Abstract
Bacillus velezensis LPL061, which shows strong exopolysaccharide (EPS) producing capacity, was isolated from carnations in Beijing, China. The complete genome of LPL061 comprised a single circular chromosome (3,907,268 bp; G+C content of 46.7%) with 3,737 coding DNA sequences, 26 rRNA, and 89 tRNA. According to genome analysis, 12 protein-coding genes which related to polysaccharide biosynthesis in LPL061 were identified. Comparative genome analysis revealed that the EPS biosynthetic gene cluster was relatively conserved among Bacillus species. EPS showed approximately 60% inhibitory activity on the α-glucosidase at 100 μg/mL. The results of quantitative reverse transcription PCR further demonstrated that compared to insulin-resistant model with insulin (500 μg/mL) (without EPS treatment), the insulin-resistant HepG2 cells treated with EPS decreased the expression of phosphoenolpyruvate carboxykinase (PEPCK) from 4.425 to 0.1587, glucose-6-phosphatase (G6Pase) decreased from 4.272 to 0.1929, and glycogen synthase kinase3β (GSK(3)β) decreased from 2.451 to 0.993, respectively. Meanwhile, EPS treatment increased GS expression and resulted in intracellular glycogen concentration increased from 28.30% to 86.48%, which further supported that EPS form LPL061 could reduce the concentration of blood glucose effectively. These results could be beneficial for better understanding of the hypoglycemic mechanism of B. velezensis LPL061 EPS and developing an EPS-based anti-diabetic agent in the future.
Data availability
The complete genome sequence of B. velezensis LPL061 was deposited at GenBank under the accession number of CP042271. This strain has been deposited in China Center of Industrial Culture Collection under the accession number of CICC NO. 24192. The community metadata standards the “Minimal Information about any (X) Sequence” (MixS) was shown in Table S1.
References
Arjan A, Nennie E, Ossenkoppele GJ et al (1991) Cell mediated cytotoxicity against U937 cells by human monocytes and macrophages in a modified colorimetric MTT assay. A methodological study. J Immunol Methods 141(1):15–22. https://doi.org/10.1016/0022-1759(91)90205-T
Aziz RK, Bartels D, Best AA et al (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. https://doi.org/10.1186/1471-2164-9-75
Bajpai VK, Rather IA, Park YH (2016) Partially purified exo-polysaccharide from Lactobacillus Sakei Probio 65 with antioxidant, α-glucosidase and tyrosinase inhibitory potential. J Food Biochem 40(3):264–274. https://doi.org/10.1111/jfbc.12230
Bartlett PJ, Gaspers LD, Pierobon N et al (2014) Calcium-dependent regulation of glucose homeostasis in the liver. Cell Calcium 55:306–316. https://doi.org/10.1016/j.ceca.2014.02.007
Blair KM, Turner L, Winkelman JT et al (2008) A molecular clutch disables flagella in the Bacillus subtilis biofilm. Science 320:1636–1638. https://doi.org/10.1126/science.1157877
Charnock SJ, Davies GJ (1999) Structure of the nucleotide-diphospho-sugar transferase, SspA from Bacillus subtilis, in native and nucleotide-complexed forms. Biochemistry 38:6380–6385. https://doi.org/10.1021/bi990270y
Chen Z, Liu P, Li ZP et al (2006) Identification of key genes involved in polysaccharide bioflocculant synthesis in Bacillus licheniformis. Biotechnol Bioeng 11(3):645–655. https://doi.org/10.1002/bit.26189
Dubois M, Gilles KA, Hamilton JK et al (1956) Colorimetric method for determination of sugars and related substances. Anal Chem 28:350–356. https://doi.org/10.1021/ac60111a017
Emanuele Z, Deborah MW, Aidan C et al (2016) Production, properties, and industrial food application of lactic acid bacteria-derived exopolysaccharides. Appl Microbiol Biotechnol 100:1121–1135. https://doi.org/10.1007/s00253-015-7172-2
Geng WT, Cao MF, Song CJ et al (2011) Complete genome sequence of Bacillus amyloliquefaciens LL3, which exhibits glutamic acid-independent production of poly-γ-glutamic acid. J Bacteriol 193:3393–3394. https://doi.org/10.1128/JB.05058-11
Guo CR, Zhang CF, Li L et al (2014) Hypoglycemic and hypolipidemic effects of oxymatrine in high-fat diet and streptozotocin-induced diabetic rats. Phytomedicine 21(6):807–814. https://doi.org/10.1016/j.phymed.2014.02.007
Han YZ, Liu E, Liu LS et al (2015) Rheological, emulsifying and thermostability properties of two exopolysaccharides produced by Bacillus amyloliquefaciens LPL061. Carbohyd Polym 115:230–237. https://doi.org/10.1016/j.carbpol.2014.08.044
Kanehisa M, Sato Y, Kawashima M et al (2016) KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res 44:457–462. https://doi.org/10.1093/nar/gkv1070
Kim JS, Hyun TK, Kim MJ (2011) The inhibitory effects of ethanol extracts from sorghum, foxtail millet and proso millet on α-glucosidase and α-amylase activities. Food Chem 124(4):1647–1651. https://doi.org/10.1016/j.foodchem.2010.08.020
Kim KM, Lee K, Lee GY, Jin H (2015) Anti-diabetic efficacy of KICG1338, a novel glycogen synthase kinase-3β inhibitor, and its molecular characterization in animal models of type 2 diabetes and insulin resistance. Mol Cell Endocrinol 409:1–10. https://doi.org/10.1016/j.mce.2015.03.011
Kurukulasuriya R, Link JT, Madar DJ (2003) Potential drug targets and progress towards pharmacologic inhibit ion of hepatic glucose production. Curr Med Chem 10(2):123–125. https://doi.org/10.2174/0929867033368556
Li Y, Zhang C, Fan Y, Liu L, Li P, Han Y (2013) Optimization of fermentation conditions for exopolysaccharide production by Bacillus amyloliquefaciens LPL061. Food Science 34(07):185–189 (in Chinese)
Liu CF, Tseng KC, Chiang SS, Lee BH (2011) Immunomodulatory and antioxidant potential of Lactobacillus exopolysaccharides. J Sci Food Agric 91:2284–2291. https://doi.org/10.1002/jsfa.4456
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25:402–408. https://doi.org/10.1006/meth.2001.1262
Lochhead PA, Salt IP, Walker KS (2000) 5-aminoimidazole-4-carboxamide riboside mimics the effects of insulin on the expression of the 2 key gluconeogenic genes PEPCK and glucose-6-phosphatase. Diabetes 49(6):896–903. https://doi.org/10.2337/diabetes.49.6.896
Mosmann T (1983) Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays. J Immunol Methods 65:55–63. https://doi.org/10.1016/0022-1759(83)90303-4
Park KY, Kim B, Hyun CK (2015) Lactobacillus rhamnosus GG improves glucose tolerance through alleviating ER stress and suppressing macrophage activation in db/db mice. J Clin Biochem Nutr 56:240–246. https://doi.org/10.3164/jcbn.14-116
Postic C, Dentin R, Girard J (2004) Role of the liver in the control of carbohydrate and lipid homeostasis. Diabetes Metab 30(5):398–408. https://doi.org/10.1016/s1262-3636(07)70133-7
Qin Y, Han Y, Yu Y et al (2015) Complete genome sequence of Bacillus amyloliquefaciens L-S60, a plant growth-promoting and antifungal bacterium. J Biotechnol 212:67–68. https://doi.org/10.1016/j.jbiotec.2015.08.008
Rangika BS, Dayananda PD, Peiris DC (2015) Hypoglycemic and hypolipidemic activities of aqueous extract of flowers from Nycantus arbortristis L. in male mice. BMC Complement Med Ther 15(1):289. https://doi.org/10.1186/s12906-015-0807-0
Rey MW, Ramaiya P, Nelson BA et al (2004) Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species. Genome Biol 5(10):r77. https://doi.org/10.1186/gb-2004-5-10-r77
Rui LY (2014) Energy metabolism in the liver. Compr Physiol 4(1):177–197. https://doi.org/10.1002/cphy.c130024
Tatusov RL, Fedorova ND, Jackson JD et al (2003) The COG database: an updated version includes eukaryotes. BMC Bioinform 4:41. https://doi.org/10.1186/1471-2105-4-41
Teng H, Chen L, Song H (2016) The potential beneficial effects of phenolic compounds isolated from A. pilosa Ledeb on insulin-resistant hepatic HepG2 cells. Food Funct 7(10):4400–4409. https://doi.org/10.1039/C5FO01067E
Veith B, Herzberg C, Steckel S et al (2004) The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential. J Mol Microbiol Biotechnol 7(4):204–211. https://doi.org/10.1159/000079829
Xu R, Shen Q, Ding X et al (2011) Chemical characterization and antioxidant activity of an exopolysaccharide fraction isolated from Bifidobacterium animalis RH. Eur Food Res Technol 232(2):231–240. https://doi.org/10.1007/s00217-010-1382-8
Yadav H, Jain S, Sinha PR (2008) Oral administration of dahi containing probiotic Lactobacillusacidophilus and Lactobacilluscasei delayed the progression of streptozotocin-induced diabetes in rats. J Dairy Res 75:189–195. https://doi.org/10.1017/50022029908003129
Yang ZC, Huang W, Zhang JS et al (2019) Baicalein improves glucose metabolism in insulin resistant HepG2 cells. Eur J Pharmacol 854:187–193. https://doi.org/10.1016/j.ejphar.2019.04.005
Yin J, Gao Z, Liu D, Liu Z (2008) Berberine improves glucose metabolism through induction of glycolysis. Am J Physiol Endocrinol Metab 294:148–156. https://doi.org/10.1152/ajpendo.00211.2007
Yu R, Zuo FL, Ma HQ, Chen SW (2019) Exopolysaccharide-producing Bifidobacteriumadolescentis strains with similar adhesion property induce differential regulation of inflammatory immune response in Treg/Th17 axis of DSS-colitis mice. Nutrients 11:782. https://doi.org/10.3390/nu11040782
Zhang C, Li Y, Fan Y, Liu L, Li PL (2012) Screening and identification of an exopolysaccharide-producing Bacillus sp. China Brew 31(10):82–85 (in Chinese)
Zheng XK, Li YJ, Zhang L et al (2011) Antihyperglycemic activity of Selaginella tamariscina (Beauv.) Spring. J Ethnopharmacol 133:531–537. https://doi.org/10.1016/j.jep.2010.10.028
Funding
This project was funded by the National Natural Science Foundation of China (Nos. 31671831 and 31271827), Beijing Innovation Team Project of Sturgeon and Trout (BAIC08-2020).
Author information
Authors and Affiliations
Contributions
RYW and PLL designed the experiments. RYW performed the experiments. RYW, YXQ and QS analyzed the results and wrote the manuscript. All authors read and approved the final manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Wu, R., Qin, Y., Shen, Q. et al. The complete genome sequence of Bacillus velezensis LPL061, an exopolysaccharide-producing bacterium. 3 Biotech 10, 243 (2020). https://doi.org/10.1007/s13205-020-02228-y
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s13205-020-02228-y