in Russian). Mikrobiologiya 52:781–788

    Google Scholar 

  • Kurr M, Huber R, König H, Jannasch HW, Fricke H, Trincone A, Kristjansson JK, Stetter KO (1991) Methanopyrus kandleri, gen. and sp. nov. represents a novel group of hyperthermophilic methanogens, growing at 110°C. Arch Microbiol 156:239–247

    Article  Google Scholar 

  • L’Haridon S, Cilia V, Messner P, Raguenes G, Gambacorta A, Sleytr UB, Prieur D, Jeanthon C (1998) Desulfurobacterium thermolithotrophum gen. nov., sp. nov., a novel autotrophic, sulfur-reducing bacterium isolated from a deep-sea hydrothermal vent. Int J Syst Bacteriol 48:701–711

    PubMed  Google Scholar 

  • L’Haridon S, Reysenbach A-L, Banta A, Messner P, Schumann P, Stackebrandt E, Jeanthon C (2003) Methanocaldococcus indicus sp. nov., a novel hyperthermophilic methanogen isolated from the Central Indian Ridge. Int J Syst Evol Microbiol 53:1931–1935

    Article  PubMed  Google Scholar 

  • Longenecker K, Reysenbach A-L (2001) Expansion of the geographic distribution of a novel lineage of epsilon-Proteobacteria to a hydrothermal vent site on the Southern East Pacific Rise. FEMS Microbiol Ecol 35:287–293

    Article  PubMed  Google Scholar 

  • Lopez-Garcia P, Gaill F, Moreira D (2002) Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ Microbiol 4:204–215

    Article  PubMed  Google Scholar 

  • Lopez-Garcia P, Duperron S, Philippot P, Foriel J, Susini J, Moreira D (2003) Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge. Environ Microbiol 5:961–976

    Article  PubMed  Google Scholar 

  • Lovley DR, Holmes DE, Nevin KP (2004) Dissimilatory Fe(III) and Mn(IV) reduction. Adv Microb Physiol 49:219–286

    Article  PubMed  Google Scholar 

  • Marteinsson VT (1999) Isolation and characterization of Thermus thermophilus Gy1211 from a deep-sea hydrothermal vent. Extremophiles 3:247–251

    Article  PubMed  Google Scholar 

  • Marteinsson VT, Birrien JL, Prieur D (1997) In situ enrichment and isolation of thermophilic microorganisms from deep-sea hydrothermal environments. Can J Microbiol 43:694–697

    Google Scholar 

  • Marteinsson VT, Birrien JL, Reysenbach AL, Vernet M, Marie D, Gambacorta A, Messner P, Sleytr U, Prieur D (1999) Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under hydrostatic pressure. Int J Syst Bacteriol 49:351–359

    PubMed  Google Scholar 

  • Miroshnichenko ML, Kostrikina NA, L’Haridon S, Jeanthon S, Hippe S, Stackebrandt E, Bonch-Osmolovskaya EA (2002) Nautilia lithotrophica gen. nov., sp. nov., a thermophilic sulfur-reducing epsilon-proteobacterium isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 52:1299–1304

    Article  PubMed  Google Scholar 

  • Miroshnichenko ML, Slobodkin AI, Kostrikina NA, L’Haridon S, Nercessian O, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA, Jeanthon C (2003a) Deferribacter abyssi sp. nov.—a new anaerobic thermophilic bacterium from the deep-sea hydrothermal vents of the Mid-Atlantic Ridge. Int J Syst Evol Microbiol 53:1637–1641

    Article  Google Scholar 

  • Miroshnichenko ML, L’Haridon S, Jeanthon C, Antipov AN, Kostrikina NA, Chernyh NA, Tindall B, Schumann P, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA (2003b) Oceanithermus profundus gen. nov., sp. nov., a thermophilic, microaerophilic facultatively chemolithoheterotrophic bacterium from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 53:747–752

    Article  Google Scholar 

  • Miroshnichenko ML, L’Haridon S, Nersessian O, Antipov AN, Kostrikina NA, Tindall B, Schumann P, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA, Jeanthon C (2003c) Vulcanithermus mediatlanticus gen. nov., sp. nov., a novel member of the family Thermaceae from a deep-sea hot vent. Int J Syst Evol Microbiol 53:1143–1148

    Article  Google Scholar 

  • Miroshnichenko ML, Kostrikina NA, Chernyh NA, Pimenov NV, Tourova TP, Antipov AN, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA (2003d) Caldithrix abyssi gen. nov., sp. nov., a nitrate-reducing, thermophilic, anaerobic bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent, represents a novel bacterial lineage. Int J Syst Evol Microbiol 53:747–752

    Article  Google Scholar 

  • Miroshnichenko ML, L’Haridon S, Schumann P, Spring S, Bonch-Osmolovskaya EA, Jeanthon C, Stackebrandt E (2004) Caminibacter profundus sp. nov., isolated from a deep-sea hydrothermal vent represents a novel thermophilic bacterium of the Nautiliales ord. nov. within the class “Epsilonproteobacteria”. Int J Syst Evol Microbiol 54:41–45

    Article  PubMed  Google Scholar 

  • Mori K, Kakegawa T, Yowsuke H, Nakamura K, Maruyama A, Hanada S (2004) Oceanithermus desulfurans sp. nov., a novel thermophilic, sulfur-reducing bacterium isolated from a sulfide chimney in Suiyo Seamount. Int J Syst Evol Microbiol 54:1561–1566

    Article  PubMed  Google Scholar 

  • Moussard H, L’Haridon S, Tindall BJ, Banta A, Schumann P, Stackebrandt E, Reysenbach A-L, Jeanthon C (2004) Thermodesulfatator indicus gen. nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge. Int J Syst Evol Microbiol 54:227–233

    Article  PubMed  Google Scholar 

  • Moyer C, Dobbs F, Karl D (1995) Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount. Hawaii. Appl Environ Microbiol 61:1555–1562

    PubMed  Google Scholar 

  • Nakagawa S, Takai K, Horikoshi K, Sako Y (2003) Persephonella hydrogeniphila sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 53:863–869

    Article  PubMed  Google Scholar 

  • Nakagawa S, Takai K, Horikoshi K, Sako Y (2004) Aeropyrum camini sp. nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 54:329–335

    Article  PubMed  Google Scholar 

  • Nakagawa S, Takai K, Inagaki F, Horikoshi K, Sako Y (2005) Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the epsilon-Proteobacteria 4 isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 55:925–933

    Article  PubMed  Google Scholar 

  • Nercessian O, Reysenbach A-L, Prieur D, Jeanthon C (2003) Archaeal diversity associated with in situ samplers deployed on hydrothermal vents on the East Pacific Rise (13°N). Environ Microbiol 5:492–502

    Article  PubMed  Google Scholar 

  • Pley U, Schipka J, Gambacorta A, Jannasch H, Fricke H, Rachel R, Stetter KO (1991) Pyrodictium abyssi, sp. nov. represents a novel heterotrophic marine hyperthermophilic archaeon growing at 110°C. Syst Appl Microbiol 14:245–253

    Google Scholar 

  • Postec A, Le Breton C, Fardeau M-L, Lesongeur F, Pignet P, Querellou J, Ollivier B, Godfroy A (2005) Marinitoga hydrogenitolerans sp. nov., a novel member of the order Thermotogales isolated from a black smocker chimney on the Mid-Atlantic Ridge. Int J Syst Evol Microbiol 55:1217–1221

    Article  PubMed  Google Scholar 

  • Prieur D, Jeanthon C, Erauso G (1995) Hyperthermophilic life at deep-sea hydrothermal vents. Planet Space Sci 43:115–122

    Article  PubMed  Google Scholar 

  • Prokofeva MI, Kublanov IV, Nercessian O, Tourova TP, Kolganova TV, Bonch-Osmolovskaya EA, Spring S, Jeanthon C (2005) Cultivated anaerobic acidophilic/acidotolerant thermophiles from terrestrial and deep-sea habitats. Extremophiles (in press)

  • Reysenbach A-L (2001a) Thermotogales. In: Ed: DR Boone, GM Garrity Bergey’s Manual of systematic bacteriology, vol 1, 2nd edn. Springer, Berlin Heidelberg New York, pp 369–387

  • Reysenbach A-L (2001b) Aquificales. In: Boone DR, Garrity GM (eds) Bergey’s manual of systematic bacteriology, vol 1, 2nd edn. Springer, Berlin Heidelberg New York, pp369–387

  • Reysenbach A-L, Banta A, Boone DR, Cary SC, Luther GW (2000a) Microbial essentials at hydrothermal vents. Nature 404:835–836

    Article  Google Scholar 

  • Reysenbach A-L, Longnecker K, Kirshtein J (2000b) Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl Environ Microbiol 66:3788–3797

    Article  Google Scholar 

  • Reysenbach A-L, Götz D, Banta A, Jeanthon C, Fouquet Y (2002) Expanding the distribution of the Aquificales to the deep-sea vents on Mid-Atlantic Ridge and Central Indian Ridge. Cah Biol Mar 43:425–428

    Google Scholar 

  • Sako Y, Nakagawa S, Takai K, Horikoshi K (2003) Marinithermus hydrothermalis gen. nov., sp. nov., a strictly aerobic thermophilic bacterium from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 53:59–65

    Article  PubMed  Google Scholar 

  • Schönheit P, Schäfer T (1995) Metabolism of hyperthermophiles. World J Microbiol Biotechnol 11:26–57

    Article  Google Scholar 

  • Sievert SM, Kuever JM, Muyzer G (2000) Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl Environ Microbiol 66:3102–3109

    Article  PubMed  Google Scholar 

  • Skirnisdottir S, Hreggvidsson GO, Holst O, Kristjansson JK (2001) Isolation and characterization of a mixotrophic sulfur-oxidizing Thermus scotoductus. Extremophiles 5:45–51

    Article  PubMed  Google Scholar 

  • Slobodkin AI, Jeanthon C, L’Haridon S, Nazina TN, Miroshnichenko ML, Bonch-Osmolovskaya EA (1999) Dissimilatory reduction of Fe(III) by thermophilic Bacteria and Archaea in deep subsurface petroleum reservoirs of western Siberia. Curr Microbiol 39:99–102

    Article  PubMed  Google Scholar 

  • Slobodkin AI, Campbell B, Cary CS, Bonch-Osmolovskaya EA, Jeanthon C (2001) Evidence for the presence of thermophilic Fe(III)-reducing microorganisms in deep-sea hydrothermal vents at 13°N (East Pacific Rise). FEMS Microbiol Ecol 36:235–243

    Article  PubMed  Google Scholar 

  • Slobodkin AI, Tourova TP, Kostrikina NA, Chernyh NA, Bonch-Osmolovskaya EA, Jeanthon C, Jones BE (2003) Tepidibacter thalassicus gen. nov., sp. nov., a novel moderately thermophilic, anaerobic fermentative bacterium from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 53:1131–1134

    Article  PubMed  Google Scholar 

  • Sokolova TG, Gonzales JM, Kostrikina NA, Chernyh NA, Tourova TP, Kato C, Bonch-Osmolovskaya EA, Robb FT (2001) Carboxydobrachium pacificum gen. nov., sp. nov., a new anaerobic, thermophilic, CO-utilizing marine bacterium from Okinawa Trough. Int J Syst Evol Microbiol 51:141–149

    PubMed  Google Scholar 

  • Sokolova TG, Kostrikina NA, Chernyh NA, Tourova TP, Bonch-Osmolovskaya EA (2002) Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic CO-utilizing thermophile from a Kamchatkan hot spring. Int J Syst Evol Microbiol 52:1961–1967

    Article  PubMed  Google Scholar 

  • Sokolova TG, Jeanthon C, Kostrikina NA, Chernyh NA, Lebedinsky AV, Stackebrandt E, Bonch-Osmolovskaya EA (2004a) The first evidence of anaerobic CO oxidation coupled with H2 production by a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Extremophiles 8:317–323

    Article  Google Scholar 

  • Sokolova TG, González JM, Kostrikina NA, Chernyh NA, Slepova TV, Bonch-Osmolovskaya EA, Robb FT (2004b) Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic thermophilic carbon monoxide oxidizing hydrogenogenic bacterium from a hot pool of Yellowstone National Park. Int J Syst Evol Microbiol 54:2353–2359

    Article  Google Scholar 

  • Stetter KO (1996) Hyperthermophilic prokaryotes. FEMS Microbiol Rev 18:149–158

    Article  Google Scholar 

  • Subbotina IV, Chernyh NA, Lebedinsky AV, Kublanov IV, Bonch-Osmolovskaya EA (2003) Oligonucleotide probes for detection of the representatives of genus Thermoanaerobacter. Microbiology (English Translation of Mikrobiologia) 72:331–339

    Google Scholar 

  • Svetlichny VA, Sokolova TG, Gerhardt M, Ringpfeil M, Kostrikina NA, Zavarzin GA (1991) Carboxydothermus hydrogenoformans gen. nov., sp. nov., a CO-utilizing thermophilic anaerobic bacterium from hydrothermal environments of Kunashir Island. Syst Appl Microbiol 14:254–260

    Google Scholar 

  • Svetlitchny VA, Peschel C, Acker G, Meyer O (2001) Two membrane-associated NiFeS–carbon monoxide dehydrogenases from the anaerobic carbon-monoxide-utilizing eubacterium Carboxydothermus hydrogenoformans. J Bacteriol 183:5134–5144

    Article  PubMed  Google Scholar 

  • Symonds RB, Rose WI, Bluth GJS, Gerlach TM (1994) Volcanic gas studies: methods, results and applications. In: Carroland MR, Holloway JR (eds) Volatiles in magma. Mineralogical Society of America, Washington DC, pp 1–66

    Google Scholar 

  • Takai K, Horikoshi K (2000) Thermosipho japonicus sp. nov., an extremely thermophilic bacterium isolated from a deep-sea hydrothermal vents in Japan. Extremophiles 4:9–17

    PubMed  Google Scholar 

  • Takai K, Sugai A, Itoh T, Horikoshi K (2000) Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 50:489–500

    PubMed  Google Scholar 

  • Takai K, Inone A, Horikoshi K (2002) Methanothermococcus okinawensis sp. nov, thermophilic methane-producing archaeon isolated from a western Pacific deep-sea hydrothermal vent. Int J Syst Evol Microbiol 52:1089–1095

    Article  PubMed  Google Scholar 

  • Takai K, Nakagawa S, Sako Y, Horikoshi K (2003a) Balnearium lithotrophicum gen. nov., sp. nov., a novel thermophilic, strictly anaerobic, hydrogen-oxidizing chemolithoautotroph isolated from a black smoker chimney in the Suiyo Seamount hydrothermal system. Int J Syst Evol Microbiol 53:1947–1954

    Article  Google Scholar 

  • Takai K, Kobayashi H, Nealson KH, Horikoshi K (2003b) Deferribacter desulfuricans sp. nov., a novel sulfur- nitrate- or arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 53:839–846

    Article  Google Scholar 

  • Takai K, Inagaki F, Nakagawa S, Hirayama H, Nunoura T, Sako Y, Nealson KH, Horikoshi K (2003c) Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields. FEMS Microbiol Lett 218:167–174

    Article  Google Scholar 

  • Takai K, Nealson KH, Horikoshi K (2004a) Hydrogenimonas thermophila gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing chemolithoautotroph within the epsilon-Proteobacteria, isolated from a black smoker in a Central Indian Ridge hydrothermal field. Int J Syst Evol Microbiol 54:25–32

    Article  Google Scholar 

  • Takai K, Nealson KH, Horikoshi K (2004b) Methanotorris formicicus sp. nov., a novel extremely thermophilic, methane-producing archaeon isolated from a black smoker chimney in the Central Indian Ridge. Int J Syst Evol Microbiol 54:1095–1100

    Article  Google Scholar 

  • Takai K, Gamo T, Tsunogai U, Nakayama N, Hirayama H, Nealson KH, Horikoshi K (2004c) Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field. Extremophiles 8:269–283

    Article  Google Scholar 

  • Takai K, Hirayama H, Nakagawa T, Suzuki Y, Nealson K, Horikoshi K (2005) Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogenoxidizing chemolithoautotroph within epsilon-Proteobacteria isolated from a deep-sea hydrothermal fumarole in the Mariana Arc. Int J Syst Evol Microbiol 55:183–189

    Article  PubMed  Google Scholar 

  • Teske A, Hinrichs K-U, Edgcomb V, de Vera Gomez A, Kysela D, Sylva SP, Sogin MP, Jannasch HW (2002) Microbial diversity of hydrothermal sediments in the Guaymas basin. Evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68:1994–2007

    Article  PubMed  Google Scholar 

  • Urios L, Cueff V, Pignet P, Barbier G (2004a) Tepidibacter formicigenes sp. nov., a novel spore-forming bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent. Int J Syst Evol Microbiol 54:439–443

    Article  Google Scholar 

  • Urios L, Cueff-Gauchard V, Pignet P, Postec A, Fardeau M-L, Ollivier B, Barbier G (2004b) Thermosipho atlanticus sp. nov., a novel member of the Thermotogales isolated from a Mid-Atlantic Ridge. Int J Syst Evol Microbiol 54:1953–1957

    Article  Google Scholar 

  • Vandamme P, De Ley J (1991) Proposal for a new family, Campylobacteraceae. Int J Syst Bacteriol 41:451–455

    Google Scholar 

  • Vetriani C, Speck MD, Ellor SV, Kutz RA, Starovoitov V (2004) Thermovibrio ammonificans sp. nov., a thermophilic, chemolithotrophic, nitrate-ammonifying bacterium from deep-sea hydrothermal vents. Int J Syst Evol Microbiol 54:175–181

    Article  PubMed  Google Scholar 

  • Voordeckers JW. Starovoytov V, Vetriani C (2005) Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. Int J Syst Evol Microbiol 55:773–779

    Article  PubMed  Google Scholar 

  • Wery N, Lesongeur F, Pignet P, Derennes V, Cambon-Bonavita MA, Godfroy A, Barbier G (2001a) Marinitoga camini gen. nov., sp. nov., a rod-shaped bacterium belonging to the order Thermotogales, isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 51:495–504

    Google Scholar 

  • Wery N, Moricet JM, Cueff V, Jean J, Pignet P, Lesongeur F, Cambon-Bonavita M-A, Barbier G (2001b) Caloranaerobacter azorensis gen. nov., sp. nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 51:1789–1796

    Google Scholar 

  • Williams RAD, Da Costa MS (1992) The genus Thermus and related microorganisms. In: Ballows A, Trüper HG, Dworkin M, Harber W, Schleifer KH (eds) The prokaryotes, 2nd edn. Springer, Berlin Heidelberg New York, pp 3645–3753

    Google Scholar 

  • Zhao H, Wood AG, Widdel F, Bryant M (1988) An extremely thermophilic Methanococcus from the deep-sea hydrothermal vent and its plasmid. Arch Microbiol 150:178–183

    Article  Google Scholar 

  • Zillig W, Reysenbach A-L (2001) Thermococcales. In: Boone DR, Garrity GM (eds) Bergey’s manual of systematic bacteriology, vol 1, 2nd edn. Springer, Berlin Heidelberg New York, pp 341–347

Download references

Acknowledgements

This work was supported by “Molecular and Cell Biology” and “Biodiversity” programs of Russian Academy of Sciences.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Margarita L. Miroshnichenko.

Additional information

Communicated by D. Cowan

Rights and permissions

Reprints and permissions

About this article

Cite this article

Miroshnichenko, M.L., Bonch-Osmolovskaya, E.A. Recent developments in the thermophilic microbiology of deep-sea hydrothermal vents. Extremophiles 10, 85–96 (2006). https://doi.org/10.1007/s00792-005-0489-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00792-005-0489-5

Keywords

Navigation