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Molecular phylogeny of Phalaenopsis Blume (Orchidaceae) based on the internal transcribed spacer of the nuclear ribosomal DNA

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Abstract

The internal transcribed spacer (ITS1, 5.8S rDNA, and ITS2) region of nuclear ribosomal DNA (nrDNA) was sequenced from 53 species, which represent most of the living species diversity in the genus Phalaenopsis (Orchidaceae). A phylogeny was developed for the genus based on the neighbor-joining and maximum parsimony analyses of molecular data. Results of these analyses provided support for the monophyly of the genus Phalaenopsis and concurred in that the genera Doritis and Kingidium should be treated as being parts of the genus Phalaenopsis as suggested by Christenson (2001). Within the genus Phalaenopsis, neither subgenera Aphyllae nor Parishianae were monophyletic, and they were highly clustered with subgenus Proboscidioides plus sections Esmeralda and Deliciosae of subgenus Phalaenopsis based on ITS data. Those species also have the same characters of morphology of four pollinia and similar biogeographies. Furthermore, neither subgenus Phalaenopsis nor Polychilos was monophyletic. Within the subgenus Phalaenopsis, only section Phalaenopsis was highly supported as being monophyletic. As for the subgenus Polychilos, only section Polychilos was moderately supported as being monophyletic. In conclusion, the present molecular data obtained from the ITS sequence of nrDNA of the genus Phalaenopsis provide valuable information for elucidating the phylogeny of this genus.

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References

  • M Aoyama K Kojima M Kobayashi (1994) ArticleTitleMorphology of microspores in Phalaenopsis hybrids Kinki Chugoku Agr. Res 88 49–53

    Google Scholar 

  • B. G Baldwin (1992) ArticleTitlePhylogenetic utility of the internal transcribed sequences of nuclear ribosomal DNA in plants: an example from the Compositae Molec. Phylogenet. Evol 1 3–16 Occurrence Handle1342921 Occurrence Handle1:CAS:528:DyaK3sXms1eksLo%3D

    PubMed  CAS  Google Scholar 

  • B. G Baldwin (1993) ArticleTitleMolecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution reexamined Amer. J. Bot 80 222–238 Occurrence Handle1:CAS:528:DyaK3sXksVGgt7o%3D

    CAS  Google Scholar 

  • B. G Baldwin M. J Sanderson J. M Porter M. F Wojciechowski C.S. Campbell M. J Donoghue (1995) ArticleTitleThe ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny Ann. Missouri Bot. Gard 82 247–277

    Google Scholar 

  • R. J Bayer D. E Soltis P. S Soltis (1996) ArticleTitlePhylogenetic inferences in Antennaria (Asteraceae: Gnaphalieae: Cassiniinae) based on sequences from nuclear ribosomal DNA internal transcribed spacers (ITS) Amer. J. Bot 83 516–527 Occurrence Handle1:CAS:528:DyaK28XjtVWltLY%3D

    CAS  Google Scholar 

  • W. H Chen Y. M Fu R. M Hsieh W. T Tsai M. S Chyou C. C Wu Y. S Lin (1995) Application of DNA amplification fingerprinting in the breeding of Phalaenopsis orchid M Terzi R Cella A Falavigna (Eds) Current issues in plant molecular and cellular biology Kluwer Academic Publishers Dordrecht, Boston, and London 341–346

    Google Scholar 

  • E. A Christenson (2001) Phalaenopsis Timber Press Portland, OR

    Google Scholar 

  • A. V Cox A. M Pridgeon V. A Albert M. W Chase (1997) ArticleTitlePhylogenetics of the slipper orchids (Cypripedioideae, Orchidaceae): nuclear rDNA ITS sequences Pl. Syst. Evol 208 197–223 Occurrence Handle10.1007/BF00985442

    Article  Google Scholar 

  • J Doyle J Doyle (1987) ArticleTitleA rapid DNA isolation procedure for small quantities of fresh leaf tissue Phytochem. Bull 19 11–15

    Google Scholar 

  • J Felsenstein (1985) ArticleTitleConfidence limits on phylogenies: an approach using the bootstrap Evolution 39 783–791

    Google Scholar 

  • W. M Fitch (1971) ArticleTitleTowards defining the course of evolution: minimum change for a specific tree topology Syst. Zool 20 406–416

    Google Scholar 

  • T. A Hall (1999) ArticleTitleBioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucl. Acids Symp. Ser 41 95–98 Occurrence Handle1:CAS:528:DC%2BD3cXhtVyjs7Y%3D

    CAS  Google Scholar 

  • D. M Hillis J. J Bull (1993) ArticleTitleAn empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis Syst. Biol 42 182–192

    Google Scholar 

  • Kao Y. H. (2001) Phylogeny of Phalaenopsis species based on 5S rDNA intergenic sequences. Institute of Botany National Taiwan University, Taipei, Taiwan, Master’s thesis. (in Chinese).

  • M Kimura (1980) ArticleTitleA simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences Molec. Evol 16 111–120 Occurrence Handle1:CAS:528:DyaL3MXmtFSktg%3D%3D

    CAS  Google Scholar 

  • Kiss T, Kis M, Solymosy F (1989a) Nucleotide sequence of a 25S rRNA gene from tomato. Nucl. Acids Res 17:796.

    Google Scholar 

  • Kiss T, Szkukalek A, Solymosy F (1989b) Nucleotide sequence of a 17S (18S) rRNA gene from tomato. Nucl. Acids Res. 17:2127.

    Google Scholar 

  • Kumar S., Tamura K., Jakobsen I. B., Nei M. (2001) MEGA 2.1: Molecular Evolutionary Genetics Analysis software. Arizona State University, Tempe, AZ.

  • A Rzhetsky M Nei (1992) ArticleTitleStatistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference J. Molec. Evol 35 367–375 Occurrence Handle1404422 Occurrence Handle1:CAS:528:DyaK38Xmt12mt7c%3D

    PubMed  CAS  Google Scholar 

  • N Saitou M Nei (1987) ArticleTitleThe Neighbor-joining method: a new method for reconstructing phylogenetic trees Molec. Biol. Evol 4 406–425 Occurrence Handle3447015 Occurrence Handle1:STN:280:BieC1cbgtVY%3D

    PubMed  CAS  Google Scholar 

  • G Seidenfaden (1988a) ArticleTitle Doritis Opera Bot 95 31–34

    Google Scholar 

  • G Seidenfaden (1988b) ArticleTitle Kingidium Opera Bot 95 182–189

    Google Scholar 

  • P. S Shim (1982) ArticleTitleA new generic classification in the Phalaenopsis complex (Orchidaceae) Malayan Nat. J 36 1–28

    Google Scholar 

  • K Shindo H Kamemoto (1963) ArticleTitleKaryotype analysis of some species of Phalaenopsis Cytologia 28 390–398

    Google Scholar 

  • Y Suh L. B Thien H. E Reeve E. A Zimmer (1993) ArticleTitleMolecular evolution and phylogenetic implications of internal sequences of nuclear ribosomal DNA in Winteraceae Amer. J. Bot 80 1042–1055 Occurrence Handle1:CAS:528:DyaK2cXivFCgsbk%3D

    CAS  Google Scholar 

  • Y Sun D. Z Skinner G. H Liang S. H Hulbert (1994) ArticleTitlePhylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA Theor. Appl. Genet 89 26–32 Occurrence Handle10.1007/BF00226978 Occurrence Handle1:CAS:528:DyaK2MXivFWkt7k%3D

    Article  CAS  Google Scholar 

  • H. R Sweet (1968) ArticleTitleRevision of the genus Phalaenopsis, pt. 2 Amer. Orchid Soc. Bull 37 1089–1104

    Google Scholar 

  • Sweet H. R. (1969) Revision of the genus Phalaenopsis, pts. 3 and 4. Amer. Orchid Soc. Bull. 38: 33–43, 225–239.

    Google Scholar 

  • H. R Sweet (1980) The genus Phalaenopsis. The Orchid Digest Pomona CA

    Google Scholar 

  • F Takaiwa K Oono M Sugiura (1984) ArticleTitleThe complete nucleotide sequence of a rice 17S rRNA gene Nucl. Acids Res 12 5441–5448 Occurrence Handle6087286 Occurrence Handle1:CAS:528:DyaL2cXls1ClsLk%3D

    PubMed  CAS  Google Scholar 

  • F Takaiwa K Oono M Sugiura (1985) ArticleTitleThe complete nucleotide sequence of a rice 25S rRNA gene Gene 37 255–289 Occurrence Handle3902573 Occurrence Handle1:CAS:528:DyaL28XhsF2itA%3D%3D

    PubMed  CAS  Google Scholar 

  • R Tanaka K Kamemoto (1984) Chromosomes in orchids: counting and numbers J Arditti (Eds) Orchid biology: reviews and perspectives Vol. III Comstock Publishing, Cornell University Press Ithaca, N.Y

    Google Scholar 

  • C. C Tsai S. C Huang (2001) ArticleTitleThe internal transcribed spacer of ribosomal DNA as a marker for identifying species and hybrids of the Oncidinae J. Hort. Sci. Biotech 76 674–680 Occurrence Handle1:CAS:528:DC%2BD38XivVOrtA%3D%3D

    CAS  Google Scholar 

  • C. G. G. J Steenis ParticleVan (1950) ArticleTitleThe delimitation of Malaysia and its main plant geographical divisions Flora Malesiana. Noordhoff-Kolff (Jakarta) 1 IssueID1 70–75

    Google Scholar 

  • J. W Woodard (1951) ArticleTitleSome chromosome numbers in Phalaenopsis Amer. Orchid Soc. Bull 20 356–358

    Google Scholar 

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Tsai, C.C., Huang, S.C. & Chou, C.H. Molecular phylogeny of Phalaenopsis Blume (Orchidaceae) based on the internal transcribed spacer of the nuclear ribosomal DNA. Plant Syst. Evol. 256, 1–16 (2005). https://doi.org/10.1007/s00606-005-0356-y

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