Ali A, Yan ER, Chen HYH, Chang SX, Zhao YT, Yang XD, Xu MS (2016) Stand structural diversity rather than species diversity enhances aboveground carbon storage in secondary subtropical forests in Eastern China. Biogeosciences 13:4627–4635
CAS
Google Scholar
Ali A, Lin SL, He JK, Kong FM, Yu JH, Jiang HS (2018a) Climatic water availability is the main limiting factor of biotic attributes across large-scale elevational gradients in tropical forests. Sci Total Environ 647:1211–1221
PubMed
Google Scholar
Ali A, Lohbeck M, Yan E-R (2018b) Forest strata-dependent functional evenness explains whole-community aboveground biomass through opposing mechanisms. For Ecol Manag 424:439–447
Google Scholar
Ali A, Lin SL, He JK, Kong FM, Yu JH, Jiang HS (2019) Elucidating space, climate, edaphic and biodiversity effects on aboveground biomass in tropical forests. Land Degrad Dev. https://doi.org/10.1002/ldr.3278
Article
Google Scholar
Anderson-Teixeira KJ, Wang MMH, Mcgarvey JC, LeBauer DS (2016) Carbon dynamics of mature and regrowth tropical forests derived from a pantropical database (TropForC-db). Glob Chang Biol 22:1690–1709
PubMed
Google Scholar
Apg IV (2016) An update of the Angiosperm Group classification for the orders and families of flowering plants: APG IV. Biol J Linnean Soc 141:399–436
Google Scholar
Barton K (2017) ‘MuMIn’: multi-model inference. R package version 1.40.0. https://cran.r-project.org/web/packages/MuMIn/MuMIn.pdf. Accessed 15 Feb 2018
Bates D, Maechler M, Ben Bolker B, Walker S, Christensen RHB, Singmann H, Dai B, Scheipl F, Grothendieck G, Green P, Fox J (2019) ‘lme4’: linear mixed-effects models using ‘Eigen’ and S4. R package version 1.1-21. https://cran.r-project.org/web/packages/lme4/lme4.pdf. Accessed 31 May 2019
Brown C, Burslem DFRP, Illian JB, Bao L, Brockelman W, Cao M, Chang LW, Dattaraja HS, Davies S, Gunatilleke CVS, Gunatilleke IAUN, Huang J, Kassim AR, LaFrankie JV, Lian J, Lin L, Ma K, Mi X, Nathalang A, Noor S, Ong P, Sukumar R, Su SH, Sun IF, Suresh HS, Tan S, Thompson J, Uriarte M, Valencia R, Yap SL, Ye W, Law R (2013) Multispecies coexistence of trees in tropical forests: spatial signals of topographic niche differentiation increase with environmental heterogeneity. Proc R Soc Lond Ser B Biol sci 280:1764
Google Scholar
Burnham KP, Anderson DR (2002) Model selection and multimodel inference: a practical information-theoretic approach. Springer, New York
Google Scholar
Burnham KP, Anderson DR, Huyvaert KP (2011) AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons. Behav Ecol Sociobiol 65:23–35
Google Scholar
Chao A, Gotelli NJ, Hsieh TC, Sander EL, Ma KH, Colwell RK, Ellison AM (2014) Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. Ecol Monogr 84:45–67
Google Scholar
Chave J, Coomes D, Jansen S, Lewis SL, Swenson NG, Zanne AE (2009) Towards a worldwide wood economics spectrum. Ecol Lett 12:351–366
PubMed
Google Scholar
Chave J, Réjou-Méchain M, Búrquez A et al (2014) Improved allometric models to estimate the aboveground biomass of tropical trees. Glob Chang Biol 20:3177–3190
PubMed
Google Scholar
Chiang J-M, Spasojevic MJ, Muller-Landau HC, Sun I-F, Lin Y, Su S-H, Chen Z-S, Chen C-T, Swenson NG, McEwan RW (2016) Functional composition drives ecosystem function through multiple mechanisms in a broadleaved subtropical forest. Oecologia 182:829–840
PubMed
Google Scholar
Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18:117–143
Google Scholar
Colwell RK, Chao A, Gotelli NJ, Lin SY, Mao CH, Chazdon RL, Longino JT (2012) Models and estimators linking individual-based and sample based rarefaction, extrapolation and comparison of assemblages. J Plant Ecol 5:3–21
Google Scholar
Cornwell WK, Ackerly DD (2010) A link between plant traits and abundance: evidence from coastal California woody plants. J Ecol 98:814–821
Google Scholar
Crawley MJ (2012) The R book, 2nd edn. Wiley, London
Google Scholar
De’ath G (2002) Multivariate regression trees: a new technique for modeling species-environment relationships. Ecology 83:1105–1117
Google Scholar
EMBRAPA (1997) Manual de métodos de análises de solo, 2nd edn. Centro Nacional de Pesquisa de Solos, Empresa Brasileira de Pesquisa Agropecuária, Rio de Janeiro
Google Scholar
Grime JP (1973) Competitive exclusion in herbaceous vegetation. Nature 242:344–347
Google Scholar
Guo Y, Wang B, Mallik AU, Huang F, Xiang W, Ding T, Wen S, Lu S, Li D, He Y, Li X (2017) Topographic species-habitat associations of tree species in a heterogeneous tropical forest. J Plant Ecol 57:1–10
Google Scholar
Hsieh TC, Ma KH, Chao A. (2016) ‘iNEXT’: iNterpolation and EXTrapolation for species diversity. R package version 2.0.12.. https://cran.r-project.org/web/packages/iNEXT/iNEXT.pdf Accessed 10 Dec 2017
Husson F, Josse J, Le S, Mazet J (2018) “FactoMineR” package multivariate: exploratory data analysis and data mining. RStudio package version 1.0.14. https://cran.r-project.org/web/packages/FactoMineR/FactoMineR.pdf
John R, Dalling JW, Harms KE, Yavitt JB, Stallard RF, Mirabello M, Hubbell SP, Valencia R, Navarrete H, Vallejo M, Foster RB (2007) Soil nutrients influence spatial distributions of tropical tree species. Proc Natl Acad Sci USA 104:864–869
CAS
PubMed
PubMed Central
Google Scholar
Jucker T, Bongalov B, Burslem DFRP, Nilus R, Dalponte M, Lewis SL, Phillips OL, Qie L, Coomes DA (2018) Topography shapes the structure, composition and function of tropical forest landscapes. Ecol Lett 21:989–1000
PubMed
PubMed Central
Google Scholar
Kahmen H, Faig W (1988) Surveying. Walter Gruyter e Co, Berlin, p 578
Google Scholar
Katabuchi M, Kurokawa H, Davies SJ, Tan S, Nakashizuka T (2012) Soil resource availability shapes community trait structure in a species-rich dipterocarp forest. J Ecol 100:643–665
Google Scholar
Lan GY, Hu YH, Cao M, Zhu H (2011) Topography related spatial distribution of dominant tree species in a tropical seasonal rain forest in China. For Ecol Manag 262:1507–1513
Google Scholar
Larsen DR, Speckman PL (2004) Multivariate regression trees for analysis of abundance data. Biometrics 60:543–549
PubMed
Google Scholar
Laurance WF (2009) Conserving the hottest of the hotspots. Biol Conserv 142:1137
Google Scholar
Leuschner C, Moser G, Bertsch C, Röderstein M, Hertel D (2007) Large altitudinal increase in tree root/shoot ratio in tropical mountain forests of Ecuador. Basic Appl Ecol 8:219–230
Google Scholar
Lewis SL, Edwards DP, Galbraith D (2015) Increasing human dominance of tropical forests. Science 349:827–832
CAS
PubMed
Google Scholar
Liu J, Yunhong T, Slik JWF (2014) Topography related habitat associations of tree species traits, composition and diversity in a Chinese tropical forest. For Ecol Manag 330:75–81
Google Scholar
Lohbeck M, Bongers F, Martinez-Ramos M, Poorter L (2016) The importance of biodiversity and dominance for multiple ecosystem functions in a human-modified tropical landscape. Ecology 97:2772–2779
PubMed
Google Scholar
Magnago LFS, Magrach A, Laurance WF, Martins SV, Meira-Neto JA, Simonelli M, Edwards DP (2015) Would protecting tropical forest fragments provide carbon and biodiversity cobenefits under REDD+? Glob Chang Biol 21:3455–3468
PubMed
Google Scholar
Martinez-Arbizu P (2019) pairwiseAdonis: pairwise multilevel comparison using adonis. R package version 2.4-5. https://github.com/pmartinezarbizu/pairwiseAdonis
McEwan RW, Muller RN (2006) Spatial and temporal dynamics in canopy dominance of an old-growth mixed mesophytic forest. Can J For Res 36:1536–1550
Google Scholar
Moeslund JE, Arge L, Bøcher PK, Dalgaard T, Svenning J-C (2013) Topography as a driver of local terrestrial vascular plant diversity patterns. Nord J Bot 31:129–144
Google Scholar
Muledi JI, Bauman D, Drouet T, Vleminckx J, Jacobs A, Lejoly J, Meerts P, Shutcha MN (2017) Fine-scale habitats influence tree species assemblage in a Miombo forest. J Plant Ecol 10:958–969
Google Scholar
Murray-Smith C, Brummitt NA, Oliveira-Filho AT, Bachman S, Moat J, Lughadha EM, Lucas EJ (2009) Plant diversity hotspots in the Atlantic Coastal Forests of Brazil. Conserv Biol 23:151–163
PubMed
Google Scholar
Nychka D, Furrer R, Paige J, Sain S (2019). ‘fields’ package: tools for spatial data. R package version 2.4-5. https://cran.r-project.org/web/packages/fields/fields.pdf. Accessed 10 Feb 2018
Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, Minchin PR, O’Hara RB, Simpson GL, Solymos P, Stevens MHH, Szoecs E, Wagner E (2018) ‘Vegan’: community ecology package. R package version 2.4-6. https://cran.r-project.org/web/packages/vegan/vegan.pdf. Accessed 5 Feb 2018
Paquette A, Messier C (2011) The effect of biodiversity on tree productivity: from temperate to boreal forests. Glob Ecol Biog 20:170–180
Google Scholar
Paula A, Silva AF, Souza AL, Santos FAM (2002) Alterações florísticas ocorridas num período de quatorze anos na vegetação arbórea de uma floresta estacional semidecidual em Viçosa-MG. Rev Árvore 26:743–749
Google Scholar
Pausas JG, Austin MP (2001) Patterns of plant species richness in relation to different environments: an appraisal. J Veg Sci 12:153–166
Google Scholar
Pinheiro J, Bates D (2017) ‘nlme’: linear and nonlinear mixed effects models. R package version 3.1-131. https://cran.r-project.org/web/packages/nlme/nlme.pdf. Accessed 20 Jan 2018
Poorter L (2009) Leaf traits show different relationships with shade tolerance in moist versus dry tropical forests. New Phytol 181:890–900
PubMed
Google Scholar
Poorter L, van der Sande MT, Thompson J, Arets EJMM, Alarcón A, Álvarez-Sánchez J, Ascarrunz N, Balvanera P, Barajas-Guzmán G, Boit A, Bongers F, Carvalho FA, Casanoves F, Cornejo-Tenorio G, Costa FRC, de Castilho CV, Duivenvoorden JF, Dutrieux LP, Enquist BJ, Fernández-Méndez F, Finegan B, Gormley LHL, Healey JR, Hoosbeek MR, Ibarra-Manríquez G, Junqueira AB, Levis C, Licona JC, Lisboa LS, Magnusson WE, Martínez-Ramos M, Martínez-Yrizar A, Martorano LG, Maskell LC, Mazzei L, Meave JA, Mora F, Muñoz R, Nytch C, Pansonato MP, Parr TW, Paz H, Pérez-García EA, Rentería LY, Rodríguez-Velazquez J, Rozendaal DMA, Ruschel AR, Sakschewski B, Salgado-Negret B, Schietti J, Simões M, Sinclair FL, Souza PF, Souza FC, Stropp J, ter Steege H, Swenson NG, Thonicke K, Toledo M, Uriarte M, van der Hout P, Walker P, Zamora N, Peña-Claros M (2015) Diversity enhances carbon storage in tropical forests. Glob Ecol Biogeog 24:1314–1328
Google Scholar
Poorter L, van der Sande MT, Arets EJMM, Ascarrunz N, Enquist BJ, Finegan B, Licona JC, Martínez-Ramos M, Mazzei L, Meave JA, Muñoz R, Nytch CJ, de Oliveira AA, Pérez-García EA, Prado-Junior J, Rodríguez-Velázques J, Ruschel AR, Salgado-Negret B, Schiavini I, Swenson NG, Tenorio EA, Thompson J, Toledo M, Uriarte M, van der Hout P, Zimmerman JK, Peña-Claros M (2017) Biodiversity and climate determine the functioning of Neotropical forests. Glob Ecol Biogeogr 26:1423–1434
Google Scholar
Punchi-Manage R, Getzin S, Wiegand T, Kanagaraj R, Savitri Gunatilleke CV, Nimal Gunatilleke IA, Wiegand K, Huth A (2013) Effects of topography on structuring local species assemblages in a Sri Lankan mixed dipterocarp forest. J Ecol 101:149–160
Google Scholar
R Core Team (2017) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/. Accessed 15 Feb 2018
Reich PB (2014) The world-wide ‘fast-slow’ plant economics spectrum: a traits manifesto. J Ecol 102:275–301
Google Scholar
Réjou-Méchain M, Tanguy A, Piponiot C, Chave J, Hérault B (2017) biomass: an r package for estimating above-ground biomass and its uncertainty in tropical forests. Methods Ecol Evol 8:1163–1167
Google Scholar
Ribeiro MC, Martensen AC, Metzger JP, Tabarelli M, Scarano F, Fortin M-J (2011) The Brazilian Atlantic Forest: a shrinking biodiversity hotspot. In: Zachos F, Habel J (eds) Biodiversity hotspots. Springer, Berlin
Google Scholar
Ripley B (2017) ‘MASS’: support functions and datasets for venables and RIPLEY’s MASS. R package version 7.3-48. https://cran.r-project.org/web/packages/MASS/MASS.pdf. Accessed 1 Feb 2018
Rodrigues AC, Villa PM, Viana NA (2019) Fine-scale topography shape richness, community composition, stem and biomass hyperdominant species in Brazilian Atlantic forest. Ecol Indic 102:208–217
Google Scholar
Rozendaal DMA, Bongers F, Aide TM, Alvarez-Dávila E, Ascarrunz N, Balvanera P, Becknell JM, Bentos TV, Brancalion PHS, Cabral GAL, Calvo-Rodriguez S, Chave J, César RG, Chazdon RL, Condit R, Dallinga JS, de Almeida-Cortez JS, Jong B, Oliveira A, Denslow JS, Dent DH, DeWalt SJ, Dupuy JM, Durán SM, Dutrieux LP, Espírito-Santo MM, Fandino MC, Fernandes GW, Finegan B, García H, Gonzalez N, Moser VG, Hall JS, Hernández-Stefanoni JL, Hubbell S, Jakovac CC, Hernández AJ, Junqueira AB, Kennard D, Larpin D, Letcher SG, Licona J-C, Lebrija-Trejos E, Marín-Spiotta E, Martínez-Ramos M, Massoca PES, Meave JA, Mesquita RCG, Mora F, Müller SC, Muñoz R, de Oliveira Neto SN, Norden N, Nunes YRF, Ochoa-Gaona S, Ortiz-Malavassi E, Ostertag R, Peña-Claros M, Pérez-García EA, Piotto D, Powers JS, Aguilar-Cano J, Rodriguez-Buritica S, Rodríguez-Velázquez J, Romero-Romero MA, Ruíz Jorge, Sanchez-Azofeifa A, de Almeida AS, Silver WL, Schwartz NB, Thomas WW, Toledo M, Uriarte M, Sampaio EVS, van Breugel M, van der Wal H, Martins SV, Veloso MDM, Vester HFM, Vicentini A, Vieira ICG, Villa PM, Williamson GB, Zanini KJ, Zimmerman J, Poorter L (2019) Biodiversity recovery of Neotropical secondary forests. Sci Adv 5:3114
Google Scholar
Scarano FR, Ceotto P (2015) Brazilian Atlantic forest: impact, vulnerability, and adaptation to climate change. Biodivers Conserv 24:2319
Google Scholar
Therneau T, Atkinson B, Ripley B (2017) ‘rpart’: recursive partitioning and regression trees. R package version 4.1-11. https://CRAN.R-project.org/package=rpart. Accessed 4 March 2018
Tilman D (1999) The ecological consequences of changes in biodiversity: a search for general principles. Ecology 80:1455–1474
Google Scholar
Toledo M, Peña-Claros M, Bongers F, Alarcón A, Balcázar J, Chuviña J, Leaño C, Licona JC, Poorter L (2012) Distribution patterns of tropical woody species in response to climatic and edaphic gradients. J Ecol 100:253–263
Google Scholar
Villa PM, Martins SV, Oliveira Neto SN, Rodrigues AC, Martorano L, Delgado L, Cancio NM, Gastauerg M (2018) Intensification of shifting cultivation reduces forest resilience in the northern Amazon. For Ecol Manag 430:312–320
Google Scholar
Wang Q, Punchi-Manage R, Lu Z, Franklin SB, Wang Z, Li Y, Chi X, Bao D, Guo Y, Xu JLY, Qiao X, Jiang M (2016) Effects of topography on structuring species assemblages in a subtropical forest. J Plant Ecol 10:440–449
Google Scholar
Wickham H, François R, Henry L, Müller K (2018). ‘dplyr’ package: a grammar of data manipulation. R package version 7.3-48. https://cran.r-project.org/web/packages/dplyr/dplyr.pdf. Accessed 15 Feb 2018
Williams BM, Houseman GR (2014) Experimental evidence that soil heterogeneity enhances plant diversity during community assembly. J Plant Ecol 7:461–469
Google Scholar
Zanne AE, Lopez-Gonzalez G, Coomes DA, Ilic J, Jansen S, Lewis SL, Miller RB, Swenson NG, Wiemann MC, Chave J (2009) Data from: towards a worldwide wood economics spectrum. Dryad digital repository. https://doi.org/10.5061/dryad.234. Accessed 3 Dec 2017