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PduP is a coenzyme-a-acylating propionaldehyde dehydrogenase associated with the polyhedral bodies involved in B12-dependent 1,2-propanediol degradation by Salmonella enterica serovar Typhimurium LT2

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Abstract

Salmonella enterica forms polyhedral bodies involved in coenzyme-B12-dependent 1,2-propanediol degradation. Prior studies showed that these bodies consist of a proteinaceous shell partly composed of the PduA protein, coenzyme-B12-dependent diol dehydratase, and additional unidentified proteins. In this report, we show that the PduP protein is a polyhedral-body-associated CoA-acylating aldehyde dehydrogenase important for 1,2-propanediol degradation by S. enterica. A PCR-based method was used to construct a precise nonpolar deletion of the gene pduP. The resulting pduP deletion strain grew poorly on 1,2-propanediol minimal medium and expressed 105-fold less propionaldehyde dehydrogenase activity (0.011 μmol min−1 mg−1) than did wild-type S. enterica grown under similar conditions (1.15 μmol min−1 mg−1). An Escherichia coli strain was constructed for high-level production of His8-PduP, which was purified by nickel-affinity chromatography and shown to have 15.2 μmol min−1 mg−1 propionaldehyde dehydrogenase activity. Analysis of assay mixtures by reverse-phase HPLC and mass spectrometry established that propionyl-CoA was the product of the PduP reaction. For subcellular localization, purified His8-PduP was used as antigen for the preparation of polyclonal antiserum. The antiserum obtained was shown to have high specificity for the PduP protein and was used in immunogold electron microscopy studies, which indicated that PduP was associated with the polyhedral bodies involved in 1,2-propanediol degradation. Further evidence for the localization of the PduP enzyme was obtained by showing that propionaldehyde dehydrogenase activity co-purified with the polyhedral bodies. The fact that both Ado-B12-dependent diol dehydratase and propionaldehyde dehydrogenase are associated with the polyhedral bodies is consistent with the proposal that these structures function to minimize propionaldehyde toxicity during the growth of S. enterica on 1,2-propanediol.

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References

  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    PubMed  Google Scholar 

  • Berkowitz D, Hushon JM, Whitfield HJ, Jr., Roth J, Ames BN (1968) Procedure for identifying nonsense mutations. J Bacteriol 96:215–220

    CAS  PubMed  Google Scholar 

  • Bobik TA, Rasche ME (2003) HPLC assay for methylmalonyl-CoA epimerase. Anal Bioanal Chem 375:344–349

    CAS  PubMed  Google Scholar 

  • Bobik TA, Ailion M, Roth JR (1992) A single regulatory gene integrates control of vitamin B12 synthesis and propanediol degradation. J Bacteriol 174:2253–2266

    CAS  PubMed  Google Scholar 

  • Bobik TA, Xu Y, Jeter RM, Otto KE, Roth JR (1997) Propanediol utilization genes (pdu) of Salmonella typhimurium: three genes for the propanediol dehydratase. J Bacteriol 179:6633–6639

    CAS  PubMed  Google Scholar 

  • Bobik TA, Havemann GD, Busch RJ, Williams DS, Aldrich HC (1999) The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B12-dependent 1,2-propanediol degradation. J Bacteriol 181:5967–5975

    CAS  PubMed  Google Scholar 

  • Chen P, Andersson DI, Roth JR (1994) The control region of the pdu/cob regulon in Salmonella typhimurium. J Bacteriol 176:5474–5482

    CAS  PubMed  Google Scholar 

  • Conner CP, Heithoff DM, Julio SM, Sinsheimer RL, Mahan MJ (1998) Differential patterns of acquired virulence genes distinguish Salmonella strains. Proc Natl Acad Sci USA 95:4641–4645

    Article  CAS  PubMed  Google Scholar 

  • Davis RW, Botstein D, Roth JR (1980) Advanced bacterial genetics: a manual for genetic engineering. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Dawson RMC, Elliott DC, Elliott WH, Jones KM (eds) (1969) Data for biochemical research, 2nd edn. Oxford University Press, Oxford

  • Harlow E, Lane D (1988) Antibodies: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

  • Havemann GD, Bobik TA (2003) Protein content of polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol in Salmonella enterica serovar Typhimurium LT2. J Bacteriol 185:5086–5095

    Article  CAS  PubMed  Google Scholar 

  • Havemann GD, Sampson EM, Bobik TA (2002) PduA is a shell protein of polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol in Salmonella enterica serovar Typhimurium LT2. J Bacteriol 184:1253–1261

    CAS  PubMed  Google Scholar 

  • Heithoff DM, Conner CP, Hentschel U, Govantes F, Hanna PC, Mahan MJ (1999) Coordinate intracellular expression of Salmonella genes induced during infection. J Bacteriol 181:799–807

    CAS  PubMed  Google Scholar 

  • Horswill A, Escalante-Semerena J (1997) Propionate catabolism in Salmonella typhimurium LT2: two divergently transcribed units comprise the prp locus at 8.5 centisomes, prpR encodes a member of the sigma-54 family of activators, and the prpBCDE genes constitute an operon. J Bacteriol 179:928–940

    CAS  PubMed  Google Scholar 

  • Johnson CL, Pechonick E, Park SD, Havemann GD, Leal NA, Bobik TA (2001) Functional genomic, biochemical, and genetic characterization of the Salmonella pduO gene, an ATP:cob(I)alamin adenosyltransferase gene. J Bacteriol 183:1577–1584

    Article  CAS  PubMed  Google Scholar 

  • Kessler D, Leibrecht I, Knappe J (1991) Pyruvate-formate-lyase-deactivase and acetyl-CoA reductase activities of Escherichia coli reside on a polymeric protein particle encoded by adhE. FEBS Lett 281:59–63

    Article  CAS  PubMed  Google Scholar 

  • Leal NA, Park SD, Kima PE, Bobik TA (2003) Identification of the human and bovine ATP: cob(I)alamin adenosyltransferase cDNAs based on complementation of a bacterial mutant. J Biol Chem 278:9227–9234

    Article  CAS  PubMed  Google Scholar 

  • Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

  • Miller VL, Mekalanos JJ (1988) A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J Bacteriol 170:2575–2583

    CAS  PubMed  Google Scholar 

  • Obradors N, Badia J, Baldoma L, Aguilar J (1988) Anaerobic metabolism of the l-rhamnose fermentation product 1,2-propanediol in Salmonella typhimurium. J Bacteriol 170:2159–2162

    CAS  PubMed  Google Scholar 

  • Palacios S, Starai VJ, Escalante-Semerena JC (2003) Propionyl coenzyme A is a common intermediate in the 1,2-propanediol and propionate catabolic pathways needed for expression of the prpBCDE operon during growth of Salmonella enterica on 1,2-propanediol. J Bacteriol 185:2802–2810

    Article  CAS  PubMed  Google Scholar 

  • Price GD, Maeda S, Omata T, Badger MR (2002) Modes of active inorganic carbon uptake in the cyanobacterium, Synechococcus sp PCC7942. Funct Plant Biol 29:131–149

    Article  CAS  Google Scholar 

  • Price-Carter M, Tingey J, Bobik TA, Roth JR (2001) The alternative electron acceptor tetrathionate supports B12-dependent anaerobic growth of Salmonella enterica serovar Typhimurium on ethanolamine or 1,2-propanediol. J Bacteriol 183:2463–2475

    Article  CAS  PubMed  Google Scholar 

  • Rondon MR, Kazmierczak R, Escalante-Semerena JC (1995) Glutathione is required for maximal transcription of the cobalamin biosynthetic and 1,2-propanediol utilization (cob/pdu) regulon and for the catabolism of ethanolamine, 1,2-propanediol, and propionate in Salmonella typhimurium LT2. J Bacteriol 177:5434–5439

    CAS  PubMed  Google Scholar 

  • Roth JR, Lawrence JG, Bobik TA (1996) Cobalamin (coenzyme B12): synthesis and biological significance. Annu Rev Microbiol 50:137–181

    Article  CAS  PubMed  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Schmieger H (1971) A method for detection of phage mutants with altered transducing ability. Mol Gen Genet 110:378–381

    CAS  PubMed  Google Scholar 

  • Shively JM, English RS (1991) The carboxysome, a prokaryotic organelle. Can J Bot 69:957–962

    CAS  Google Scholar 

  • Shively JM, van Keulen G, Meijer WG (1998) Something from almost nothing: carbon dioxide fixation in chemoautotrophs. Annu Rev Microbiol 52:191–230

    CAS  PubMed  Google Scholar 

  • Shively JM, English RS, Baker SH, Cannon GC (2001) Carbon cycling: the prokaryotic contribution. Curr Opin Microbiol 4:301–306

    Article  CAS  PubMed  Google Scholar 

  • Stojiljkovic I, Baumler AJ, Heffron F (1995) Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster. J Bacteriol 177:1357–1366

    CAS  PubMed  Google Scholar 

  • Toraya T, Honda S, Fukui S (1979) Fermentation of 1,2-propanediol and 1,2-ethanediol by some genera of Enterobacteriaceae, involving coenzyme B12-dependent diol dehydratase. J Bacteriol 139:39–47

    CAS  PubMed  Google Scholar 

  • Vogel HJ, Bonner DM (1956) Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem 218:97–106

    CAS  Google Scholar 

  • Walter D, Ailion M, Roth J (1997) Genetic characterization of the pdu operon: use of 1,2-propanediol in Salmonella typhimurium. J Bacteriol 179:1013–1022

    CAS  PubMed  Google Scholar 

  • Warren JW, Walker JR, Roth JR, Altman E (2000) Construction and characterization of a highly regulable expression vector, pLAC11, and its multipurpose derivatives, pLAC22 and pLAC33. Plasmid 44:138–151

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

This work was supported by grant GM59486 from the National Institutes of Health, and by the Florida Agricultural Experiment Station. We thank H.C. Aldrich and D.S. Williams for their invaluable assistance with the electron microscopy studies, and Scott McMillen for carrying out the MALDI-TOF MS analyses. Florida Agricultural Experiment Station Journal Series no. R-09739.

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Correspondence to Thomas A. Bobik.

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Leal, N.A., Havemann, G.D. & Bobik, T.A. PduP is a coenzyme-a-acylating propionaldehyde dehydrogenase associated with the polyhedral bodies involved in B12-dependent 1,2-propanediol degradation by Salmonella enterica serovar Typhimurium LT2. Arch Microbiol 180, 353–361 (2003). https://doi.org/10.1007/s00203-003-0601-0

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