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Engineering of Yarrowia lipolytica for producing pyruvate from glycerol

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Abstract

The present study aims to increase pyruvate production by engineering Yarrowia lipolytica through modifying the glycerol metabolic pathway. Results: Wild-type Yarrowia lipolytica (Po1d) was engineered to produce six different strains, namely ZS099 (by over-expressing PYK1), ZS100 (by deleting DGA2), ZS101 (by over-expressing DAK1, DAK2, and GCY1), ZS102 (by over-expressing GUT1 and GUT2), ZS103 (by over-expressing GUT1) and ZSGP (by over-expressing POS5 and deleting GPD2). Production of pyruvate from engineered and control strains was determined using high-performance liquid chromatography (HPLC). Subsequently, the fermentation conditions for producing pyruvate were optimized, including the amount of initial inoculation, the addition of calcium carbonate (CaCO3), thiamine and glycerol. Finally, for scaled-up purposes, a 20-L fermentor was used. It was observed that pyruvate production increased by 136% (8.55 g/L) in ZSGP strain compared to control (3.62 g/L). Furthermore, pyruvate production by ZSGP reached up to 110.4 g/L in 96 h in the scaled-up process. We conclude that ZSGP strain of Y. lipolytica can be effectively used for pyruvate production at the industrial level.

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Abbreviations

DAK:

Dihydroxyacetone kinases

GUT1:

Glycerol kinase

GUT2:

3-Phosphoglycerol dehydrogenase

GPD:

Glyceraldehyde-3-phosphate dehydrogenase

GPP:

Glycerol-1-phosphatase

GCY1:

Glycerol dehydrogenase

Gly-3-p:

Glycerol-3- phosphate

DHA:

1, 3-Dihydroxyacetone

PYK1:

Pyruvate kinase

POS5:

NADH kinase POS5

TAG:

Triacylglycerol

DGA:

Diacylglycerol acyltransferase

DHAP:

Dihydroxyacetone phosphate

MPC:

Mitochondrial pyruvate carrier

GAP:

Glyceraldehyde-3-phosphate

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Acknowledgements

This study was financially supported by the Zhejiang Provincial Natural Science Foundation of China (Grant Nos. LQ18C010006 and LY19C010005), and National Natural Science Foundation of China (Grant Number: 31900497).

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Correspondence to Yinjun Zhang or Wei Yuan.

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Please check the following as appropriate: (a) all authors have participated in (a) conception and design, or analysis and interpretation of the data; (b) drafting the article or revising it critically for important intellectual content; and (c) approval of the final version. (b) This manuscript has not been submitted to, nor is under review at another journal or other publishing venue. (c) The authors have no affiliation with any organization with a direct or indirect financial interest in the subject matter discussed in the manuscript. Moral statement: (a) We have no conflict of interest with the editors, reviewers and other personnel of three biotech journals. (b) The subject of our research is microorganisms, which does not involve any human or animal subjects, and does not violate any ethical standards.

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Wang, S., Yang, Y., Yu, K. et al. Engineering of Yarrowia lipolytica for producing pyruvate from glycerol. 3 Biotech 12, 98 (2022). https://doi.org/10.1007/s13205-022-03158-7

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  • DOI: https://doi.org/10.1007/s13205-022-03158-7

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