ATOM system
The ATOM system used for monitoring bats and migratory birds in this study included a combination of deployable thermographic, acoustic, and ultrasound sensors that autonomously record data and transmit them to a central site for storage and analysis. System software includes algorithms and protocols for managing and analyzing large volumes of data recorded by the sensors. The system is described fully by Normandeau Associates (2014) and, in its final deployment within this study, included the following: a Verizon™ cellular modem and a Hughes® satellite modem connected to different computers; two FLIR Tau 320 (Forward Looking Infrared) cameras and an integrated custom-built wiper system; two Bolide Technology Group BT-MP8087 acoustic microphones; one AR-125 ultrasonic microphone (Binary Acoustic Technology, Tucson); an integrated meteorological system recording visibility, temperature, wind speed and direction, and humidity (Columbia Weather Systems MicroServer); and a power monitoring system (Power Control Hub) with built-in satellite communication (see Fig. 1). The solar system consisted of solar collection panels; deep-cycle, sealed lead acid marine batteries; and charge controllers. The audio computer had bidirectional communication between the nodes and the host module using a LAN-based Ethernet connection. All sensor data were received by the control computer and transferred to the storage system. The five separate computers that comprised the central core of the ATOM system were housed in two, custom-fabricated weatherproof containers: one for the storage computer, including 32 storage drives (30 × 2 TB, 2 × 3 TB), and one for the other four computers and the two thermographic cameras (see Fig. 1).
The system’s two thermal cameras look up from the main control computer box through thermally transparent germanium ‘windows’ covering the holes on each end of a metal bar. The windows on the upper surface of the bar were covered by movable metal covers with rubber O-rings that cleaned the windows as needed by applying fluid to the upper surface of the windows and then moving the O-rings across the surface, much like a windscreen wiper.
The power monitoring system remotely monitored the overall health and functionality of the system by reporting the following: voltage draw of each component; operating state; input and output voltages; input and output currents of the solar charge controller; input voltages to the power control board; the temperature of numerous system components including the control computer, solar charge controller, power control board, storage computer box, and hard drives; and the internal relative humidity of the control and storage boxes. It also reported the number of system restarts for various system computers, the amount of hard drive space available and used on the storage and control computers, and the network bandwidth used. Internal logging constantly monitored system health and assisted in identifying timing and causes of any malfunction and indications of system weakness, allowing targeted maintenance.
ATOM system deployment
The overall functioning of the system and its ability to record target species was tested during an installation beneath the terrestrial wind turbine at University of Delaware-Lewes (UD-Lewes; 38°46′58.53″N, 75°9′53.41″W) from 18 July 2011 to 9 August 2011 (Table 1; Fig. 2). Eight bat species are resident in Delaware (Supplementary material, Table S1), and all were expected to be active at UD-Lewes during the time of our testing (DNREC 2012). After this short terrestrial test, the system was deployed on Frying Pan Shoals Light Tower (FPSLT) for 15 months (December 2011 to March 2013), the maximum amount of time that funding allowed. FPSLT is an 80-ft platform constructed in 1966 that is located 29 miles offshore southeast of Southport, North Carolina (33°29′N, 77°35′W; Fig. 2). This location is far enough from shore that many true pelagic taxa can be found including storm-petrels, shearwaters, jaegers, and albatrosses. Other taxa, such as gulls and terns that typically inhabit both near shore and pelagic environments could also be expected. During spring and fall migration, non-pelagic taxa, such as neotropical passerines, were also anticipated to pass through (Poole 2005), although much remains unknown about migration strategies of non-pelagic species so far offshore because of the difficulties associated with collecting such data. Offshore bat activity is not well documented, and patterns of activity and species abundances offshore remain unclear. Species that are sometimes reported offshore in this region, and thus potentially detectable at FPSLT, are the migratory eastern red bat (Lasiurus borealis), hoary bat (L. cinereus), and silver-haired bat (Lasionycteris noctivagans), but a few others have also been documented offshore (Pelletier et al. 2013; Peterson et al. 2014; Table S1).
Table 1 Recording effort (hours) summarized by month, location, and time of day for each ATOM system sensor component at two test deployment locations in the eastern USA. Delaware is an onshore location; Frying Pan is 29 miles offshore (see Fig. 2 for their geographical location)
Data transfer, storage, and analysis occurred at Normandeau’s Gainesville office in Florida. Data were uploaded to the ATOM-dedicated Linux server from the hard drives in the ATOM data storage system. Ultrasound data files were collected and stored as 205 kHz, 16 bit PCM ‘wav’ files, and thermographic data in a proprietary PSIR format. Acoustic audio files were originally recorded as DAT files, subsequently converted to CAF files for storage, and eventually analyzed as 16 bit PCM ‘wav’ files. Near real-time data downloading has since been developed for use when cellular connectivity is available, but during the deployment reported here, the hard drives were collected approximately every 3 months depending on weather-related accessibility. Drives containing copies of acoustic data were forwarded to CLO for additional analysis.
Thermographic analysis
Thermographic data collected from UD-Lewes by the ATOM system underwent manual review restricted to those data within timestamps identified during ultrasound data analysis as containing targets. Automated and manual quality control reviews were completed on all thermographic video data collected from FPSLT between December 2011 and October 2012. Data were processed through an automated target detection program named SwisTrack (see Normandeau Associates 2014), which produced video segments (tracks) of potential targets. This filter was adjusted to eliminate tracking of all turbine blades at the terrestrial deployment and most clouds and insects at both deployments. Distance, velocity, and bearing of objects were estimated by triangulating the coordinates of the objects from each of two cameras. Distance was corrected for height above sea level by adding the distance of the platform and camera from the ocean. This was a correction of 32 m; birds could not be recorded under this altitude and thus all observations occurred within the range of altitudes defined as the rotor swept zone of marine turbines (20–200 m). Velocity and bearing were calculated by measuring the change in distance over time among frames. In instances where the object was recorded across multiple frames, the median distance of the object from the camera was reported. The accuracy and error of the calculations were characterized in field tests using targets of known size, distance, direction, and speed. Flight trajectories of foraging bats deviate rapidly and unpredictably from a straight line, whereas the flight paths of birds tend to be straighter (Kunz et al. 2007). It has also been suggested that some bats may use relatively straight flight trajectories while migrating, and other bats may have overall tendencies toward straighter flight trajectories (Ghose et al. 2006; Kunz et al. 2007); therefore, straighter flight trajectories were classified as bird/bat and not used in bird or bat analyses if no other evidence was available for distinguishing them. In some cases with low flying animals, the shape of the animal was distinctive enough to manually identify whether it was a bird or bat (see Fig. 3). Size of the object, assessed by distance from camera, was also used as a distinguishing feature. Raw video segments were manually reviewed to quality control the automated detection performance.
Ultrasound acoustic analysis
The full-spectrum ultrasound acoustic data were analyzed using automated and manual processes developed for use with the ReBAT® (Remote Bat Acoustic Technology) system. ReBAT was developed for bat acoustic monitoring at wind energy facilities; specifically, it allows long-term acoustic monitoring from meteorological towers and/or where the blade attaches to the turbine (the nacelle) so that bats can be detected within the rotor swept zone, where fatalities occur. The ultrasound acoustic systems were fully online and constantly monitored (via cell or satellite networks) for functionality, and when deployed within cellular range at UD-Lewes, recorded bat data were sent to offsite servers for storage and analysis. When deployed at FPSLT, data were stored onto hard drives and collected with all other data. As ultrasonic data were recorded, they were automatically (automated target detection) filtered by SCAN’R© filtering software (Binary Acoustic Technology, Tucson, AZ) to remove noise files. This program recognizes a potential bat pass event and produces a 1.7-s duration ‘wav’ file; any time at least two consecutive potential bat echolocation calls are recorded. SCAN’R uses the ultrasound spectrographic patterns of bat calls to recognize potential bat calls (Binary Acoustic Technology 2010). Once filtered by the SCAN’R software, remaining files were run through an additional ReBAT.com filter to remove noise files not captured by SCAN’R. Additionally, a subset of the files removed by the ReBAT.com filter was manually reviewed to ensure that no bat calls were being discarded as noise. The remaining bat calls were manually identified to species or species group using expert knowledge as well as SonoBat™ 3 (Joe Szewczak; Arcata, CA), an acoustic identification software program that was periodically used to obtain a second opinion regarding species ID for calls that had call parameters potentially assigned to more than one species. Manual bat call identification involved viewing spectrograms and assessing certain parameters of the echolocation calls; specifically, minimum and maximum frequency, call duration, and inter-pulse interval. These parameters were then compared to known values for bat species found within the monitoring area (Fenton and Bell 1981). Each 1.7-s file usually only contained one pass (sequence of ≥2 bat calls). Occasionally, a file contained more than one bat pass belonging to the same or different species. On the rare occasion that this occurred, the file was still counted as one pass.
Audio acoustic analysis
Analyses of migrant songbirds from the FPSLT deployment focused on nocturnal flight calls. Nocturnal flight calls are species-specific vocalizations of up to several syllables that generally are in the 1–11 kHz frequency band and 50–300 ms in duration. These calls are the primary vocalizations given by many species of birds during long, sustained flights characteristic of nocturnal migration (Evans and O’Brien 2002). Raven Pro Sound Analysis Software v.1.5 (Bioacoustics Research Program, Cornell Lab of Ornithology 2013) was used to process and analyze the sound recordings using two different Band Limited Energy Detectors to detect possible nocturnal flight calls in two discrete frequency ranges: a high range encompassing 6000–11 000 Hz to capture sparrows and warbler calls and a lower range between 2250 and 3750 Hz to capture calls of thrushes, shorebirds, and other bird species. To reduce the potentially high number of false detections, a Random Forest model (Liaw and Wiener 2002) was used to rank the likelihood that a given detection was an actual flight call. For this analysis, acoustic analysts manually reviewed the tens of thousands of ranked candidate call detections and confirmed each as true calls or noise. All true calls were annotated to the most specific taxonomic level possible by experts in bird call identification.
Analysis of relationship between environmental factors and bird and bat activity
Detection ability was determined by reviewing 10 % of the images manually for targets and comparing this number with those detected from automated analysis. To permit comparisons across species, times of day, and seasons, automated thermographic data were corrected for both detection ability and survey time. Variation in animal distribution and density across time of day and across season can impact turbine avoidance behavior and collision risk. Consequently, the ability to predict activity on a daily and seasonal level can help provide suitable collision mitigation strategies.
Detection success values were calculated on a monthly basis. Detections were corrected by survey time by assuming the same number of targets occurred during times when the thermographic camera was not running as when it was running. Corrections for survey time were performed across each analysis period: day, night, and all hours. Corrected abundance (A
c) was calculated by summing the number of birds across each month (A
0), dividing this by the automated detection correction for the given month (S
s), and dividing the outcome of this division by the proportion of the month that was surveyed (O
t). Corrected abundance was thus calculated according to the following:
$$ A_{c} = \frac{{\frac{{A_{o} }}{{S_{s} }}}}{{O_{t} }}. $$
Like detection success corrections, abundance corrections were performed on a monthly basis so that the timeframe was wide enough for a large enough sample size. In addition to evaluating abundance data from automated analyses, comparisons of flight altitude, flight bearing, and flight velocity were also examined by season. Results are illustrated for all birds combined, and separate results are also presented differentiating behavioral patterns for passerines and non-passerines. These behavioral patterns include flight altitude, bearing, and velocity, relevant due to differences in life history characteristics between passerines and other species. These metrics were chosen because they directly influence collision risk and can be used to inform smart shutdown of wind turbines. Birds <20 cm in size were classified as passerines and birds > 30 cm as non-passerines. Birds between 20 and 30 cm were not included in this categorization because of overlap in the sizes of some passerines with some Laridae species. Relationships associated with potential risk of collision, between weather variables (including wind speed and wind direction) and abundance, flight altitude, and flight direction were evaluated by examining scatterplots of the data and drawing qualitative conclusions. Statistical significance was evaluated by comparing the 95 % confidence intervals among different groups. Groups whose 95 % confidence intervals did not overlap were considered significantly different from each other (α = 0.05).