Summary
The sizes and map positions of five polyadenylated transcripts from the TR region of the octopine-type tobacco crown gall tumor E9 have been determined by Northern blot and S1 nuclease analyses. These RNAs range in size from 780 to 1,600 bases, and their relative abundancies vary according to the growth conditions of the tumor cultures. Different relative abundancies of these transcripts have also been detected in the tobacco tumor line 15955/1 and the sunflower tumor lines 15W, S4-2, and S4-4. The possible functions of several of these TR T-DNA genes are discussed.
Similar content being viewed by others
References
Beltz GA, Jacobs KA, Eickbush TH, Cherbas PT, Kafatos FC (1983) Isolation of multigene families and determination of homologies by filter hybridization methods. In: Wu R, Grossman L, Moldave K (eds) Recombinant DNA Part B. Methods in enzymology, vol 100. Academic Press, New York, pp 266–285
Benoist C, O'Hare K, Breathnach R, Chambon P (1980) The ovalbumin gene-sequence of putative control regions. Nucl Acids Res 8:127–142
Birnboim NC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl Acids Res 7:1513–1523
Blair DG, Sherratt DJ, Clewell DB, Helinski DR (1972) Isolation of supercoiled colicinogenic factor E1 DNA sensitive to ribonuclease and alkali. Proc Natl Acad Sci USA 69:2518–2522
Bolivar F, Rodriguez R, Greene PJ, Betlach M, Heyneker HL, Boyer HW (1977) Construction and characterization of new cloning vehicles. Gene 2:95–113
Bomhoff G, Klapwijk PM, Kester HCM, Schilperoort RA, Hernalsteens JP, Schell J (1976) Octopine and nopaline synthesis and breakdown genetically controlled by a plasmid of Agrobacterium tumefaciens. Mol Gen Genet 145:177–181
Braun AC (1958) A physiological basis for autonomous growth of the crown gall tumor cell. Proc Natl Acad Sci USA 44:344–349
Darnell JE (1982) Variety in the level of gene control in eukaryotic cells. Nature (London) 297:365–371
DeGreve H, Dhaese P, Seurinck J, Lemmers M, Van Montagu M, Schell J (1982) Nucleotide sequence and transcript maps of the Agrobacterium tumefaciens Ti plasmid-encoded octopine synthase gene. J Mol Appl Genet 1:449–511
Depicker A, Stachel S, Dhaese P, Zambryski P, Goodman HM (1982) Nopaline synthase: transcript mapping and DNA sequence. J Mol Appl Genet 1:561–573
Efstratiadis A, Posakony J, Maniatis T, Lawn R, O'Connell C, Spiritz R, DeRiel J, Forget B, Weissman S, Slightom J, Blechl A, Smithies O, Baralle F, Shoulders C, Proudfoot N (1980) The structure and evolution of the human β-globin gene family. Cell 21:653–668
Fitzgerald M, Shenk T (1981) The sequence 5′-AAUAAA-3′ forms part of the recognition site for polyadenylation of late SV40 mRNAs. Cell 24:251–260
Garfinkel DJ, Simpson RB, Ream LW, White FF, Gordon MP, Nester EW (1981) Genetic analysis of crown gall: fine structure map of the T-DNA by site-directed mutagenesis. Cell 27:143–153
Gelvin SB, Gordon MP, Nester EW, Aronson AI (1981) Transcription of the Agrobacterium Ti plasmid in the bacterium and in crown gall tumors. Plasmid 6:17–29
Gelvin SB, Karcher SJ, DiRita VJ (1983) Methylation of the T-DNA in Agrobacterium tumefaciens and in several crown gall tumors. Nucl Acids Res 11:159–174
Gelvin SB, Thomashow MF, McPherson JC, Gordon MP, Nester EW (1982) Sizes and map positions of several plasmid DNA encoded transcripts in octopine-type crown gall tumors. Proc Natl Acad Sci USA 79:76–80
Gurley WB, Kemp JD, Albert MJ, Sutton DW, Callis J (1979) Transcription of Ti plasmid-derived sequences in three octopine-type crown gall tumor lines. Proc Natl Acad Sci USA 76:2828–2832
Huyon P, Chilton M-D, Petit A, Tempé J (1980) Agropine in “null type” crown gall tumors: evidence for the generality of the opine concept. Proc Natl Acad Sci USA 77:2693–2697
Kahn M, Kolter R, Thomas C, Figurski D, Meyer R, Remaut E, Helinski DR (1979) Plasmid cloning vehicles derived from plasmids ColE1, F, R6K, and RK2. In: Wu R (ed) Recombinant DNA Part A. Methods in enzymology, vol 68. Academic Press, New York, pp 268–280
McDonnell MW, Simon MN, Studier FW (1977) Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels. J Mol Biol 110:119–146
Messing J (1983) New M13 vectors for clonig. In: Wu R, Grossman L, Moldave K (eds) Recombinant DNA Part C. Methods in enzymology, vol 101. Academic Press, New York, pp 20–78
Murai N, Kemp J (1982) T-DNA of pTi-15955 from Agrobacterium tumefaciens is transcribed into a minimum of seven polyadenylated RNAs in a sunflower crown gall tumor. Nucl Acids Res 10:1679–1689
Murai N, Kemp J (1982) Octopine synthase mRNA isolated from sunflower crown gall callus is homologous to the Ti plasmid of Agrobacterium tumefaciens. Proc Natl Acad Sci USA 79:86–90
Ooms G, Hooykaas PJJ, Van Veen RJM, Van Beelen P, Regensburg-Tuink TJG, Schilperoort RA (1982) Octopine Ti-plasmid deletion mutants of Agrobacterium tumefaciens with emphasis on the right side of the T-region. Plasmid 7:15–29
Petit A, David C, Dahl GA, Ellis JG, Guyon P, Casse-Delbart F, Tempé J (1983) Further extension of the opine concept: Plasmids in Agrobacterium rhizogenes cooperate for opine degradation. Mol Gen Genet 190:204–214
Razin A, Friedman J (1981) DNA methylation and its possible biological roles. Prog Nucl Acids Res Mol Biol 25:33–52
Shenk T (1981) Transcriptional control region: nucleotide sequence requirements for initiation by RNA polymerase II and III. In: Shatkin AJ (ed) Initiation signals in viral gene expression. Current topics in microbiology and immunology, vol 93. Springer-Verlag, Berlin, pp 25–46
Sutcliffe JG (1978) Complete nucleotide sequence of the Escherichia coli plasmid pBR322. Cold Spring Harbor Symp Quant Biol 43:77–90
Thomashow MF, Nutter R, Montoya AL, Gordon MP, Nester EW (1980) Integration and organization of Ti-plasmid sequences in crown gall tumors. Cell 19:729–739
Wasylyk B, Derbyshire R, Guy A, Molko D, Roget A, Teolue R, Chambon P (1980) Specific in vitro transcription of conalbumin gene is drastically decreased by a single-point mutation in TATA box homology sequence. Proc Natl Acad Sci USA 77:7024–7028
Willmitzer L, Otten L, Simons G, Schmalenbach W, Schröder J, Schröder G, Van Montagu M, deVos G, Schell J (1981) Nuclear and polysomal transcripts of T-DNA in octopine crown gall suspension and callus cultures. Mol Gen Genet 182:225–262
Willmitzer L, Simons G, Schell J (1982) The TL-DNA in octopine crown gall tumors codes for seven well defined polyadenylated transcripts. EMBO J 1:139–146
Yadav NS, Postele K, Saiki RK, Thomashow MF, Chilton M-D (1980) T-DNA of crown gall teratoma is covalently joined to host plant DNA. Nature (London) 287:458–461
Author information
Authors and Affiliations
Additional information
Communicated by R. Goldberg
Rights and permissions
About this article
Cite this article
Karcher, S.J., DiRita, V.J. & Gelvin, S.B. Transcript analysis of TR DNA in octopine-type crown gall tumors. Molec. Gen. Genet. 194, 159–165 (1984). https://doi.org/10.1007/BF00383511
Received:
Issue Date:
DOI: https://doi.org/10.1007/BF00383511