Abstract
Butanol inhibits bacterial activity by destroying the cell membrane of Clostridium acetobutylicum strains and altering functionality. Butanol toxicity also results in destruction of the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS), thereby preventing glucose transport and phosphorylation and inhibiting transmembrane transport and assimilation of sugars, amino acids, and other nutrients. In this study, based on the addition of exogenous butanol, the tangible macro indicators of changes in the carbon ion beam irradiation-mutant Y217 morphology were observed using scanning electron microscopy (SEM). The mutant has lower microbial adhesion to hydrocarbon (MATH) value than C. acetobutylicum ATCC 824 strain. FDA fluorescence intensity and conductivity studies demonstrated the intrinsically low membrane permeability of the mutant membrane, with membrane potential remaining relatively stable. Monounsaturated FAs (MUFAs) accounted for 35.17% of the mutant membrane, and the saturated fatty acids (SFA)/unsaturated fatty acids (UFA) ratio in the mutant cell membrane was 1.65. In addition, we conducted DNA-level analysis of the mutant strain Y217. Expectedly, through screening, we found gene mutant sites encoding membrane-related functions in the mutant, including ATP-binding cassette (ABC) transporter-related genes, predicted membrane proteins, and the PTS transport system. It is noteworthy that an unreported predicted membrane protein (CAC 3309) may be related to changes in mutant cell membrane properties.
Key points
• Mutant Y217 exhibited better membrane integrity and permeability.
• Mutant Y217 was more resistant to butanol toxicity.
• Some membrane-related genes of mutant Y217 were mutated.
Similar content being viewed by others
Data availability
The raw sequence data reported in this paper have been deposited in the Genome Sequence Archive (Genomics, Proteomics & Bioinformatics 2017) in the National Genomics Data Center (Nucleic Acids Res 2020), Beijing Institute of Genomics (China National Center for Bioinformation), Chinese Academy of Sciences, under accession number CRA003426 that are publicly accessible at https://bigd.big.ac.cn/gsa.
References
Bangham AD, Standish MM, Miller N (1965) Cation permeability of phospholipid model membranes: effect of narcotics. Nature 208(5017):1295–1297. https://doi.org/10.1038/2081295a0
Beney L, Gervais P (2001) Influence of the fluidity of the membrane on the response of microorganisms to environmental stresses. Appl Microbiol Biotechnol 57(1-2):34–42. https://doi.org/10.1007/s002530100754
Beutner G, Alavian KN, Jonas EA, Porter GA (2016) The mitochondrial permeability transition pore and ATP synthase. In: singh H., sheu SS. (eds) pharmacology of mitochondria. Handb Exp Pharmacol vol 240. Springer, Cham. doi:https://doi.org/10.1007/164_2016_87
Biro I, Pezeshki S, Weingart H, Winterhalter M, Kleinekathofer U (2010) Comparing the temperature-dependent conductance of the two structurally similar E. coli porins OmpC and OmpF. Biophys J 98(9):1830–1839. https://doi.org/10.1016/j.bpj.2010.01.026
Cairns TC, Zheng X, Zheng P, Sun J, Meyer V (2019) Moulding the mould: understanding and reprogramming filamentous fungal growth and morphogenesis for next generation cell factories. Biotechnol Biofuels 12:77. https://doi.org/10.1186/s13068-019-1400-4
Cao G, Zhang M, Miao J, Li W, Wang J, Lu D, Xia J (2015) Effects of X-ray and carbon ion beam irradiation on membrane permeability and integrity in Saccharomyces cerevisiae cells. J Radiat Res 56:294–304. https://doi.org/10.1093/jrr/rru114
Chen G, Bei Q, Huang T, Wu Z (2017) Tracking of pigment accumulation and secretion in extractive fermentation of Monascus anka GIM 3.592. Microb Cell Fact 16:172. https://doi.org/10.1186/s12934-017-0786-6
Enkavi G, Javanainen M, Kulig W, Rog T, Vattulainen I (2019) Multiscale simulations of biological membranes: the challenge to understand biological phenomena in a living substance. Chem Rev 119(9):5607–5774. https://doi.org/10.1021/acs.chemrev.8b00538
Ezeji T, Milne C, Price ND, Blaschek HP (2010) Achievements and perspectives to overcome the poor solvent resistance in acetone and butanol-producing microorganisms. Appl Microbiol Biotechnol 85(6):1697–1712. https://doi.org/10.1007/s00253-009-2390-0
Faivre D, Schüler D (2008) Magnetotactic bacteria and magnetosomes. Chem Rev 108(11):4875–4898. https://doi.org/10.1021/cr078258w
Fernandez I, Cornaciu I, Carrica MD, Uchikawa E, Hoffmann G, Sieira R, Goldbaum FA (2017) Three-dimensional structure of full-length NtrX, an unusual member of the NtrC family of response regulators. J Mol Biol 429(8):1192–1212. https://doi.org/10.1016/j.jmb.2016.12.022
Fonseca F, Penicaud C, Tymczyszyn EE, Gomez-Zavaglia A, Passot S (2019) Factors influencing the membrane fluidity and the impact on production of lactic acid bacteria starters. Appl Microbiol Biotechnol 103(17):6867–6883. https://doi.org/10.1007/s00253-019-10002-1
Gao R, Stock AM (2009) Biological insights from structures of two-component proteins. Annu Rev Microbiol 63:133–154. https://doi.org/10.1146/annurev.micro.091208.073214
Gao Y, Zhang M, Zhou X, Guo X, Lei C, Li W, Lu D (2020) Effects of carbon ion beam irradiation on butanol tolerance and production of Clostridium acetobutylicum. Front Microbiol 11:602774. https://doi.org/10.3389/fmicb.2020.602774
Guo J, Ho JCS, Chin H, Mark AE, Zhou C, Kjelleberg S, Seviour T (2019a) Response of microbial membranes to butanol: interdigitation vs. disorder. Phys Chem Chem Phys 21(22):11903–11915. https://doi.org/10.1039/c9cp01469a
Guo X, Zhang M, Gao Y, Cao G (2019b) A genome-wide view of mutations in respiration-deficient mutants of Saccharomyces cerevisiae selected following carbon ion beam irradiation. Appl Microbiol Biotechnol 103(4):1851–1864. https://doi.org/10.1007/s00253-019-09626-0
Hu S, Zheng H, Gu Y, Zhao J, Zhang W, Yang Y, Jiang W (2011) Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018. BMC Genomics 12:93. https://doi.org/10.1186/1471-2164-12-93
Inui M, Suda M, Kimura S, Yasuda K, Suzuki H, Toda H, Yukawa H (2008) Expression of Clostridium acetobutylicum butanol synthetic genes in Escherichia coli. Appl Microbiol Biotechnol 77(6):1305–1316. https://doi.org/10.1007/s00253-007-1257-5
Isken S, Bont JA (1998) Bacteria tolerant to organic solvents. Extremophiles 2(3):229–238. https://doi.org/10.1007/s007920050065
Jia K, Zhang Y, Li Y (2010) Systematic engineering of microorganisms to improve alcohol tolerance. Eng Life Sci 10(5):422–429. https://doi.org/10.1002/elsc.201000076
Joseph EK, Levine JD (2006) Mitochondrial electron transport in models of neuropathic and inflammatory pain. Pain 121(1):105–114. https://doi.org/10.1016/j.pain.2005.12.010
Lauga E, DiLuzio WR, Whitesides GM, Stone HA (2006) Swimming in circles: motion of bacteria near solid boundaries. Biophys J 90(2):400–412. https://doi.org/10.1529/biophysj.105.069401
Leclercq E, Taylor JF, Migaud H (2009) Morphological skin colour changes in teleosts. Fish Fish 11(2):159–193. https://doi.org/10.1111/j.1467-2979.2009.00346.x
Li S, Huang L, Ke C, Pang Z, Liu L (2020) Pathway dissection, regulation, engineering and application: lessons learned from biobutanol production by solventogenic clostridia. Biotechnol Biofuels 13:39. https://doi.org/10.1186/s13068-020-01674-3
Luo H, Zheng P, Bilal M, Xie F, Zeng Q, Zhu C, Wang Z (2020) Efficient bio-butanol production from lignocellulosic waste by elucidating the mechanisms of Clostridium acetobutylicum response to phenolic inhibitors. Sci Total Environ 710:136399. https://doi.org/10.1016/j.scitotenv.2019.136399
Nadell CD, Drescher K, Foster KR (2016) Spatial structure, cooperation and competition in biofilms. Nat Rev Microbiol 14(9):589–600. https://doi.org/10.1038/nrmicro.2016.84
National Genomics Data Center Members and Partners (2020) Database resources of the national genomics data center in 2020. Nucleic Acids Res 48(D1):D24–D33. https://doi.org/10.1093/nar/gkz913
Nicolaisen K, Hahn A, Schleiff E (2009) The cell wall in heterocyst formation by Anabaena sp. PCC 7120. J Basic Microbiol 49(1):5–24. https://doi.org/10.1002/jobm.200800300
Nolling J, Breton G, Omelchenko MV, Makarova KS, Zeng Q, Gibson R (2001) Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J Bacteriol 183(16):4823–4838. https://doi.org/10.1128/JB.183.16.4823-4838.2001
Okochi M, Kanie K, Kurimoto M, Yohda M (2008) Overexpression of prefoldin from the hyperthermophilic archaeum Pyrococcus horikoshii OT3 endowed Escherichia coli with organic solvent tolerance. Appl Microbiol Biotechnol 79(3):443–449. https://doi.org/10.1007/s00253-008-1450-1
Paczosa MK, Mecsas J (2016) Klebsiella pneumoniae: going on the offense with a strong defense. Microbiol Mol Biol Rev 80(3):629–661. https://doi.org/10.1128/MMBR.00078-15
Papadimitriou K, Alegria A, Bron PA, de Angelis M, Gobbetti M, Kleerebezem M (2016) Stress Physiology of Lactic Acid Bacteria. Microbiol Mol Biol Rev 80(3):837–890. https://doi.org/10.1128/MMBR.00076-15
Patakova P, Kolek J, Sedlar K, Koscova P, Branska B, Kupkova K (2018) Comparative analysis of high butanol tolerance and production in clostridia. Biotechnol Adv 36(3):721–738. https://doi.org/10.1016/j.biotechadv.2017.12.004
Patel DA, Henry JE, Good TA (2007) Attenuation of beta-amyloid-induced toxicity by sialic-acid-conjugated dendrimers: role of sialic acid attachment. Brain Res 1161:95–105. https://doi.org/10.1016/j.brainres.2007.05.055
Pianetti A, Sabatini L, Citterio B, Pierfelici L (2008) Changes in microbial populations in ready-to-eat vegetable salads during shelf-life. Ital J Food Sci 20(2):245–254. https://doi.org/10.1080/09637480802206389
Ravagnani A, Jennert KC, Steiner E, Grünberg R, Young M (2000) Spo0A directly controls the switch from acid to solvent production in solvent-forming clostridia. Mol Microbiol 37(5):1172–1185. https://doi.org/10.1046/j.1365-2958.2000.02071.x
Rice AJ, Park A, Pinkett HW (2014) Diversity in ABC transporters: type I, II and III importers. Crit Rev Biochem Mol Biol 49(5):426–437. https://doi.org/10.3109/10409238.2014.953626
Rosenberg M, Gutnick D, Rosenberg E (2006) Adherence of bacteria to hydrocarbons: A simple method for measuring cell-surface hydrophobicity. FEMS Microbiol Lett 9(1):29–33. https://doi.org/10.1111/j.1574-6968.1980.tb05599.x
Schwarz KM, Kuit W, Grimmler C, Ehrenreich A (2012) A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum--cellular behavior in adaptation to n-butanol. J Biotechnol 161(3):366–377. https://doi.org/10.1016/j.jbiotec.2012.03.018
Seo SO, Janssen H, Magis A, Wang Y, Lu T, Price ND (2017) Genomic, transcriptional, and phenotypic analysis of the glucose derepressed Clostridium beijerinckii mutant exhibiting acid crash phenotype. Biotechnol J 12(11). https://doi.org/10.1002/biot.201700182
Steiner E, Scott J, Minton NP, Winzer K (2012) An agr quorum sensing system that regulates granulose formation and sporulation in Clostridium acetobutylicum. Appl Environ Microbiol 78(4):1113–1122. https://doi.org/10.1128/AEM.06376-11
Vasylkivska M, Jureckova K, Branska B, Sedlar K, Kolek J, Provaznik I (2019) Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598. PLoS One 14(11):e0224560. https://doi.org/10.1371/journal.pone.0224560
Wang YQ, Song FH, Zhu JW (2017) GSA: Genome sequence archive. Genomics Proteomics Bioinf 15(1):14–18. https://doi.org/10.1016/j.gpb.2017.01.001
Weber FJ, Bont JA (1996) Adaptation mechanisms of microorganisms to the toxic effects of organic solvents on membranes. Biochim Biophys Acta 1286(3):225–245. https://doi.org/10.1016/S0304-4157(96)00010-X
Wilfrid JM (2015) The phosphotransferase system in solventogenic clostridia. J Mol Microbiol Biotechnol 25(2-3):129–142. https://doi.org/10.1159/000375125
Wisneski JA, Gertz EW, Neese RA, Mayr M (1987) Myocardial metabolism of free fatty acids. Studies with 14C-labeled substrates in humans. J Clin Invest 79(2):359–366. https://doi.org/10.1172/JCI112820
Xin X, Cheng C, Du G (2020) Metabolic engineering of histidine kinases in Clostridium beijerinckii for enhanced butanol production. Front Bioeng Biotechnol 8:214. https://doi.org/10.3389/fbioe.2020.00214
Xu M, Zhao J, Yu L, Tang IC, Xue C, Yang ST (2015) Engineering Clostridium acetobutylicum with a histidine kinase knockout for enhanced n-butanol tolerance and production. Appl Microbiol Biotechnol 99(2):1011–1022. https://doi.org/10.1007/s00253-014-6249-7
Xu M, Zhao J, Yu L, Yang ST (2017) Comparative genomic analysis of Clostridium acetobutylicum for understanding the mutations contributing to enhanced butanol tolerance and production. J Biotechnol 263:36–44. https://doi.org/10.1016/j.jbiotec.2017.10.010
Xue C, Zhao XQ, Liu CG, Chen LJ, Bai FW (2013) Prospective and development of butanol as an advanced biofuel. Biotechnol Adv 31(8):1575–1584. https://doi.org/10.1016/j.biotechadv.2013.08.004
Xue C, Zhao J, Chen L, Yang ST, Bai F (2017) Recent advances and state-of-the-art strategies in strain and process engineering for biobutanol production by Clostridium acetobutylicum. Biotechnol Adv 35(2):310–322. https://doi.org/10.1016/j.biotechadv.2017.01.007
Yang Y, Lang N, Zhang L, Wu H, Jiang W, Gu Y (2020a) A novel regulatory pathway consisting of a two-component system and an ABC-type transporter contributes to butanol tolerance in Clostridium acetobutylicum. Appl Microbiol Biotechnol 104(11):5011–5023. https://doi.org/10.1007/s00253-020-10555-6
Yang Z, Wang Z, Lei M, Zhu J, Yang Y, Wu S (2020b) Effects of Spo0A on Clostridium acetobutylicum with an emphasis on biofilm formation. World J Microbiol Biotechnol 36(6):80. https://doi.org/10.1007/s11274-020-02859-6
Yoo JH, Baek KH, Heo YS, Yong HI, Jo C (2021) Synergistic bactericidal effect of clove oil and encapsulated atmospheric pressure plasma against Escherichia coli O157:H7 and Staphylococcus aureus and its mechanism of action. Food Microbiol 93:103611. https://doi.org/10.1016/j.fm.2020.103611
Young KD (2006) The selective value of bacterial shape. Microbiol Mol Biol Rev 70(3):660–703. https://doi.org/10.1128/MMBR.00001-06
Zhang H, Chong H, Ching CB, Song H, Jiang R (2012) Engineering global transcription factor cyclic AMP receptor protein of Escherichia coli for improved 1-butanol tolerance. Appl Microbiol Biotechnol 94(4):1107–1117. https://doi.org/10.1007/s00253-012-4012-5
Acknowledgements
We sincerely thank the National Laboratory of HIRFL and the National Natural Science Foundation of China for giving us the opportunity to perform this project.
Funding
This study was supported by the National Natural Science Foundation of China (11975284 and 11905265), Science and Technology Service Network Initiative of Chinese Academy of Sciences (KFJ-STS-QYZD-197), Project of Lanzhou Science and Technology 2019-1-39.
Author information
Authors and Affiliations
Contributions
Y.G. and D.L. conceived, designed, and supervised the study. Y.G. and X.Z. wrote the paper. Y.G, C.R.L., and X.P.G. performed the experiments. Y.G. and M.M.Z. analyzed the data. Y.J.L., X.Z., and W.J.L. corrected the manuscript. W.J.L. and D.L. final approval of the version to be published. All authors read and approved the final manuscript.
Corresponding author
Ethics declarations
Ethics approval
This article does not contain any studies with human participants or animals performed by any of the authors.
Conflict of interest
The authors declare no competing interests.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
ESM 1
(PDF 141 kb)
Rights and permissions
About this article
Cite this article
Gao, Y., Zhou, X., Zhang, MM. et al. Response characteristics of the membrane integrity and physiological activities of the mutant strain Y217 under exogenous butanol stress. Appl Microbiol Biotechnol 105, 2455–2472 (2021). https://doi.org/10.1007/s00253-021-11174-5
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-021-11174-5