Abstract
Biotechnological tools such as clonal propagation, haploid production, protoplast fusion, marker-assisted selection, and quantitative trait loci mapping are the age-old approaches in commercial forestry. Biotechnology has shown immense guarantee for the subsequent generation of plant breeders to alleviate the rising demand for food, fiber, and wood. The probable social and environmental impacts of the release of transgenic trees become a progressively more debatable issue and call more considerations. The present review is an attempt to summarize how advances in molecular biology i.e., comparative genomics and genome assembly approaches identify numerous polymorphic molecular markers like microsatellite, simple sequence repeats, single-nucleotide polymorphism (SNP), random amplified polymorphic DNA etc. and revolutionize the science of forest tree biotechnology during the last decade. The advent of next-generation sequencing technology identified many microsatellite loci in forest trees. Microsatellite markers play an important role in population genetics, conservation ecology, and phylogenetic analysis. SNP markers provide novel opportunities for the discovery of regulatory elements in the genome and eventually accelerate forest tree breeding.
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References
Tzfira T, Zuker A, Altman A (1998) Forest tree biotechnology: genetic transformation and its application to future forests. Trends Biotechnol 16:439–446
Plomion C, Bastien C, Bogeat-Triboulot MB, Bouffier L, Dejardin A, Duplessis S et al (2016) Forest tree genomics: 10 achievements from the past 10 years and future prospects. Ann Forest Sci 73(1):77–103
Sedjo RA (2001) From foraging to cropping: the transition to plantation forestry, and implications for wood supply and demand. Unasylva 52:24–27
Bajpai P (2018) Biotechnology in forestry. In: Bajpai P (eds) Biotechnology for pulp and paper processing. Springer, Singapore, pp 39–56
Berlyn GP, Beck RC, Rentroe MH (1986) Tissue culture and the propagation and genetic improvement of conifers: problems and possibilities. Tree Physiol 1:227–240
Payn T, Carnus JM, Freer-Smith P, Kimberley M, Kollert W, Liu S et al (2015) Changes in planted forests and future global implications. For Ecol Manag 352:57–67
Mehta U, Rao IVR, Mohan Ram HY (1982) Somatic embryogenesis in bamboo. In: Fujiwara A (ed) Plant tissue and cell culture, proceedings of the 5th international congress Tokyo, Japan, pp 109–110.
Park YS, Barrett JD, Bonga JM (1998) Application of somatic embryogenesis in high-value clonal forestry: deployment, genetic control, and stability of cryopreserved clones. Vitro Cell Dev Biol Plant 34:231–239. https://doi.org/10.1007/BF02822713
Dickmann DI (1991) Role of physiology in forest tree improvement. Silva Fennica 25:248–256
Maruyama TE, Hosoi Y (2019) Progress in somatic embryogenesis of Japanese pines. Front Plant Sci 10:31. https://doi.org/10.3389/fpls.2019.00031
Kumar A, Tiwari KL, Datta D, Singh M (2014) Marker assisted gene pyramiding for enhanced tomato leaf curl virus disease resistance in tomato cultivars. Biol Plant 58(4):792–797
Rai N, Kumar A, Singh PK, Singh M, Datta D, Rai M (2010) Genetic relationship among Hyacinth bean (Lablab purpureus) genotypes cultivars from different races based on quantitative traits and random amplified polymorphic DNA marker. Afr J Biotech 9(2):137–144
Liu JJ, Williams H, Zamany A, Li XR, Gellner S, Sniezko RA (2019) Development and application of marker-assisted selection (MAS) tools for breeding of western white pine (Pinus monticola Douglas ex D. Don) resistance to blister rust (Cronartium ribicola JC Fisch.) in British Columbia. Can J Plant Path. https://doi.org/10.1080/07060661.2019.1638454.
Andolfatto P, Davison D, Erezyilmaz D, Hu TT, Mast J, Sunayama-Morita T et al (2011) Multiplexed shot gun genotyping for rapid and efficient genetic mapping. Genome Res 21:610–617. https://doi.org/10.1101/gr.115402.110
Pfender WF, Saha MC, Johnson EA, Slabaugh MB (2011) Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor Appl Genet 122:1467–1480. https://doi.org/10.1007/s00122-011-1546-3
Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES et al (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6(5):e19379. https://doi.org/10.1371/journal.pone.0019379
Baltunis BS, Gapare WJ, Wu HX (2009) Genetic parameters and genotype by environment interaction in radiata pine for growth and wood quality traits in Australia. Silvae Genetica 59(1–6):113–124
White T, Davis J, Gezan S, Hulcr J, Jokela E, Kirst M, Smith J (2014) Breeding for value in a changing world: past achievements and future prospects. New For 45(3):301–309
Surendran C, Parthiban KT, Vanangamudi K, Balaji S (2000) Vegetative propagation of trees, principles and practices. TNAU Press, Coimbatore, pp 1–154
Resende MDV, Resende MFR, Sansaloni CP, Petroli CD, Missiaggia AA, Aguiar AM et al (2012) Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees. New Phytol 194:116–128
Naidoo S, Slippers B, Plett JM, Coles D, Oates CN (2019) The road to resistance in forest trees. Front Plant Sci 10:273. https://doi.org/10.3389/fpls.2019.00273
Ray S, Satya P (2014) Next generation sequencing technologies for next generation plant breeding. Fron Plant Sci 5:367. https://doi.org/10.3389/fpls.2014.00367
Neale DB, Kremer A (2011) Forest tree genomics: growing resources and applications. Nat Rev Genet 12(2):111–122. https://doi.org/10.1038/nrg2931
Tuskan GA, Difazio S, Jansson S, Bohlman J, Grigoriev I, Hellsten U et al (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596–1604. https://doi.org/10.1126/science.1128691
Myburg A, Grattapaglia D, Tuskan G, Hellsten U, Hayes RD, Grimwood J et al (2014) The genome of Eucalyptus grandis. Nature 501:356–362. https://doi.org/10.1038/nature13308
Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser V et al (2016) Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Mol Ecol Resour 16:254–265. https://doi.org/10.1111/1755-0998.12425
Perera D, Magbanua ZV, Thummasuwan S, Mukherjee D, Arick M, Chouvarine P et al (2018) Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis. Gene 663:165–177. https://doi.org/10.1016/j.gene.2018.04.024
Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW et al (2014) Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Genome Biol 15:R59. https://doi.org/10.1186/gb-2014-15-3-r59
Pavy N, Lamothe M, Pelgas B, Gagnon F, Birol I, Bohlmann J et al (2017) A high-resolution reference genetic map positioning 8.8 K genes for the conifer white spruce: structural genomics implications and correspondence with physical distance. Plant J 90(1):189–203
Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Casola C (2017) The Douglas-fir genome sequence reveals specialization of the photosynthetic apparatus in Pinaceae. G3 Genes Genom Genet 7(9):3157–3167
Fenning TM, Gershenzon J (2002) Where will the wood come from? Plantation forests and the role of biotechnology. Trends Biotechnol 20(7):291–296
Chang S, Mahon EL, MacKay HA, Rottmann WH, Strauss SH, Pijut PM, Jones TJ (2018) Genetic engineering of trees: progress and new horizons. Vitro Cell Dev Biol-Plant 54(4):341–376
Porth I, El-Kassaby YA (2014) Current status of the development of genetically modified (GM) forest trees world-wide: a comparison with the development of other GM plants in agriculture. CAB Rev 9(8):1–12. https://doi.org/10.1079/PAVSNNR20149008
Wang JP, Matthews ML, Williams CM, Shi R, Yang C, Tunlaya-Anukit S et al (2018) Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nat Commun 9:1579. https://doi.org/10.1038/s41467-018-03863-z
Myburg AA, Hussey SG, Wang JP, Street NR, Mizrachi E (2019) Systems and synthetic biology of forest trees: a bioengineering paradigm for woody biomass feedstocks. Front Plant Sci 10:775. https://doi.org/10.3389/fpls.2019.00775
Polle A, Chen S, Eckert C, Harfouche A (2018) Engineering drought resistance in forest trees. Front Plant Sci 9:1875. https://doi.org/10.3389/fpls.2018.01875
Canovas FM (2018) Nitrogen metabolism and biomass production in forest trees. Front Plant Sci 9:1449. https://doi.org/10.3389/fpls.2018.01449
Douglas CJ (2017) Populus as a model tree. In: Groover AT, Cronk QCB (eds) Comparative and evolutionary genomics of angiosperm trees. Plant genetics and genomics: crops and models. Springer, New York, pp 61–84. https://doi.org/10.1007/7397_2017_3
Li L, Zhou Y, Cheng X, Sun J, Marita JM, Ralph J, Chiang VL (2003) Combinatorial modification of multiple lignin traits in trees through multigene co transformation. Proc Natl Acad Sci USA 100(8):4939–4944
Hinchee M, Zhang C, Chang S, Cunningham M, Hammond W, Nehra N (2011) Biotech eucalyptus can sustainably address society’s need for wood: the example of freeze tolerant Eucalyptus in the southeastern US. BMC Proc BioMed Cent 5(7):124. https://doi.org/10.1186/1753-6561-5-S7-I24
Gao W, Bai S, Li Q, Gao C, Liu G, Li G, Tan F (2013) Over expression of TaLEA gene from Tamarix androssowii improves salt and drought tolerance in transgenic poplar (Populus simonii × P. nigra). PLoS ONE 8(6):e67462. https://doi.org/10.1371/journal.pone
Coleman HD, Yan J, Mansfield SD (2009) Sucrose synthase affects carbon partitioning to increase cellulose production and altered cell wall ultrastructure. Proc Natl Acad Sci USA 106(31):13118–13123
Behnke K, Grote R, Brüggemann N, Zimmer I, Zhou G, Elobeid M, Schnitzler JP (2012) Isoprene emission-free poplars—a chance to reduce the impact from poplar plantations on the atmosphere. New Phytol 194(1):70–82
Kim HJ, Lee SH (2017) Estimating carbon storage and CO2 absorption by developing allometric equations for Quercus acuta in South Korea. For Sci Technol 13(2):55–60
Kazana V, Tsourgiannis L, Iakovoglou V, Stamatiou C, Alexandrov A, Araujo S et al (2015) Public attitudes towards the use of transgenic forest trees: a cross-country pilot survey. iFor Biogeosci For 9(2):344–353
Yu H, Chen X, Hong YY, Wang Y, Xu P, Ke SD, Liu HY, Zhu JK, Oliver DJ, Xiang CB (2008) Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density. Plant Cell 20:1134–1151
Dash M, Yordanov YS, Georgieva T, Tschaplinski TJ, Yordanova E, Busov V (2017) Poplar PtabZIP1-like enhances lateral root formation and biomass growth under drought stress. Plant J 89(4):692–705
Yu D, Wildhagen H, Tylewicz S, Miskolczi PC, Bhalerao RP, Polle A (2019) Abscisic acid signalling mediates biomass trade-off and allocation in poplar. New Phytol 223:1192–1203
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Significance Statement The present review is an attempt to summarize how advances based on genomic approaches identified numerous polymorphic molecular markers and revolutionized the science of forest tree biotechnology in the recent past.
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Panda, A.K., Mishra, R., Bisht, S.S. et al. Technological Advances in Commercial Forestry. Proc. Natl. Acad. Sci., India, Sect. B Biol. Sci. 90, 753–760 (2020). https://doi.org/10.1007/s40011-019-01146-1
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DOI: https://doi.org/10.1007/s40011-019-01146-1