Abstract
Boosted by the development of cutting-edge “omics” technologies, powerful tools have been developed to support traditional fruit crop research. Comparative “omics” studies have been extensively applied to investigate complex biological processes, such as fruit development and ripening, pointing out unique pathways, genes and proteins involved in these processes. Due to the availability of new technologies, reduced experimental costs, and optimized protein extraction protocols for recalcitrant plant tissues, proteomics is rapidly expanding, reaching fruit species regarded as non-model plant systems. Olea europaea can be undoubtedly ranked as a non-model plant species, thus suffering from a dearth of proteomic investigation when compared to other fruit species. In this chapter, we will briefly travel through the proteomic history of olives as an example of a non-model tree crop, characterized by a proteomic investigation still in its infancy but appearing to be promising. We will highlight what has been already done and we will draw the attention of the reader especially on what can be still done.
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References
Barry CS, Giovannoni JJ (2007) Ethylene and fruit ripening. J Plant Growth Regul 26:143–159
Defilippi BG, Manriquez D, Luengwilai K, González-Agüero M (2009) Aroma volatiles: biosynthesis and mechanisms of modulation during fruit ripening. Adv Bot Res 50:1–37
Pech J-C, Bouzayen M, Latché A (2008) Climacteric fruit ripening: ethylene-dependent and independent regulation of ripening pathways in melon fruit. Plant Sci 175:114–120
Trainotti L, Tadiello A, Casadoro G (2007) The involvement of auxin in the ripening of climacteric fruits comes of age: the hormone plays a role of its own and has an intense interplay with ethylene in ripening peaches. J Exp Bot 58:3299–3308
Ziosi V, Bonghi C, Bregoli AM, Trainotti L, Biondi S, Sutthiwal S et al (2008) Jasmonate-induced transcriptional changes suggest a negative interference with the ripening syndrome in peach fruit. J Exp Bot 59:563–573
Symons GM, Davies C, Shavrukov Y, Dry IB, Reid JB, Thomas MR (2006) Grapes on steroids. Brassinosteroids are involved in grape berry ripening. Plant Physiol 140:150–158
Giovannoni J (2001) Molecular biology of fruit maturation and ripening. Annu Rev Plant Physiol Plant Mol Biol 52:725–749
Gapper NE, Giovannoni JJ, Watkins CB (2014) Understanding development and ripening of fruit crops in an ‘omics’ era. Hortic Res 1:14034
Palma JM, Corpas FJ, Luís A (2011) Proteomics as an approach to the understanding of the molecular physiology of fruit development and ripening. J Proteomics 74:1230–1243
Carpentier SC, Panis B, Vertommen A, Swennen R, Sergeant K, Renaut J et al (2008) Proteome analysis of non-model plants: a challenging but powerful approach. Mass Spectrom Rev 27:354–377
Righetti PG, Esteve C, D’amato A, Fasoli E, Luisa Marina M, Concepcion Garcia M (2015) A sarabande of tropical fruit proteomics: avocado, banana, and mango. Proteomics 15:1639–1645
Rocco M, D’ambrosio C, Arena S, Faurobert M, Scaloni A, Marra M (2006) Proteomic analysis of tomato fruits from two ecotypes during ripening. Proteomics 6:3781–3791
Carpentier SC, America T (2014) Proteome analysis of orphan plant species, fact or fiction? Plant Proteomics: Meth Protocols 333–346
Coni E, Di Benedetto R, Di Pasquale M, Masella R, Modesti D, Mattei R et al (2000) Protective effect of oleuropein, an olive oil biophenol, on low density lipoprotein oxidizability in rabbits. Lipids 35:45–54
Conde C, Delrot S, Geros H (2008) Physiological, biochemical and molecular changes occurring during olive development and ripening. J Plant Physiol 165:1545–1562
Zamora R, Alaiz M, Hidalgo FJ (2001) Influence of cultivar and fruit ripening on olive (Olea europaea) fruit protein content, composition, and antioxidant activity. J Agric Food Chem 49:4267–4270
Koidis A, Boskou D (2006) The contents of proteins and phospholipids in cloudy (veiled) virgin olive oils. Eur J Lipid Sci Technol 108:323–328
Hidalgo FJ, Alaiz M, Zamora R (2001) Determination of peptides and proteins in fats and oils. Anal Chem 73:698–702
Esteve C, Canas B, Moreno-Gordaliza E, Del Rio C, Garcia MC, Marina ML (2011) Identification of olive (Olea europaea) pulp proteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and nano-liquid chromatography tandem mass spectrometry. J Agric Food Chem 59:12093–12101
Esteve C, Del Rio C, Marina ML, Garcia MC (2011) Development of an ultra-high performance liquid chromatography analytical methodology for the profiling of olive (Olea europaea L.) pulp proteins. Anal Chim Acta 690:129–134
Boschetti E, Righetti PG (2014) Plant proteomics methods to reach low-abundance proteins. Plant Proteomics: Meth Protocols 111–129
Esteve C, D’amato A, Marina ML, Garcia MC, Citterio A, Righetti PG (2012) Identification of olive (Olea europaea) seed and pulp proteins by nLC-MS/MS via combinatorial peptide ligand libraries. J Proteomics 75:2396–2403
Capriotti AL, Cavaliere C, Foglia P, Piovesana S, Samperi R, Stampachiacchiere S et al (2013) Proteomic platform for the identification of proteins in olive (Olea europaea) pulp. Anal Chim Acta 800:36–42
Banilas G, Moressis A, Nikoloudakis N, Hatzopoulos P (2005) Spatial and temporal expressions of two distinct oleate desaturases from olive (Olea europaea L.). Plant Sci 168:547–555
Palomares O, Villalba M, Quiralte J, Polo F, Rodriguez R (2005) 1, 3-β-glucanases as candidates in latex–pollen–vegetable food cross-reactivity. Clin Exp Allergy 35:345–351
Salas JNJ, Sánchez J (1999) Hydroperoxide lyase from olive (Olea europaea) fruits. Plant Sci 143:19–26
Alagna F, Mariotti R, Panara F, Caporali S, Urbani S, Veneziani G et al (2012) Olive phenolic compounds: metabolic and transcriptional profiling during fruit development. BMC Plant Biol 12:162
Ortega-García F, Blanco S, Peinado MÁ, Peragón J (2008) Polyphenol oxidase and its relationship with oleuropein concentration in fruits and leaves of olive (Olea europaea) cv. ‘Picual’trees during fruit ripening. Tree Physiol 28:45–54
Nesvizhskii AI, Aebersold R (2005) Interpretation of shotgun proteomic data: the protein inference problem. Mol Cell Proteomics 4:1419–1440
Bianco L, Alagna F, Baldoni L, Finnie C, Svensson B, Perrotta G (2013) Proteome regulation during Olea europaea fruit development. PLoS ONE 8:e53563
Isaacson T, Damasceno CM, Saravanan RS, He Y, Catalá C, Saladié M et al (2006) Sample extraction techniques for enhanced proteomic analysis of plant tissues. Nat Protoc 1:769–774
Alagna F, D’agostino N, Torchia L, Servili M, Rao R, Pietrella M et al. (2009) Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development. BMC Genom 10:399
Amemiya T, Kanayama Y, Yamaki S, Yamada K, Shiratake K (2006) Fruit-specific V-ATPase suppression in antisense-transgenic tomato reduces fruit growth and seed formation. Planta 223:1272–1280
Faurobert M, Mihr C, Bertin N, Pawlowski T, Negroni L, Sommerer N et al (2007) Major proteome variations associated with cherry tomato pericarp development and ripening. Plant Physiol 143:1327–1346
Clark GB, Sessions A, Eastburn DJ, Roux SJ (2001) Differential expression of members of the annexin multigene family in Arabidopsis. Plant Physiol 126:1072–1084
Konopka-Postupolska D (2007) Annexins: putative linkers in dynamic membrane-cytoskeleton interactions in plant cells. Protoplasma 230:203–215
Proietti P, Nasini L, Famiani F (2006) Effect of different leaf-to-fruit ratios on photosynthesis and fruit growth in olive (Olea europaea L.). Photosynthetica 44:275–285
Sánchez J (1995) Olive oil biogenesis. Contribution of fruit photosynthesis. In: Plant lipid metabolism. Springer, Berlin, pp 564–566
Sánchez J, Harwood JL (2002) Biosynthesis of triacylglycerols and volatiles in olives. Eur J Lipid Sci Technol 104:564–573
Corrado G, Alagna F, Rocco M, Renzone G, Varricchio P, Coppola V et al (2012) Molecular interactions between the olive and the fruit fly Bactrocera oleae. BMC Plant Biol 12:1
Van De Ven WT, Levesque CS, Perring TM, Walling LL (2000) Local and systemic changes in squash gene expression in response to silverleaf whitefly feeding. Plant Cell 12:1409–1423
Xiong Y, Defraia C, Williams D, Zhang X, Mou Z (2009) Characterization of Arabidopsis 6-phosphogluconolactonase T-DNA insertion mutants reveals an essential role for the oxidative section of the plastidic pentose phosphate pathway in plant growth and development. Plant Cell Physiol 50:1277–1291
Konno K (2011) Plant latex and other exudates as plant defense systems: roles of various defense chemicals and proteins contained therein. Phytochemistry 72:1510–1530
Muleo R, Cavallini A, Perrotta G, Baldoni L, Morgante M, Velasco R (2012) Olive tree genomic. INTECH Open Access Publisher, Rijeka
Agrawal GK, Pedreschi R, Barkla BJ, Bindschedler LV, Cramer R, Sarkar A et al (2012) Translational plant proteomics: a perspective. J Proteomics 75:4588–4601
Armengaud J, Trapp J, Pible O, Geffard O, Chaumot A, Hartmann EM (2014) Non-model organisms, a species endangered by proteogenomics. J Proteomics 105:5–18
Parra R, Paredes MA, Sanchez-Calle IM, Gomez-Jimenez MC (2013) Comparative transcriptional profiling analysis of olive ripe-fruit pericarp and abscission zone tissues shows expression differences and distinct patterns of transcriptional regulation. BMC Genom 14:1
Righetti PG, Fasoli E, D’amato A, Boschetti E (2014) The “Dark side” of food stuff proteomics: the CPLL-marshals investigate. Foods 3:217–237
Roux-Dalvai F, De Peredo AG, Simó C, Guerrier L, Bouyssié D, Zanella A et al (2008) Extensive analysis of the cytoplasmic proteome of human erythrocytes using the peptide ligand library technology and advanced mass spectrometry. Mol Cell Proteomics 7:2254–2269
Hartwig S, Czibere A, Kotzka J, Paßlack W, Haas R, Eckel J et al (2009) Combinatorial hexapeptide ligand libraries (ProteoMiner™): an innovative fractionation tool for differential quantitative clinical proteomics. Arch Physiol Biochem 115:155–160
Boschetti E, Righetti PG (2013) Low-abundance proteome discovery: state of the art and protocols. Newnes
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Bianco, L., Perrotta, G. (2016). Fruit Development and Ripening: Proteomic as an Approach to Study Olea europaea and Other Non-model Organisms. In: Salekdeh, G. (eds) Agricultural Proteomics Volume 1. Springer, Cham. https://doi.org/10.1007/978-3-319-43275-5_3
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DOI: https://doi.org/10.1007/978-3-319-43275-5_3
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