Abstract
The structure and electronic properties of crystalline purine are studied by ab initio calculations based on the density functional theory with regard to the dispersion interaction depending on the pressure up to 1 GPa. Purine is shown to be characterized by a negative linear compressibility, and its mechanism is determined at the microscopic level. Elastic constants, linear compressibilities, and elastic moduli of purine are calculated. Based on the electron density topological analysis, the hydrogen bond between purine molecules is investigated. The band gap of purine is calculated and its change with pressure is predicted.
Similar content being viewed by others
REFERENCES
D. G. Watson, R. M. Sweet, and R. E. Marsh. Acta Crystallogr., 1965, 19, 573-580. https://doi.org/10.1107/S0365110X65003900
M. T. Ruggiero, J. A. Zeitlera, and A. Erba. Chem. Commun., 2017, 53, 3781-3784. http://dx.doi.org/10.1039/C7CC00509A
A. D. Fortes, E. Suard, and K. S. Knight. Science, 2011, 331, 742-746. https://doi.org/10.1126/science.1198640
S. Hodgson, J. Adamson, S. Hunt, M. Cliffe, A. B. Cairns, and A. L. Goodwin. Chem. Commun., 2014, 50, 5264-5266. https://doi.org/10.1039/c3cc47032f
K. Dolabdjian, A. Kobald, C. P. Romao, and H. Meyer. Dalton Trans., 2018, 47, 10249-10255. https://doi.org/10.1039/C8DT02001A
A. B. Cairns and A. L. Goodwin. Phys. Chem. Chem. Phys. 2015, 17, 20449-20465. https://doi.org/10.1039/C5CP00442J
P. Serra-Crespo, A. Dikhtiarenko, E. Stavitski, J. Juan-Alcaniz, F. Kapteijn, F.-X. Coudert, and J. Gascon. CrystEngComm, 2015, 17, 276-280. https://doi.org/10.1039/C4CE00436A
S. Duyker, V. Peterson, G. Kearley, A. Studer, and C. Kepert. Nat. Chem., 2016, 8, 270-275. https://doi.org/10.1038/nchem.2431
D. V. Korabelnikov and Yu. N. Zhuravlev. Phys. Chem. Chem. Phys., 2016, 18, 33126-33133. https://doi.org/10.1039/c6cp06902a
D. V. Korabelnikov and Yu. N. Zhuravlev. J. Phys. Chem. A, 2017, 121, 6481-6490. https://doi.org/10.1021/acs.jpca.7b04776
D. V. Korabelnikov, I. A. Fedorov, and Yu. N. Zhuravlev. Phys. Solid State, 2021, 63, 1021-1027. https://doi.org/10.1134/S106378342107012X
T. P. Shakhtshneider, E. V. Boldyreva, M. A. Vasilchenko, H. Ahsbahs, and H. Uchtmann. J. Struct. Chem., 1999, 40(6), 892-898. https://doi.org/10.1007/BF02700697
E. V. Boldyreva, T. P. Shakhtsneider, and H. Ahsbahs. J. Therm. Anal. Calorim., 2002, 68, 437-452. https://doi.org/10.1023/A:1016079400592
E. V. Boldyreva. J. Mol. Struct., 2003, 647, 159-179. https://doi.org/10.1016/S0022-2860(02)00520-3
A. D. Becke. J. Chem. Phys., 2014, 140, 18A301. https://doi.org/10.1063/1.4869598
S. Hunter, P. Coster, A. Davidson, D. Millar, S. Parker, W. Marshall, R. Smith, C. Morrison, and C. Pulham. J. Phys. Chem. C, 2015, 119, 2322-2334. https://doi.org/10.1021/jp5110888
I. A. Fedorov and Yu. N. Zhuravlev. Chem. Phys. 2014, 436, 1-7. https://doi.org/10.1016/j.chemphys.2014.03.013
D. V. Korabelnikov and Yu. N. Zhuravlev. J. Phys. Chem. Solids, 2015, 87, 38-47. https://doi.org/10.1016/j.jpcs.2015.08.002
D. V. Korabelnikov and Yu. N. Zhuravlev. Phys. Solid State, 2017, 59, 254-261. https://doi.org/10.1134/S1063783417020123
I. A. Fedorov. Comput. Mater. Sci., 2017, 139, 252-259. https://doi.org/10.1016/j.commatsci.2017.08.004
S. Grimme, J. Antony, S. Ehrlich, and H. Krieg. J. Chem. Phys., 2010, 132, 154104. https://doi.org/10.1063/1.3382344
I. Fedorov, D. Korabelnikov, C. Nguyen, and A. Prosekov. Amino Acids, 2020, 52, 425-433. https://doi.org/10.1007/s00726-020-02818-3
I. Fedorov. J. Phys.: Condens. Matter., 2022, 34, 145702. https://doi.org/10.1088/1361-648X/ac4d5d
I. Fedorov and Yu. Zhuravlev. J. Struct. Chem., 2016, 57(6), 1074-1078. https://doi.org/10.1134/S0022476616060032
Yu. Zhuravlev and D. V. Korabelnikov. Mater. Today Commun., 2021, 28, 102509. https://doi.org/10.1016/j.mtcomm.2021.102509
P. Giannozzi, O. Andreussi, T. Brumme, O. Bunau, M. Buongiorno Nardelli, M. Calandra, R. Car, C. Cavazzoni, D. Ceresoli, M. Cococcioni, N. Colonna, I. Carnimeo, A. Dal Corso, S. de Gironcoli, P. Delugas, R. A. DiStasio, A. Ferretti, A. Floris, G. Fratesi, G. Fugallo, R. Gebauer, U. Gerstmann, F. Giustino, T. Gorni, J. Jia, M. Kawamura, H.-Y. Ko, A. Kokalj, E. Küçükbenli, M. Lazzeri, M. Marsili, N. Marzari, F. Mauri, N. L. Nguyen, H.-V. Nguyen, A. Otero-de-la-Roza, L. Paulatto, S. Poncé, D. Rocca, R. Sabatini, B. Santra, M. Schlipf, A. P. Seitsonen, A. Smogunov, I. Timrov, T. Thonhauser, P. Umari, N. Vast, X. Wu, and S. Baroni. J. Phys.: Condens. Matter., 2009, 21, 395502. https://doi.org/10.1088/1361-648X/aa8f79
A. M. Rappe, K. M. Rabe, E. Kaxiras, and J. D. Joannopoulos. Phys. Rev. B, 1990, 41, 1227-1230. https://doi.org/10.1103/PhysRevB.41.1227
J. P. Perdew, K. Burke, and M. Ernzerhof. Phys. Rev. Lett., 1996, 77, 3865. https://doi.org/10.1103/physrevlett.77.3865
H. J. Monkhorst and J. D. Pack. Phys. Rev. B, 1976, 13, 5188-5192. https://doi.org/10.1103/PhysRevB.13.5188
R. Dovesi, A. Erba, R. Orlando, C. M. Zicovich-Wilson, B. Civalleri, L. Maschio, M. Rérat, S. Casassa, J. Baima, S. Salustro, and B. Kirtman. Wiley Interdiscip. Rev.: Comput. Mol. Sci., 2018, 8, e1360. https://doi.org/10.1002/wcms.1360
Thermo_pw. https://dalcorso.github.io/thermo_pw/ (accessed Apr 03, 2022).
C. Gatti and S. Casassa. TOPOND14 Users Manual. Milano, Italy: CNR-ISTM Milano, 2014.
P. Ravindran, L. Fast, P. A. Korzhavyi, B. Johansson, J. Wills, and O. Eriksson. J. Appl. Phys., 1998, 84, 4891. https://doi.org/10.1063/1.368733
R. Hill. Proc. Phys. Soc., Sect. A, 1952, 65, 349. https://doi.org/10.1088/0370-1298/65/5/307
S. F. Pugh. Philos. Mag., 1954, 45, 823-843. https://doi.org/10.1080/14786440808520496
S. Masys and V. Jonauskas. Comput. Mater. Sci., 2015, 108, 153-159. https://doi.org/10.1016/j.commatsci.2015.06.034
R. F. W. Bader. Atoms in Molecules: A Quantum Theory. New Nork: Oxford University Press, 1990, 357-386.
D. Cremer and E. Kraka. Angew. Chem., Int. Ed., 1984, 23, 627/628. https://doi.org/10.1002/anie.198406271
C. Gatti. Z. Kristallogr., 2005, 220, 399-457. https://doi.org/10.1524/zkri.220.5.399.65073
E. Espinosa, I. Alkorta, J. Elguero, and E. Molins. J. Chem. Phys., 2002, 117, 5529. https://doi.org/10.1063/1.1501133
S. J. Grabowski. Chem. Rev., 2011, 111, 2597-2625. https://doi.org/10.1021/cr800346f
D. V. Korabelnikov and Yu. N. Zhuravlev. RSC Adv., 2019, 9, 12020-12033. https://doi.org/10.1039/C9RA01403A
E. Espinosa, E. Molins, and C. Lecomte. Chem. Phys. Lett., 1998, 285, 170-173. https://doi.org/10.1016/S0009-2614(98)00036-0
Funding
The study was supported by Russian Science Foundation and Kemerovo region-Kuzbass grant No. 22-22-20026, https://rscf.ru/project/22-22-20026/ (https://rscf.ru/en/project/22-22-20026/).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
The authors declare that they have no conflicts of interests.
Additional information
Russian Text © The Author(s), 2022, published in Zhurnal Strukturnoi Khimii, 2022, Vol. 63, No. 10, 100125.https://doi.org/10.26902/JSC_id100125
Rights and permissions
About this article
Cite this article
Fedorov, I.A., Korabelnikov, D.V. AB INITIO STUDY OF THE COMPRESSIBILITY AND ELECTRONIC PROPERTIES OF CRYSTALLINE PURINE. J Struct Chem 63, 1670–1677 (2022). https://doi.org/10.1134/S0022476622100134
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0022476622100134