Abstract
Italian vascular flora is highly representative of the Euro-Mediterranean area, because the region includes high mountain territories, temperate areas, and regions dominated by the Mediterranean climate. Chromosome number information about the Italian flora stored in the online database Chrobase.it includes 6,756 records, referable to 3,539 cytotypes and 2,785 accepted species and subspecies (approx. 35% of the national flora). Appropriate queries to Chrobase.it enabled us to map chromosome numbers, at order rank, in a robust phylogenetic framework, derived from APGIII and other recent phylogenetic studies on vascular plants. Similar work was conducted for selected families and genera. Chromosome number data were available for 41 out of 80 vascular plant orders (51%) currently recognized world-wide and 107 out of 428 families (25%), represented by 661 genera (4.5%). The large number of records enabled us to compute the mean chromosome number for each taxon, and to highlight significant differences among all orders and among subsets of families and genera. For each taxon, we analysed the variability in chromosome number by use of common statistical methods, and computed the frequency of chromosome numbers, the coefficient of variation of chromosome number (CVCN), the frequency of B-chromosomes (fB), and that of odd chromosome numbers (fOCN). The phylogenetic relevance of our results is discussed and the usefulness of basic karyological data, often neglected in current phylogenetic studies, is stressed.
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References
APGII (2003) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants. Bot J Linn Soc 141:399–436
APGIII (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 161:105–121
Bareka P, Mitsainas GP, Constantinidis P, Kamari G (2008) Phytokaryon: a karyological database of European and Mediterranean plants. Fl Medit 18:109–116
Bedini G, Garbari F (2003) Chromosome numbers for Italian flora on-line. OPTIMA Newslett 37:23–27
Bedini G, Garbari F (2004) Chrobase.it, una base di dati in rete per i numeri cromosomici della flora italiana. Inform Bot Ital 36(1):49–52
Bedini G, Garbari F, Peruzzi L. (eds) (2010 onwards) Chrobase.it. Chromosome numbers for the Italian flora. available online at www.biologia.unipi.it/chrobase
Bedini G, Garbari F, Peruzzi L (2011) Karyological knowledge of Italian vascular flora as inferred by the analysis of “Chrobase.it”. Pl Biosystems. doi:10.1080/11263504.2011.611182 (in press)
Caputo P, Frediani M, Venora G, Ravalli C, Ambrosio M, Cremonini R (2006) Nuclear DNA contents, rDNAs, and karyotype evolution in subgenus Vicia: III. The heterogeneous section Hypechusa. Protoplasma 228:167–177
Chaw S-M, Parkinson CL, Cheng Y, Vincent TM, Palmer JD (2000) Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. PNAS 97(8):4086–4091
Conti F, Abbate G, Alessandrini A, Blasi C (eds) (2005) An annotated checklist of the Italian vascular flora. Palombi Editori, Roma
Conti F, Alessandrini A, Bacchetta G et al (2007) Integrazioni alla checklist della flora vascolare italiana. Natura Vicentina 10(2006):5–74
Cox AV, Abdelnour GJ, Bennett MD, Leitch IJ (1998) Genome size and karyotype evolution in the slipper orchids (Cypripedioideae: Orchidaceae). Am J Bot 85:681–687
Dawson MI (2000) Index of chromosome numbers of indigenous New Zealand spermatophytes. New Zealand J Bot 38(1):47–150
Dawson MI, Brownsey PJ, Lovis JD (2000) Index of chromosome numbers of indigenous New Zealand pteridophytes. New Zealand J Bot 38(1):25–46
Frediani M, Caputo P, Venora G, Ravalli C, Ambrosio M, Cremonini R (2005) Nuclear DNA contents, rDNAs and karyotype evolution in subgenus Vicia: II Section Peregrinae. Protoplasma 226:181–190
Guerra M (2008) Chromosome numbers in plant cytotaxonomy: concepts and implications. Cytogenet Genome Res 120:339–350
Hipp AL (2007) Nonuniform processes of chromosome evolution in sedges (Carex: Cyperaceae). Evolution 61(9):2175–2194
Hipp AL, Rothrock PE, Reznicek AA, Berry PE (2007) Chromosome number changes associated with speciation in sedges: a phylogenetic study in Carex section Ovales (Cyperaceae) using AFLP data. Aliso 23:193–203
Kowal RR, Mori SA, Kallunki JA (1977) Chromosome numbers of Panamanian Lecythidaceae and their use in subfamilial classification. Brittonia 29:339–410
Leitch IJ, Beaulieu JM, Cheung K, Hanson L, Lysak M, Fay MF (2007) Punctuated genome size evolution in Liliaceae. J Evol Biol 20:2296–2308
Lim KY, Matyasek R, Lichtenstein CP, Leitch AR (2000) Molecular cytogenetic analyses and phylogenetic studies in the Nicotiana section Tomentosae. Chromosoma 109:245–258
Lim KY, Matyasek R, Kovarik A, Leitch AR (2004) Genome evolution in allotetraploid Nicotiana. Biol J Linn Soc 82:599–606
Lim KY, Kovarik A, Matyasek R, Chase MW, Knapp S, McCarthy E, Clarkson JJ, Leitch AR (2006) Comparative genomics and repetitive sequence divergence in the species of diploid Nicotiana section Alatae. Plant J 48:907–919
Lim KY, Kovarik A, Matyasek R, Chase MW, Clarkson J, Grandbastien MA, Leitch AR (2007) Sequence of events leading to near-complete genome turnover in allopolyploid Nicotiana within five million years. New Phytol 175:756–763
Lysak MA, Lexer C (2006) Towards the era of comparative evolutionary genomics in Brassicaceae. Pl Syst Evol 259:175–198
Lysak MA, Mandakova T (2007) Unexpected paleopolyploid evolution in Stenopetalum—a genus with the lowest chromosome numbers in the Brassicaceae. Chromosom Res 15:11–12
Lysak MA, Koch MA, Pecinka A, Schubert I (2005) Chromosome triplication found across the tribe Brassiceae. Genome Res 15:516–525
Lysak MA, Berr A, Pecinka A, Schmidt R, McBreen K, Schubert I (2006) Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. PNAS USA 103:5224–5229
Lysak MA, Cheung K, Kitschke M, Bures P (2007) Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size. Pl Physiol 145:402–410
Marhold K, Mártonfi P, Mereďa P, Mráz P (eds) (2007) Chromosome number survey of the ferns and flowering plants of Slovakia. VEDA, Bratislava
Mayrose I, Barker MS, Otto SP (2010) Probabilistic models of chromosome number evolution and the inference of polyploidy. Syst Biol 59(2):132–144
Peruzzi L (2010) Checklist dei generi e delle famiglie della flora vascolare italiana. Inform Bot Ital 42(1):151–170
Peruzzi L, Leitch IJ, Caparelli KF (2009) Chromosome diversity and evolution in Liliaceae. Ann Bot (London) 103:459–475
Pires JC, Maureira IJ, Givnish TJ, Sytsma KJ, Seberg O, Petersen G, Davis JI, Stevenson DW, Rudall PJ, Fay MF, Chase MW (2006) Phylogeny, genome size, and chromosome evolution of Asparagales. Aliso 22:287–304
Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD (2001) Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature 409:618–622
Roalson EH (2008) A synopsis of chromosome number variation in the Cyperaceae. Bot Rev 74:209–393
Roalson EH, McCubbin AG, Whitkus R (2006) Chromosome evolution in Cyperales. Aliso 23:62–71
Ruffini Castiglione M, Frediani M, Gelati MT, Ravalli C, Venora G, Caputo P, Cremonini R (2007) Cytological and molecular characterization of Vicia esdraeolensis Warb and Eigr: a rare taxon. Protoplasma 231:151–156
Smith AR, Pryer KM, Schuettpelz E, Korall P, Schneider H, Wolf PG (2006) A classification for extant ferns. Taxon 55(3):705–731
Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng CF, Sankoff D, dePamphilis CW, Wall PK, Soltis PS (2009) Polyploidy and angiosperm diversification. Am J Bot 96(1):336–348
Stace CA (2000) Cytology and cytogenetics as a fundamental taxonomic resource for the 20th and 21st centuries. Taxon 49(3):451–477
Stevens PF (2008 onwards) Angiosperm phylogeny website. Version 9, June 2008 [and more or less continuously updated since].” http://www.mobot.org/MOBOT/research/APweb/
Stuessy TF (2009) Plant Taxonomy. The systematic evaluation of comparative data, Columbia University Press
The plant list (2010) Version 1. Published on the Internet; http://www.theplantlist.org/ (accessed 1st January). Royal botanic gardens kew (2010) The plant list. http://www.theplantlist.org/
Venora G, Blangiforti S, Frediani M, Maggini F, Gelati MT, Castiglione MR, Cremonini R (2000) Nuclear DNA contents, rDNAs, chromatin organization, and karyotype evolution in Vicia sect Faba. Protoplasma 213:118–125
Watanabe K, Yahara T, Denda T, Kosuge K (1999) Chromosomal evolution in the genus Brachyscome (Asteraceae, Astereae): statistical tests regarding correlation between changes in karyotype and habit using phylogenetic information. J Pl Res 112:145–161
Weston PH, Carolin RC, Armstrong JA (1984) A cladistic analysis of Boronia Sm and Boronella Baill. (Rutaceae). Austr J Bot 32:187–203
Acknowledgments
This paper was presented for the first time as a lecture during the symposium “Chromosomal studies in plants and animals: still a significant approach in the elucidation of phylogenetic and taxonomical problems?”, in the context of the international congress “Biosystematics”, held in Berlin from 21 to 27 February 2011. Financial funding (EX60%) from University of Pisa is gratefully acknowledged.
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Bedini, G., Garbari, F. & Peruzzi, L. Does chromosome number count? Mapping karyological knowledge on Italian flora in a phylogenetic framework. Plant Syst Evol 298, 739–750 (2012). https://doi.org/10.1007/s00606-011-0585-1
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DOI: https://doi.org/10.1007/s00606-011-0585-1