Abstract
1,3-1,4-β-d-glucanase is an important endoglycosidase in the brewing and animal feed industries. To achieve high-level expression of recombinant glucanase in Pichia pastoris, we designed sequences encoding the α-factor signal peptide from Saccharomyces cerevisiae and the truncated 1,3-1,4-β-d-glucanase from Fibrobacter succinogenes as a whole. The codons encoding the 52 amino acids of the signal peptide and 106 residues of the glucanase protein were optimized for expression in P. pastoris; 189 nucleotides were changed. The G + C content was adjusted to 48–49%, and AT-rich stretches were eliminated to avoid premature termination. The messenger ribonucleic acid secondary structure near the AUG start codon was also adjusted to ensure efficient translation; the resulting glucanase production was twofold higher compared with that achieved with gene structure optimization alone. We also propose a new fermentation strategy for the induction phase, in which 5/95% glycerol/methanol mixed feed was used in days 1–3 and 100% methanol was used on days 4–6. By comparison with methanol feed and glycerol/methanol-mixed feed alone, the yield of recombinant glucanase increased by 38.5 and 16.5%, respectively. The expressed optimized recombinant 1,3-1,4-β-d-glucanase constituted ~90% of the total secreted protein, reaching up to 3 g l−1 in the medium.
Similar content being viewed by others
References
Asryants RA, Duszenkova IV, Nagradova NK (1985) Determination of sepharose-bound protein with coomassie brilliant blue G-250. Anal Biochem 151:571–574
Bielecki S, Galas E (1991) Microbial β-glucanase different from cellulases. Crit Rev Biotechnol 10:275–305
Buliga G, Brant D, Fincher G (1986) The sequence statistics and solution conformation of a barley (1,3-1,4)-β-d-glucan. Carbohydr Res 157:139–156
Burland TG (2000) DNASTAR’s Lasergene sequence analysis software. Methods Mol Biol 132:71–91
Chen JL, Tsai LC, Wen TN, Tang JB, Yuan HS, Shyur LF (2001) Directed mutagenesis of specific active site residues on Fibrobacter succinogenes 1,3-1,4-glucanase significantly affects catalysis and enzyme structural stability. J Biol Chem 276:17895–17901
Clare JJ, Romanos MA, Rayment FB, Rowedder JE, Smith MA, Payne MM, Sreekrishna K, Henwood CA (1991) Production of mouse epidennal growth factor in yeast: high-level secretion using Pichia pastoris strains containing multiple gene copies. Gene 105:205–212
Clark DR, Johnson J, Chung KH, Kirkwood S (1978) Purification, characterization, and action-pattern studies on the endo-1,3-β-d-glucanase from Rhizopus arrhizus. Carbohydr Res 61:457–477
Ekinci MS, McCrae SI, Flint HJ (1997) Isolation and overexpression of a gene encoding an extracellular β-(1,3-1,4)-glucanase from Streptococcus bovis JB1. Appl Environ Microbiol 63:3752–3756
Heinemann U, Ay J, Gaiser O, Muller J, Ponnuswamy M (1996) Enzymology and folding of natural and engineered bacterial β-glucanases studied by X-ray crystallography. J Biol Chem 377:447–454
Hinchliff E, Wendy GB (1984) Expression of the cloned endo-β-1,3-1,4-glucanase gene of Bacillus subtilis in Saccharomyces cerevisiae. Curr Genet 8:471–475
Huang H, Luo H, Bai Y, Wang Y, Yao B (2006) Overexpression of Citrobacter braakii phytase with high specific activity in Pichia pastoris. Acta Microbiol Sin 46:945–950
Invitrogen (2002) Pichia Expression kit: a manual of methods for expression of recombinant proteins in Pichia pastoris. Version M. Invitrogen, San Diego, CA
Li S, Sauer WC, Huang S, Gabert VI (1996) Effect of β-glucanase supplementation to hulless barley- or wheat-soybean meal diets on the digestibilities of energy, protein, β-glucans and amino acid in young pigs. J Anim Sci 74:1649–1656
Liu J, Yu B, Zhao X, Cheng K (2007) Coexpression of rumen microbial b-glucanase and xylanase genes in Lactobacillus reuteri. Appl Microbiol Biotechnol 77:117–124
Luo H, Yao B, Yuan T, Wang Y, Shi X, Wu N, Fan Y (2004) Overexpression of Escherichia coli phytase with high specific activity. Chin J Biotechnol 20:78–84
Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci USA 101:7287–7292
Mathlouthi N, Serge M, Luc S, Bernard Q, Michel L (2002) Effects of xylanase and β-glucanase addition on performance, nutrient digestibility, and physico-chemical conditions in the small intestine contents and faecal microflora of broiler chickens fed a wheat and barley-based diet. Anim Res 51:395–406
Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31:426–428
Olsen O, Borris R, Simon O, Thomsen KK (1991) Hybrid Bacillus 1,3-1,4-β-glucanase: engineering thermostable enzymes by construction of hybrid genes. Mol Gen Genet 225:177–185
Planas A, Juncosa M, Cayetano A, Querol E (1992) Studies on Bacillus licheniformis endo-β-(1,3-1,4)-D-glucanases: characterization and kinetic analysis. Appl Microbiol Biotechnol 37:583–589
Planas A (2000) Bacterial 1,3–1,4-β-glucanases: structure, function and protein engineering. Biochem Biophys Acta 1543:361–382
Plantz BA, Sinha J, Villarete L, Nickerson KW, Schlegel VL (2006) Pichia pastoris fermentation optimization: energy state and testing a growth-associated model. Appl Microbiol Biotechnol 72:297–305
Romanos MA, Scorer CA, Clare JJ (1992) Foreign gene expression in yeast: a review. Yeast 8:423–488
Schimming S, Schwarz WH (1991) Properties of a thermoactive β-1,3-1,4-glucanase (Lichenase) from Clostridium thermocellum expressed in Escherichia coli. Biochem Biophys Res Commun 177:447–452
Shi Y, Zhang Y, Shih D (2005) Cloning and expression analysis of two β-1,3-glucanase genes from strawberry. J Plant Physiol 163:956–967
Sreekrishna K, Brankamp RG, Kropp KE, Blankenship DT, Tsay JT, Smith PL, Wierschke JD, Subramaniam A, Birkenberger LA (1997) Strategies for optimal synthesis and secretion of heterologous proteins in the methylotrophic yeast Pichia pastoris. Gene 190:55–62
Sreekrishna K, Prevatt WD, Thill GP, Davis GR, Koutz P, Barr KA, Hopkins SA (1993) Production of Bacillus entomotoxins in methylotrophic yeast. EPO Patent no. EP0586 892 Al
Sue MP, Mariana LF, Brian M, Linda MH (2005) Heterologous protein production using the Pichia pastoris expression system. Yeast 22:249–270
Teather RM, Erfle JD (1990) DNA sequence of a Fibrobacter succinogenes mixed-linkage 3-glucanase (1,3-1,4-β-d-glucan 4-glucanohydrolase) gene. J Bacteriol 172:3837–3841
Teng D, Fan Y, Yang Y, Tian Z, Luo J, Wang J (2007) Codon optimization of Bacillus licheniformis β-1,3–1,4-glucanase gene and its expression in Pichia pastoris. Appl Microbiol Biotechnol 74:1074–1083
Tsai LC, Shyur LF, Cheng YS, Lee SH (2005) Crystal structure of truncated Fibrobacter succinogenes 1,3-1,4-β-d-glucanase in complex with β-1,3-1,4-cellotriose. J Mol Biol 354:642–651
Viladot JL, de Ramon E, Durany O, Planas A (1998) Probing the mechanism of Bacillus 1,3–1,4-β-D-glucan 4-glucanohydrolases by chemical rescue of inactive mutants at catalytically essential residues. Biochemistry 37:11332–11342
Wen TN, Chen JL, Lee SH, Yang NS, Shyur LF (2005) A truncated Fibrobacter succinogenes 1,3–1,4-β-d-glucanase with improved enzymatic activity and thermotolerance. Biochemistry 44:9197–9205
Xiong A, Yao Q, Peng R, Zhang Z, Xu F, Liu J, Han P, Chen J (2006) High level expression of a synthetic gene encoding Peniophora lycii phytase in methylotrophic yeast Pichia pastoris. Appl Microbiol Biotechnol 72:1039–1047
Yaish M, Doxey A, McConkey B, Moffatt B, Griffith M (2006) Cold-active winter rye glucanases with ice-binding capacity. Plant Physiol 141:1459–1472
Yang P, Shi P, Wang Y, Bai Y, Meng K, Luo H, Yuan T, Yao B (2007) Cloning and overexpression of a Paenibacillus β-glucanase in Pichia pastoris: purification and characterization of the recombinant enzyme. J Microbiol Biotechnol 17:58–66
Yuan T, Yao B, Luo H, Wang Y, Bai Y, Wu N, Fan Y (2005) Overexpression of one thermoacidophilic alpha-amylase gene and analysis of recombinant enzyme heterogeneity. Chin High Technol Lett 15:63–68
Zhang W, Hywood Potter KJ, Plantz BA, Schlegel VL, Smith LA, Meagher MM (2003) Pichia pastoris fermentation with mixed-feeds of glycerol and methanol: growth kinetics and production improvement. J Ind Microbiol Biotechnol 30:210–215
Zhao X, Huo K, Li Y (2000) Synonymous codon usage in Pichia pastoris. Chin J Biotechnol 16:308–311
Acknowledgment
This research was supported by the National High Technology Research and Development Program of China (863 program, Grant no. 2006AA02Z213 and 2007AA100601).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Huang, H., Yang, P., Luo, H. et al. High-level expression of a truncated 1,3-1,4-β-d-glucanase from Fibrobacter succinogenes in Pichia pastoris by optimization of codons and fermentation. Appl Microbiol Biotechnol 78, 95–103 (2008). https://doi.org/10.1007/s00253-007-1290-4
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-007-1290-4