Skip to main content
Log in

1H, 15N and 13C resonance assignments of a minimal CPSF73-CPSF100 C-terminal heterodimer

  • Article
  • Published:
Biomolecular NMR Assignments Aims and scope Submit manuscript

Abstract

The initial pre-mRNA transcript in eukaryotes is processed by a large multi-protein complex in order to correctly cleave the 3’ end, and to subsequently add the polyadenosine tail. This cleavage and polyadenylation specificity factor (CPSF) is composed of separate subunits, with structural information available for both isolated subunits and also larger assembled complexes. Nevertheless, certain key components of CPSF still lack high-resolution atomic data. One such region is the heterodimer formed between the first and second C-terminal domains of the endonuclease CPSF73, with those from the catalytically inactive CPSF100. Here we report the backbone and sidechain resonance assignments of a minimal C-terminal heterodimer of CPSF73–CPSF100 derived from the parasite Encephalitozoon cuniculi. The assignment process used several amino-acid specific labeling strategies, and the chemical shift values allow for secondary structure prediction.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Albrecht TR, Wagner EJ (2012) snRNA 3’ end formation requires heterodimeric association of integrator subunits. Mol Cell Biol 32:1112–1123

    Article  Google Scholar 

  • Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293

    Article  Google Scholar 

  • Dominski Z, Yang XC, Marzluff WF (2005) The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing. Cell 2005 123:37–48

    Google Scholar 

  • Dominski Z (2010) The hunt for the 3’ endonuclease. Wiley Interdiscip Rev RNA 1:325–340

    Article  Google Scholar 

  • Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, Delbac F, El Alaoui H, Peyret P, Saurin W, Guoy M, Weissenbach J, Vivarès CP (2001) Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414:450–453

    Article  ADS  Google Scholar 

  • Lin J, Xu R, Wu X, Shen Y, Li QQ (2017) Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination. Plant 91:829–839

    Google Scholar 

  • Mandel CR, Kaneko S, Zhang H, Gebauer D, Vethantham V, Manley JL, Tong L (2006) Polyadenylation factor CPSF-73 is the pre-mRNA 3’-end-processing endonuclease. Nature 444:953–956

    Article  ADS  Google Scholar 

  • Michalski D, Steiniger M (2015) In vivo characterization of the Drosophila mRNA 3’ end processing core cleavage complex. RNA 21:1404–1418

    Article  Google Scholar 

  • Pfleiderer MM, Galej WP (2021) Structure of the catalytic core of the Inegrator complex. Mol Cell 81:1246–1259

    Article  Google Scholar 

  • Ryan K, Calvo O, Manley JL (2004) Evidence that polyadenylation factor CPSF-73 is the mRNA 3’ processing endonuclease. RNA 10:565–573

    Article  Google Scholar 

  • Senn H, Werner B, Messerle BA, Weber C, Traber R, Wüthrich K (1989) Stereospecific assignment of the methyl 1H NMR lines of valine and leucine in polypeptides by nonrandom 13 C labelling. FEBS Lett 249:113–118

    Article  Google Scholar 

  • Shen Y, Bax A (2013) Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks. J Biomol NMR 56:227–241

    Article  Google Scholar 

  • Sun Y, Zhang Y, Aik WS, Yang XC, Marzluff WF, Walz T, Dominski Z, Tong L (2020) Structure of an active human histone pre-mRNA 3’-end processing machinery. Science 367:700–703

    Article  ADS  Google Scholar 

  • Tamiola K, Acar B, Mulder FA (2010) Sequence-specific random coil chemical shifts of intrinsically disordered proteins. J Am Chem Soc 132:18000–18003

    Article  Google Scholar 

  • Wu Y, Albrecht TR, Baillat D, Wagner EJ, Tong L (2017) Molecular basis for the interaction between integrator subunits IntS9 and IntS11 and its functional importance. Proc Natl Acad Sci U S A 114:4394–4399

    Article  ADS  Google Scholar 

  • Zhang Y, Sun Y, Shi Y, Walz T, Tong L (2020) Structural insights into the human pre-mRNA 3’-end processing machinery. Mol Cell 77:800–809

    Article  Google Scholar 

  • Zheng H, Qi Y, Hu S, Cao X, Xu C, Yin Z, Chen X, Li Y, Liu W, Li J, Wang J, Wei G, Liang K, Chen FX, Xu Y (2020) Identification of Integrator-PP2A complex (INTAC), an RNA polymerase II phosphatase. Science 370:eabb5872

    Article  Google Scholar 

Download references

Acknowledgements

We would like to thank Axelle Grélard and Estelle Morvan. This work has benefited from the facilities and expertises of the Biophysical and Structural Chemistry platform (BPCS) at IECB, CNRS UAR3033, Inserm US001, Bordeaux University. Financial support was provided by the French National Institute of Medical Research (INSERM).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Cameron D. Mackereth.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Thore, S., Fribourg, S. & Mackereth, C.D. 1H, 15N and 13C resonance assignments of a minimal CPSF73-CPSF100 C-terminal heterodimer. Biomol NMR Assign 17, 43–48 (2023). https://doi.org/10.1007/s12104-023-10118-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12104-023-10118-6

Keywords

Navigation