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1H, 13C and 15N resonance assignments of a C-terminal domain of human CHD1

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Abstract

Chromatin remodelling proteins are an essential family of eukaryotic proteins. They harness the energy from ATP hydrolysis and apply it to alter chromatin structure in order to regulate all aspects of genome biology. Chromodomain helicase DNA-binding protein 1 (CHD1) is one such remodelling protein that has specialised nucleosome organising abilities and is conserved across eukaryotes. CHD1 possesses a pair of tandem chromodomains that directly precede the core catalytic Snf2 helicase-like domain, and a C-terminal SANT-SLIDE DNA-binding domain. We have identified an additional conserved domain in the C-terminal region of CHD1. Here, we report the backbone and side chain resonance assignments for this domain from human CHD1 at pH 6.5 and 25 °C (BMRB No. 25638).

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References

  • Allen MD, Religa TL, Freund SM, Bycroft M (2007) Solution structure of the BRK domains from CHD7. J Mol Biol 371:1135–1140. doi:10.1016/j.jmb.2007.06.007

    Article  Google Scholar 

  • Burkhardt L, Fuchs S, Krohn A, Masser S, Mader M, Kluth M, Bachmann F, Huland H, Steuber T, Graefen M, Schlomm T, Minner S, Sauter G, Sirma H, Simon R (2013) CHD1 is a 5q21 tumor suppressor required for ERG rearrangement in prostate cancer. Cancer Res 73:2795–2805. doi:10.1158/0008-5472.CAN-12-1342

    Article  Google Scholar 

  • Flaus A, Martin DM, Barton GJ, Owen-Hughes T (2006) Identification of multiple distinct Snf2 subfamilies with conserved structural motifs. Nucleic Acids Res 34:2887–2905. doi:10.1093/nar/gkl295

    Article  Google Scholar 

  • Gaspar-Maia A, Alajem A, Polesso F, Sridharan R, Mason MJ, Heidersbach A, Ramalho-Santos J, McManus MT, Plath K, Meshorer E, Ramalho-Santos M (2009) Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature 460:863–868. doi:10.1038/nature08212

    ADS  Google Scholar 

  • Gkikopoulos T, Schofield P, Singh V, Pinskaya M, Mellor J, Smolle M, Workman JL, Barton GJ, Owen-Hughes T (2011) A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization. Science 333:1758–1760. doi:10.1126/science.1206097

    Article  ADS  Google Scholar 

  • Keller R (2004) The computer aided resonance assignment tutorial, 1st edn. CANTINA Verlag, Switzerland

    Google Scholar 

  • Mansfield RE, Musselman CA, Kwan AH, Oliver SS, Garske AL, Davrazou F, Denu JM, Kutateladze TG, Mackay JP (2011) Plant homeodomain (PHD) fingers of CHD4 are histone H3-binding modules with preference for unmodified H3K4 and methylated H3K9. J Biol Chem 286:11779–11791. doi:10.1074/jbc.M110.208207

    Article  Google Scholar 

  • Marley J, Lu M, Bracken C (2001) A method for efficient isotopic labeling of recombinant proteins. J Biomol NMR 20:71–75. doi:10.1023/A:1011254402785

    Article  Google Scholar 

  • Ryan DP, Owen-Hughes T (2011) Snf2-family proteins: chromatin remodellers for any occasion. Curr Opin Chem Biol 15:649–656. doi:10.1016/j.cbpa.2011.07.022

    Article  Google Scholar 

  • Ryan DP, Sundaramoorthy R, Martin D, Singh V, Owen-Hughes T (2011) The DNA-binding domain of the Chd1 chromatin-remodelling enzyme contains SANT and SLIDE domains. EMBO J 30:2596–2609. doi:10.1038/emboj.2011.166

    Article  Google Scholar 

  • Serrano P, Pedrini B, Mohanty B, Geralt M, Herrmann T, Wuthrich K (2012) The J-UNIO protocol for automated protein structure determination by NMR in solution. J Biomol NMR 53:341–354. doi:10.1007/s10858-012-9645-2

    Article  Google Scholar 

  • Skene PJ, Hernandez AE, Groudine M, Henikoff S (2014) The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1. Elife 3:02042. doi:10.7554/eLife.02042

    Article  Google Scholar 

Download references

Acknowledgments

This work was supported by a Grant (1063301) from the National Health and Medical Research Council of Australia (NHMRC). J.P.M. was supported by an NHMRC Senior Research Fellowship (1058916). D.P.R. was supported by a NHMRC CJ Martin (Biomedical) Fellowship (457137).

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Correspondence to Joel P. Mackay or Daniel P. Ryan.

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Mohanty, B., Silva, A.P.G., Mackay, J.P. et al. 1H, 13C and 15N resonance assignments of a C-terminal domain of human CHD1. Biomol NMR Assign 10, 31–34 (2016). https://doi.org/10.1007/s12104-015-9631-1

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  • DOI: https://doi.org/10.1007/s12104-015-9631-1

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