Skip to main content
Log in

Fine genetic mapping of the nuclear gene, Rf-1, that restores the BT-type cytoplasmic male sterility in rice (Oryza sativa L.) by PCR-based markers

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

The Rf-1 gene restores the pollenfertility disturbed by the BT-type malesterile cytoplasm. Nine restrictionfragment length polymorphism (RFLP) markerson chromosome 10, where the Rf-1 geneis located, were converted to PCR-basedmarkers. Genetic analysis was conductedusing the nine markers and a segregatingpopulation consisting of 1042 plants. As aresult, the Rf-1 gene was mappedbetween S12564 Tsp509I and C1361 MwoI. The genetic distance of the twomarker loci was estimated as 0.3 cM. Basedon the map information of the Rf-1gene, it will be possible to introduce alimited chromosomal segment of the Rf-1 region derived from a donor intojaponica rice varieties efficiently andeffectively by marker-assisted selection(MAS). Also, examination of seed purity ofhybrid rice varieties and their parentallines will be facilitated. Furthermore,judging from the genetic distance from theRf-1 locus to S12564 Tsp509Iand C1361 MwoI loci, it seems thatthe Rf-1 gene could be isolated bychromosomal walking from either or both ofthe two marker loci.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Akagi, H., M. Sakamoto, C. Shinjyo, H. Shimada & T. Fujimura, 1994. A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility. Curr Genet 25: 52-58.

    Google Scholar 

  • Akagi, H., Y. Yokozeki, A. Inagaki, A. Nakamura & T. Fujimura, 1996. A codominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting. Genome 39: 1205-1209.

    Google Scholar 

  • Cui, X., R.P. Wise & P.S. Schnable, 1996. The rf2 nuclear restorer gene of male-sterile T-cytoplasm maize. Science 272: 1334-1336.

    Google Scholar 

  • Dewey, R.E., C.S. Levings III & D.H. Timothy, 1986. Novel recombinations in the maize mitochondrial genome produce a unique transcriptional unit in the Texas male-sterile cytoplasm. Cell 44: 439-449.

    Google Scholar 

  • Dewey, R.E., D.H. Timothy & C.S. Levings III, 1987. A mitochondrial protein associated with cytoplasmic male sterility in the T cytoplasm of maize. Proc Natl Acad Sci USA 84: 5374-5378.

    Google Scholar 

  • Edwards, K., C. Johnstone & C. Thompson, 1991. A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res 19: 1349.

    Google Scholar 

  • Fukuta, Y., M. Yano & K. Fukui, 1992. Linkage analysis of the restorer gene (Rf-1) in rice using restriction fragment length polymorphism markers. Breed Sci 42 (Suppl.1): 164-165.

    Google Scholar 

  • Harushima, Y., M. Yano, A. Shomura, M. Sato, T. Shimano, Y. Kuboki, T. Yamamoto, S.Y. Lin, B.A. Antonio, A. Parco, H. Kajiya, N. Huang, K. Yamamoto, Y. Nagamura, N. Kurata, G.S. Khush & T. Sasaki, 1998. A high-density rice genetic linkage map with 2275 markers using a single F2 population. Genetics 148: 479-494.

    Google Scholar 

  • Horn, R., R.H. Kohler & K. Zetsche, 1991. A mitochondrial 16 kDa protein is associated with cytoplasmic male sterility in sunflower. Plant Mol Biol 17: 29-36.

    Google Scholar 

  • Ichikawa, N., N. Kishimoto, A. Inagaki, A. Nakamura, Y. Koshino, Y. Yokozeki, M. Oka, S. Samoto, H. Akagi, K. Higo, C. Shinjyo, T. Fujimura & H. Shimada, 1997. A rapid PCR-aided selection of a rice line containing the Rf-1 gene which is involved in restoration of the cytoplasmic male sterility. Mol Breed 3: 195-202.

    Google Scholar 

  • Ikeda, N., T. Yamada, O. Kamijima & T. Ishii, 2000. Rice wild QTL analysis. 6. Ultra-simple DNA extraction method for marker-assisted selection using rice microsaatellite markers. Breed Res 2 (Suppl.2): 134.

    Google Scholar 

  • Iwabuchi, M., J. Kyozuka & K. Shimamoto, 1993. Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice. EMBO J 12: 1437-1446.

    Google Scholar 

  • Kadowaki, K., T. Suzuki & S. Kazama, 1990. A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice. Mol Gen Genet 224: 10-16.

    Google Scholar 

  • Kaiser, K. & N. Murrey, 1985. Construction of representative genomic DNA libraries. In: D.M. Glover (Ed.), DNA Cloning Volume I, pp. 1-47. IRL Press Ltd., Oxford.

    Google Scholar 

  • Kennell, J.C. & D.R. Pring, 1989. Initiation and processing of atp6, T-urf13 and ORF221 transcripts from mitochondria of T cytoplasm maize. Mol Gen Genet 216: 16-24.

    Google Scholar 

  • McCouch, S.R. & S.D. Tanksley, 1991. Development and use of restriction fragment length polymorphism in rice breeding and genetics. In: G.S. Kush & G.H. Toenniessen (Eds.), Rice Biotechnology, pp. 109-133. CAB Int., Wallingford.

    Google Scholar 

  • Michaels, S.D. & R.M. Amasino, 1998. A robust method for detecting single-nucleotide changes as polymorphic markers by PCR. Plant J 14: 381-385.

    Google Scholar 

  • Murray, M.G. & W.F. Thompson, 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.

    Google Scholar 

  • Nanda, J.S. & S.S. Virmani, 2000. Hybrid rice. In: J.S. Nanda (Ed.), Rice Breeding and Genetics: Research Priorities and Challenges, pp. 23-52. Science Publishers Inc., Enfield.

    Google Scholar 

  • Neff, M.M., J.D. Neff, J. Chory & A.E. Pepper, 1998. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J 14: 387-392.

    Google Scholar 

  • Nivison, H.T. & M.R. Hanson, 1989. Identification of a mitochondrial protein associated with cytoplasmic male sterility in petunia. Plant Cell 1: 1121-1130.

    Google Scholar 

  • Sambrook, J. & D.W. Russell, 2001. Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, New York.

    Google Scholar 

  • Schnable, P.S. & R.P. Wise, 1998. The molecular basis of cytoplasmic male sterility and fertility restoration. Trends Plant Sci 3: 175-180.

    Google Scholar 

  • Shinjyo, C., 1975. Genetical studies of cytoplasmic male sterility and fertility restoration in rice, Oryza sativa L. Sci Bull Coll Agr Univ Ryukyus 22: 1-57.

    Google Scholar 

  • Shinjyo, C., 1984. Cytoplasmic male sterility and fertility restoration in rice having Genome A. In: S. Tsunoda & N. Takahashi (Eds.), Biology of Rice, pp. 321-338. Elsevier Press, Amsterdam.

    Google Scholar 

  • Steiner, J.J., C.J. Poklemba, R.G. Fjellstrom & L.F. Elliott, 1995. A rapid one-tube genomic DNA extraction process for PCR and RAPD analyses. Nucl Acids Res 23: 2569-2570.

    Google Scholar 

  • Young, E.G. & M.R. Hanson, 1987. A fused mitochondrial gene associated with cytoplasmic male sterility is developmentally regulated. Cell 50: 41-49.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Komori, T., Yamamoto, T., Takemori, N. et al. Fine genetic mapping of the nuclear gene, Rf-1, that restores the BT-type cytoplasmic male sterility in rice (Oryza sativa L.) by PCR-based markers. Euphytica 129, 241–247 (2003). https://doi.org/10.1023/A:1021915611210

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1021915611210

Navigation