Differential stem cell aging kinetics in Hutchinson-Gilford progeria syndrome and Werner syndrome
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Hutchinson-Gilford progeria syndrome (HGPS) and Werner syndrome (WS) are two of the best characterized human progeroid syndromes. HGPS is caused by a point mutation in lamin A (LMNA) gene, resulting in the production of a truncated protein product—progerin. WS is caused by mutations in WRN gene, encoding a loss-of-function RecQ DNA helicase. Here, by gene editing we created isogenic human embryonic stem cells (ESCs) with heterozygous (G608G/+) or homozygous (G608G/G608G) LMNA mutation and biallelic WRN knockout, for modeling HGPS and WS pathogenesis, respectively. While ESCs and endothelial cells (ECs) did not present any features of premature senescence, HGPS- and WS-mesenchymal stem cells (MSCs) showed aging-associated phenotypes with different kinetics. WS-MSCs had early-onset mild premature aging phenotypes while HGPS-MSCs exhibited late-onset acute premature aging characterisitcs. Taken together, our study compares and contrasts the distinct pathologies underpinning the two premature aging disorders, and provides reliable stem-cell based models to identify new therapeutic strategies for pathological and physiological aging.
KeywordsWRN lamin HGPS Werner syndrome stem cell aging
Progeroid syndromes are heritable human disorders characterized by progeroid features that recapitulate typical features of normal aging. Among all the progeroid syndromes, Hutchinson-Gilford progeria syndrome (HGPS) and Werner syndrome (WS) are best characterized (Kudlow et al., 2007). HGPS is a sporadic autosomal dominant syndrome, and most HGPS patients were heterozygous for LMNA mutation (p.G608G/+). LMNA encodes A-type lamins that belongs to the family of nuclear lamina proteins, and a point mutation (p.G608G) in LMNA creates an aberrant splicing site in exon 11, resulting in the production of a truncated protein, progerin (Chojnowski et al., 2015; DeBoy et al., 2017; Luo et al., 2014). Another commonly seen progeroid syndrome is WS, caused by mutations in WRN gene that encodes a RecQ DNA helicase (Yu et al., 1996) important to DNA replication and DNA damage repair. Loss-of-function WRN leads to genomic instability, heterochromatin alterations, and cell growth defects, which contribute to WS pathogenesis (Li et al., 2016; Murfuni et al., 2012; Ren et al., 2017a; Ren et al., 2011; Seki et al., 2008; Shamanna et al., 2017; Zhang et al., 2015).
Both HGPS and WS patients present a wide range of aging-associated syndromes such as alopecia, lipodystrophy, osteoporosis and atherosclerosis. Studies on fibroblasts from HGPS and WS patients reveal features of accelerated cellular senescence and decreased proliferation potential (Brunauer and Kennedy, 2015; Chen et al., 2017; Cheung et al., 2014; Cheung et al., 2015; Kudlow et al., 2007; Liu et al., 2011a). Despite these common features, differences exist between HGPS and WS in the scope, intensity and duration of symptoms. For example, most patients with HGPS show symptoms resembling aspects of aging at a very early age and die at a median age from 11 to 13. By comparison, WS patients usually develop normally in the childhood and can live up to their fifties (Cox and Faragher, 2007; Ding and Shen, 2008; Hennekam, 2006; Kudlow et al., 2007; Mazereeuw-Hautier et al., 2007; Muftuoglu et al., 2008; Oshima et al., 2017).
In recent years, technologies based on stem cells and gene editing have been widely used to model various human diseases (Atchison et al., 2017; Duan et al., 2015; Fu et al., 2016; Liu et al., 2011a; Liu et al., 2012; Liu et al., 2014; Liu et al., 2011b; Lo Cicero and Nissan, 2015; Miller et al., 2013; Pan et al., 2016; Ren et al., 2017b; Wang et al., 2017; Yang et al., 2017; Zhang et al., 2015). Of note, HGPS-specific induced pluripotent stem cells (iPSCs) and WS-specific iPSCs and embryonic stem cells (ESCs) have been separately generated. Based on the findings by us and other groups, although the iPSCs and ESCs do not have any premature aging defects, mesenchymal stem cells (MSCs) and vascular smooth muscle cells (VSMCs) derived from these pluripotent stem cells display premature aging, consistent with the observations in fibroblasts from HGPS and WS patients (Chen et al., 2017; Cheung et al., 2014; Liu et al., 2011a; Miller et al., 2013; Zhang et al., 2011). Both being typical cases of progeroid syndromes, comparative analysis on HGPS and WS is very limited. More information about the similarities and differences in the pathological processes and molecular mechanisms of HGPS and WS remains to be uncovered via comparative studies.
Here, we successfully developed a reliable and isogenic platform for side-by-side investigation of HGPS and WS. Taking advantage of gene editing, we generated human ESCs harboring heterozygous LMNA p.G608G mutation and WRN deficiency, mimicking HGPS and WS, respectively. Notably, a genetically enhanced HGPS-specific ESCs bearing biallelic LMNA p.G608G mutation were also created. We found that HGPS- and WS-MSCs, but not ESCs or ECs, exhibited typical aging-associated characteristics. Interestingly, distinct aging kinetics were detected between HGPS- and WS-MSCs. For the first time, we achieved a contemporaneous comparison between HGPS and WS under the same genetic background to unravel the molecular and cellular differences, opening a window into the understanding of the pathology of human aging and providing a platform for screening for therapeutic strategies against aging-associated disorders.
Generation of LMNA-mutated and WRN-deficient human ESCs
HGPS-MSCs and WS-MSCs exhibit aging-associated phenotypes with different kinetics
Having shown the distinct senescence-associated kinetics in HGPS-MSCs and WS-MSCs, we continued to evaluate other aging-related phenotypes. Increased DNA damage response is an important feature of aging (Brunauer and Kennedy, 2015; Burtner and Kennedy, 2010; Liu et al., 2005; Lopez-Otin et al., 2013; Mostoslavsky et al., 2006; Musich and Zou, 2011; Saha et al., 2014; Wang et al., 2009; Zhang et al., 2015). Here, increase in γ-H2AX and 53BP1 double-positive cells, indicative of increased DNA damage response, was observed only in WS-MSCs at passage 3 (Fig. 6A). At passage 9, both WS-MSCs and HGPS-MSCs exhibited increased DNA damage response, with the most observed in homozygous HGPS-MSCs (Fig. 6A). Increased size and decreased number of nucleoli can also serve as aging biomarkers (Buchwalter and Hetzer, 2017; Tiku et al., 2016). We observed that only WS-MSCs had fewer but larger nucleoli at early passages, and both WS-MSCs and HGPS-MSCs exhibited increased size and decreased numbers of nucleoli at late passages (Fig. 6B).
Taken together, these results suggest that HGPS-MSCs and WS-MSCs exhibit aging-associated phenotypes with different kinetics, and progerin exerts a dose-dependent effect on cellular senescence of HGPS-MSCs.
HGPS-ECs and WS-ECs do not exhibit phenotypes of accelerated senescence
Human progeroid syndromes are characterized by typical features resembling normal aging, and therefore studies on progeroid disorders have provided important clues to understanding the molecular mechanisms underlying premature and normal aging (Burtner and Kennedy, 2010; Cao et al., 2011; Ding and Shen, 2008; Dreesen and Stewart, 2011; Kudlow et al., 2007; Miyamoto et al., 2014; Scaffidi and Misteli, 2006). As two of the best characterized progeroid syndromes, HGPS and WS have attracted a lot of attention during the last decade; related studies have been greatly conducive to our understanding of the pathology of these two disorders (Atchison et al., 2017; Chen et al., 2017; Cheung et al., 2014; De Sandre-Giovannoli et al., 2003; Ding and Shen, 2008; Egesipe et al., 2016; Kubben et al., 2016; Kudlow et al., 2007; Li et al., 2016; Liu et al., 2011a; Liu et al., 2011b; Lo Cicero and Nissan, 2015; Scaffidi and Misteli, 2006; Zhang et al., 2011; Zhang et al., 2015). However, there are no effective treatments so far and more information about the molecular pathology of these two premature aging syndromes are to be unveiled.
In addition, we observed that the homozygous HGPS-MSCs exhibited more severe aging phenotypes with a higher level of progerin than the heterozygous MSCs. Thus, the MSCs with homozygous or heterozygous LMNA mutation generated in our study also provide opportunities to investigate the role of progerin in a dose-dependent manner. Given the propriety of higher homogenicity in MSCs bearing homozygous LMNA mutation (e.g., expression of progerin), these cells may be particularly amenable to mechanistic studies using multi-omics techniques.
Different from HGPS-MSCs, HGPS-ECs did not display any premature senescence phenotypes, consistent with previous observations in HGPS-iPSC-derived ECs (Zhang et al., 2011). Similarly, WS-ECs did not show aging defects, either. These results indicate that the senescence-associated defects caused by LMNA mutation or WRN deficiency are cell-type-specific (Fig. 10). However, further analyses show that these cells were not otherwise normal; HGPS-ECs and WS-ECs were more apoptotic at baseline than WT-ECs. Moreover, WS-ECs, but not HGPS-ECs, exhibited a more pronounced response to inflammatory factor TNF-α, again indicating different molecular pathologies between the two progeroid syndromes.
MSCs and ECs as the outer and inner layers of blood vessels, respectively, play important roles in maintaining vascular homeostasis (Bochenek et al., 2016; Fang et al., 2010; Hansen et al., 2017; Hoshino et al., 2008; Kramann et al., 2016; Pasquinelli et al., 2007; Sturtzel, 2017; Wang et al., 2018). VSMCs, a cellular component of tunica media, have been proved defective in HGPS patients (Atchison et al., 2017; Chen et al., 2017; Compagnucci and Bertini, 2017; Gonzalo and Kreienkamp, 2015; Harhouri et al., 2017; Kinoshita et al., 2017; Liu et al., 2011a; Olive et al., 2010; Ragnauth et al., 2010; Vidak and Foisner, 2016; Zhang et al., 2011). Based on our data, it is reasonable to postulate that the exhaustion of MSC components in tunica adventitia may also be a common cause of accelerated aging defects in HGPS and WS patients. In addition, increased apoptosis of WS-ECs under inflammatory condition (e.g., TNF-α) may contribute to the vascular pathology in WS.
Therefore, we have generated in vitro models to compare and contrast the pathogenesis of HGPS and WS for the first time, providing high-throughput platforms to efficiently screen for effective treatments for both progeria syndromes and normal aging. In the future, it would be interesting to employ multi-omics technologies, including genomics, epigenomics, transcriptomics, proteomics and metabonomics, to unravel the molecular patterns of HGPS and WS under the same human genetic background, shedding light on the complex mechanisms underlying premature and normal aging and providing new evidence for the prevention and treatment of age-associated disorders.
Materials and Methods
WT-ESCs (Human H9 ESCs, WiCell Research) and three genetically edited ESCs were maintained on mitomycin C-inactivated mouse embryonic fibroblast (MEF) feeder in human ESC culture medium: 80% DMEM/F12 (Gibco), 20% Knockout Serum Replacement (Gibco), 0.1 mmol/L non-essential amino acids (NEAA, Gibco), 2 mmol/L GlutaMAX (Gibco), 55 μmol/L β-mercaptoethanol (Invitrogen), and 10 ng/mL FGF2 (Joint Protein Central); ESCs were also cultured on Matrigel (BD Biosciences) with mTeSR medium (STEMCELL Techonologies). All MSCs were cultured in MSC culture medium: 90% α-MEM + Glutmax (Gibco), 10% fetal bovine serum (FBS, Gemcell, Lot A77E01F), 1% penicillin/streptomycin (Gibco) and 1 ng/mL FGF2 (Joint Protein Central). ECs were cultured in EGM2 medium (Lonza).
Generation of LMNA G608 mutation knock-in ESCs
Helper-dependent adenoviral vector (HDAdV) for LMNA G608G knock-in was generated same as previous report with some modifications (Yang et al., 2017). In brief, exon 11 of LMNA gene was PCR-amplified from LNMA gene correction vector (LMNA-c-HDAdV) (Liu et al., 2011b) and subcloned into the pCR2.1-TOPO vector (Invitrogen). The G608G mutation at exon 11 was introduced using the GeneTailor Site-Directed Mutagenesis System (Invitrogen). The mutated exon 11 was replaced into LMNA-c-HDAdV (Liu et al., 2011b), and generated LMNA G608G knock-in HDAdV plasmid. The generated plasmids was packaged into HDAdV following previous report (Yang et al., 2017). To generate heterozygous LMNA G608G mutation knock-in ESCs, ESCs were infected with LMNA G608G knock-in HDAdV at MOI of 0.3–3 btu/cell and followed previous report (Yang et al., 2017). To generate homozygous LMNA G608G knock-in ESCs, we repeated 2nd round of mutation knock-in using the generated heterozygous LMNA G608G knock-in clones. Successful targeted knock-in events were verified by PCR amplification and DNA sequencing with the following primers: LMNA exon 11-F, 5′-TTGGGCCTGAGTGGTCAGTC-3′; LMNA exon 11-R, 5′-GACCCGCCTGCAGGATTTGG-3′.
Generation of ECs
Briefly, WT-ESCs and three genetically edited ESCs were plated on Matrigel in EC differentiation medium I (EC basal medium with 25 ng/mL BMP4, 3 μmol/L CHIR99021, 3 μmol/L IWP2 and 4 ng/mL FGF2) for 3 days. Differentiation medium II (EC basal medium with 50 ng/mL VEGF, 20 ng/mL FGF2,10 ng/mL IL-6) was used for another 3 days then CD31/CD144 double-positive cells were sorted by FACS.
Generation of MSCs
MSCs were differentiated as previously described (Duan et al., 2015; Fu et al., 2016; Wang et al., 2018; Zhang et al., 2015). Briefly, hESCs were dissociated into EBs and then were plated on Matrigel coated plates in MSC differentiation medium (α-MEM + GlutaMAX (Gibco), 10% FBS (Gemcell, Lot A77E01F), 1% penicillin/streptomycin (Gibco), 10 ng/mL FGF2 (Joint Protein Central) and 5 ng/mL TGFβ (HumanZyme)). About 10 days later, the confluent MSC-like cells were passaged on gelatin coated plate and cultured in MSC culture medium: 90% α-MEM + Glutmax (Gibco), 10% FBS (Gemcell, Lot A77E01F), 1% penicillin/streptomycin (Gibco) and 1 ng/mL FGF2 (Joint Protein Central). Then CD73/CD90/CD105 tripositive cells were sorted by FACS. MSCs were further differentiated towards adipocytes, osteoblasts, and chondrocytes to verify their multiple-lineage differentiation capacities (Pan et al., 2016; Zhang et al., 2015). Oil red O (adiopogenesis), Von Kossa (osteogenesis), and Toluidine blue (chondrogenesis) staining was performed respectively.
Bisulfite sequencing of the OCT4 promoter
Bisulfite treatment of DNA was carried out by using EZ DNA Methylation Kit (Zymo Research) following the manufacturer’s instructions. About 1 μg of genomic DNA was used. A genomic fragment of the OCT4 promoter was amplified using LA Taq Hot Start Version (TAKARA) as previously described. In brief, PCR products were purified by using gel extraction kit (Qiagen), and subsequently cloned into the pMD20 T vector (Transgen). 7 clones from each sample were sequenced with the universal primer M13.
Primers used for PCR: meF-OCT4, 5′-ATTTGTTTTTTGGGTAGTTAAAGGT-3′; meR-OCT4, 5′-CCAACTATCTTCATCTTAATAACATCC-3′.
Teratoma assay was performed as described (Duan et al., 2015; Fu et al., 2016; Zhang et al., 2015). Briefly, 5 × 106 ESCs were administrated subcutaneously into NOD/SCID mice (male, 6–8 weeks). 6–12 weeks after injection, mice were killed and teratomas were analyzed by immunostaining. All animal experiments were conducted with approval of the Institute of Biophysics, Chinese Academy of Science.
Fluorescence-activated cell sorting (FACS)
MSCs or ECs were collected by using TrypLE Express (Gibco) and washed by PBS twice. Cells were incubated with primary antibody diluted with 10% FBS in PBS for 1 h at room temperature and then sorted by using a flow cytometer (BD FACSAria IIIu).
Antibodies used for cell sorting: anti-CD73 (550741), anti-CD90 (555595), anti-CD31 (555445), anti-CD144 (560410) antibodies were from BD Biosciences; anti-CD105 (17–1057) antibody was from eBioscience.
Analysis of cell cycle distribution
For cell cycle analysis, about 1 × 106 cells were processed with the Click-iT EdU Flow Cytometry Assay Kits (Invitrogen) according to the manufacturer’s instructions. In brief, the cells were harvested after 2 h incubation with EdU and stained with Alexa Fluor 647 dye azide and propidium iodide. Cells were examined by fluorescence-activated cell sorting (FACS) using a flow cytometer (BD LSRFortesa).
Clonal expansion assay
The single-cell clonal expansion assay was carried out as described (Duan et al., 2015). Briefly, 2,000 MSCs were seeded in a gelatin-coated 12-well plate. The relative cell density was then determined by Image J after crystal violet staining.
SA-β-Gal staining was performed as described previously (Duan et al., 2015; Zhang et al., 2015). Briefly, cultured cells were washed in PBS and fixed at room temperature for 5 min in 2% formaldehyde and 0.2% glutaraldehyde. Fixed cells were stained with SA-β-Gal staining solution at 37°C overnight, percentage of SA-β-Gal positive cells were then calculated.
Measurement of cell apoptosis and nitric oxide (NO)
For cellular apoptosis analysis, cells were collected freshly and stained with Annexin V-EGFP Apoptosis Detection Kit (Vigorous Biotechnology), and then apoptotic cells were quantified by FACS. For NO detection, cells were treated with DAF-FM (Molecular Probes) for 30 min and quantified by FACS.
Dil-Ac-LDL uptake assay
In brief, ECs were collected after 6 h incubation with Dil-Ac-LDL (Molecular Probes) in EC culture medium. For FACS analysis, cells were collected by using TrypLE Express (Gibco) and measured by a flow cytometer (BD LSRFortesa). For immunofluorescence detection, cells were processed following the immunofluorescence microscopy protocol.
In vitro tube formation assay
Briefly, 5 × 104 cells were suspended in 500 μL EC medium and then seeded on Matrigel coated plate. After 6–8 h, lattice-like vessel structures formed and then cells were stained with Calcein-AM (Invitrogen) and examined by using fluorescence microscope (Olympus).
1 × 106 cells were lysed in 100 μL RIPA buffer [50 mmol/L Tris-HCl (pH = 7.5), 150 mmol/L NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS] supplemented with NaF, NaVO4 and a protease-inhibitor mixture (Roche). Typically 20 μg of proteins were separated by SDS-PAGE, transferred to a PVDF membrane (Millipore), and blotted with one of the following primary antibodies and then HRP-conjugated secondary antibodies. The quantification of western blot was performed with Image Lab software for ChemiDoc XRS system (Bio-Rad).
Primary antibodies for western blotting include anti-WRN (Santa Cruz Biotechnology, Inc.), anti-Progerin (Santa Cruz Biotechnology, Inc.), anti-P21 (Cell Signaling Technology, Inc.), anti-LAP2β (BD Bioscience, Inc.), anti-HP1α (Cell Signaling Technology, Inc.), anti-Actin (Santa Cruz, Inc.), anti-Lamin B1 (Abcam, Inc.), anti-P16 (BD Bioscience, Inc.), anti-H3K9me3 (Abcam, Inc.), anti-β-Tubulin (Santa Cruz, Inc.).
Total RNA was extracted by using TRIzol reagent (Invitrogen). 2 μg of RNA was converted to cDNA by using GoScript Reverse Transcription System (Promega), and 1/50 volume of the cDNA reaction was applied to PCR using primers for human GAPDH, Progerin. RT-qPCR was performed by using iTaq Universal SYBR Green Supermix (Bio-Rad).
Primers used for RT-PCR: GAPDH-F, 5′-TCGGAGTCAACGGATTTGGT-3′; GAPDH-R, 5′-TTGCCATGGGTGGAATCATA-3′; Progerin-F, 5′-ACTGCAGCAGCTCGGGG-3′; Progerin-R, 5′-TCTGGGGGCTCTGGGC-3′.
Cells seeded on microscope coverslips were fixed with 4% formaldehyde in PBS for 30 min, permeabilized with 0.4% Triton X-100 in PBS for 25 min, and blocked with 10% donkey serum in PBS for 1 h. The coverslips were incubated with primary antibody (diluted with 1% donkey serum in PBS) overnight at 4°C and then incubated with fluorescence-labeled secondary antibody (diluted with 1% donkey serum in PBS at 1:500) at room temperature for 1 h. Hoechst 33342 (Invitrogen) was used to stain nuclear DNA.
Antibodies for immunofluorescence were purchased from the following companies. Abcam: anti-NANOG (ab21624), anti-Nucleolin (ab22758); ZSGB-Bio: anti-hSMA (ZM-0003); Sigma: anti-TUJ1 (T2200); Santa Cruz Biotechnology: anti-OCT4 (sc-5279), anti-SOX2 (sc-17320), anti-Progerin (sc-81611), anti-Lamin B (sc-6217); Cell Signaling Technology: anti-HP1α (2616), anti-FOXA2 (8186S), anti-CD144 (2158); Bethyl Laboratories: anti-53BP1 (A300-273A); Millipore: anti-γ-H2AX (05-636); BD Bioscience: anti-LAP2β (611000), anti-eNOS (610296); Vector: anti-Ki67 (VP-RM04); Dako: anti-vWF (A082).
Student’s t-test was used to analyse differences between different cell lines. Results were presented as mean ± SEM. P values < 0.05, P values < 0.01 and P values < 0.001 were considered statistically significant (*, **, ***).
We are grateful to Lei Bai, Ruijun Bai, Mingming Wei and Shikun Ma for administrative assistance, to Hongyu Li, Xing Zhang, Zehua Wang and Pengze Yan for their technical assistance and to Junying Jia (IBP, CAS) and Shuang Sun (IBP, CAS) for their help in FACS. We thank Shuo Guo (IBP, CAS), Xinyi Wu (IBP, CAS) for breeding and management of laboratory animals and Lei Zhou (IBP, CAS) for providing veterinary care. This work was supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (XDA16010100), the National Key R&D Program of China (2015CB964800, 2017YFA0103304, 2017YFA0102802, 2014CB910503), the National High Technology Research and Development Program of China (2015AA020307), CAS (KJZDEW-TZ-L05, and CXJJ-16M271), the National Natural Science Foundation of China (Grant Nos. 81625009, 81330008, 91749202, 91749123, 81371342, 81471414, 81422017, 81401159, 31671429, 81601233, 81671377, 31601109, 31601158, 81771515 and 81701388), Program of Beijing Municipal Science and Technology Commission (Z151100003915072), the Thousand Young Talents Program of China, and the State Key Laboratory of Stem Cell and Reproductive Biology (2016SRLab-KF13). Work in the laboratory of J.C.I.B. was supported by The Glenn Foundation, The Progeria Research Foundation, Universidad Catolica San Antonio de Murcia (UCAM) and Fundacion Dr. Pedro Guillen.
ECs, endothelial cells; ESCs, embryonic stem cells; HGPS, Hutchinson-Gilford progeria syndrome; iPSCs, induced pluripotent stem cells; MSCs, mesenchymal stem cells; NO, nitric oxide; VSMCs, vascular smooth muscle cells; WS, Werner syndrome
COMPLIANCE WITH ETHICS GUIDELINES
Zeming Wu, Weiqi Zhang, Moshi Song, Wei Wang, Gang Wei, Wei Li, Jinghui Lei, Yu Huang, Yanmei Sang, Piu Chan, Chang Chen, Jing Qu, Keiichiro Suzuki, Juan Carlos Izpisua Belmonte and Guang-Hui Liu declare that they have no conflict of interest. This article does not contain any studies with human or animal subjects performed by the any of the authors.
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