Abstract
Purpose
Polybrominated diphenyl ethers (PBDEs) and polycyclic aromatic hydrocarbons are common contaminants in soils. In PBDEs, decabromodiphenyl ether (BDE-209) is the most persistent, while benzo(a)pyrene (BaP) is an identified human carcinogen. This study is aimed to solve the contamination of BDE-209 and BaP in soils by adjusting environmental variables and amendments of microorganisms or nutrients.
Methods
A batch test and a sandbox test were performed. In the batch test on an artificial soil, the Taguchi method was applied to define optimum environmental factors. The sandbox test was conducted to verify if addition of soybean soil nanoemulsion (SONE) or acclimated microorganisms can assist the bioremediation of BDE-209 and BaP in rice-paddy soil under optimum volumetric water content (θW). Next-generation sequencing (NGS) was performed to observe the microbial profile, correlation, and interaction.
Results
The batch test revealed that the θW is the predominant factor for both contaminants. In the sandbox test, bioaugmentation with SONE-amended group achieved 55% and 74% removals in 70 days for fresh BDE-209 and BaP, respectively. Yet for weathered BDE-209, natural attenuation group was the best with about 75% removal in 70 days. NGS data showed that a few dominant genera formed a strong alliance against a large group of others.
Conclusions
The results suggest that the θW is the key parameter and proper amendment of soil organic matter, and SONE can enhance the bioremediation. The results implied that natural attenuation with water flooding could be effective for the soils historically contaminated by BDE-209.
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References
Ahmed M, Focht D (1973) Degradation of polychlorinated biphenyls by two species of Achromobacter. Can J Microbiol 19:47–52
Aitken MD, Stringfellow WT, Nagel RD, Kazunga C, Chen SH (1998) Characteristics of phenanthrene-degrading bacteria isolated from soils contaminated with polycyclic aromatic hydrocarbons. Can J Microbiol 44:743–752
Anna Gałązka MK, Perzyński A (2012) The efficiency of rhizosphere bioremediation with Azospirillum sp. and Pseudomonas stutzeri in soils freshly contaminated with PAHs and diesel fuel. Pol J Environ Stud 21:345–353
Arulazhagan P, Vasudevan N (2009) Role of a moderately halophilic bacterial consortium in the biodegradation of polyaromatic hydrocarbons. Mar Pollut Bull 58:256–262
Bajagain R, Gautam P, Jeong S-W (2020a) Biodegradation and post-oxidation of fuel-weathered field soil. Sci Total Environ 734, 139452
Bajagain R, Gautam P, Jeong S-W (2020b) Degradation of petroleum hydrocarbons in unsaturated soil and effects on subsequent biodegradation by potassium permanganate. Environ Geochem Health 42:1705–1714
Bajagain R, Gautam P, Jeong S-W (2021) Improved delivery of remedial agents using surface foam spraying with vertical holes into unsaturated diesel-contaminated soil for total petroleum hydrocarbon removal. Appl Sci 11:781
Balk M, Mehboob F, van Gelder AH, Rijpstra WIC, Damsté JSS, Stams AJM (2010) (Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage. Appl Microbiol Biotechnol 88:595–603
Balseiro-Romero M, Monterroso C, Casares JJ (2018) Environmental fate of petroleum hydrocarbons in soil: review of multiphase transport, mass transfer, and natural attenuation processes. Pedosphere 28:833–847
Barnsley EA (1975) The bacterial degradation of fluoranthene and benzo[a]pyrene. Can J Microbiol 21:1004–1008
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG (2013) Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods 10:57–59
Boonchan S, Britz ML, Stanley GA (2000) Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Appl Environ Microbiol 66:1007–1019
Boutard M, Cerisy T, Nogue P-Y, Alberti A, Weissenbach J, Salanoubat M, Tolonen AC (2014) Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass. PLoS Genet 10:e1004773–e1004773
Caporaso JG et al (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336
Chang S-C, Lin S-J, Chen T-W, Lin Y-T (2012) A biocide-free mineral oil nanoemulsion exhibiting strong bactericidal activity against Mycobacterium immunogenum and Pseudomonas aeruginosa. Int Biodeterior Biodegradation 70:66–73
Chang S-C, Wang W-T, Chen Y-J, Chen T-W, Chiang P-Y, Lo Y-S (2017) Emulsion-enhanced recovery and biodegradation of decabrominated diphenyl ether in river sediments. J Soils Sediments 17:1197–1207
Chang S-C, Yeh C-W, Lee S-K, Chen T-W, Tsai L-C (2019) Efficient remediation of river sediments contaminated by polychlorinated biphenyls and hexachlorobenzene by coupling in situ phase-inversion emulsification and biological reductive dechlorination. Int Biodeterior Biodegradation 140:133–143
Chang S-C, Wu M-H, Chen T-W (2021a) Emulsion-enhanced remediation of lindane and DDT in soils. J Soils Sediments 21:469–486
Chang X, Kang M, Feng J, Zhang J, Wang X (2021b) Effects of BDE-209 exposure on growth performance, intestinal digestive enzymes, and intestinal microbiome in common carp (Cyprinus carpio L.). Aquacult Fish
Chang Y-T, Chao W-L, Chen H-Y, Li H, Boyd SA (2020) Characterization of a sequential UV photolysis-biodegradation process for treatment of decabrominated diphenyl ethers in sorbent/water systems. Microorganisms 8:633
Chaussonnerie S, Saaidi P-L, Ugarte E, Barbance A, Fossey A, Barbe V, Gyapay G, Brüls T, Chevallier M, Couturat L, Fouteau S, Muselet D, Pateau E, Cohen GN, Fonknechten N, Weissenbach J, Le Paslier D (2016) Microbial degradation of a recalcitrant pesticide: chlordecone. Front Microbiol 7:2025–2025
Chen J, Wang C, Shen Z-J, Gao G-F, Zheng H-L (2017) Insight into the long-term effect of mangrove species on removal of polybrominated diphenyl ethers (PBDEs) from BDE-47 contaminated sediments. Sci Total Environ 575:390–399
Chen J, Wang P-F, Wang C, Liu J-J, Gao H, Wang X (2018a) Spatial distribution and diversity of organohalide-respiring bacteria and their relationships with polybrominated diphenyl ether concentration in Taihu Lake sediments. Environ Pollut 232:200–211
Chen J, Wang P-F, Wang C, Wang X, Gao H (2018b) Effects of decabromodiphenyl ether and planting on the abundance and community composition of nitrogen-fixing bacteria and ammonia oxidizers in mangrove sediments: a laboratory microcosm study. Sci Total Environ 616–617:1045–1055
Chen L, Hu C, Lok-Shun Lai N, Zhang W, Hua J, Lam PKS, Lam JCW, Zhou B (2018c) Acute exposure to PBDEs at an environmentally realistic concentration causes abrupt changes in the gut microbiota and host health of zebrafish. Environ Pollut 240:17–26
Chen S, Yin H, Ye J, Peng H, Zhang N, He B (2013) Effect of copper (II) on biodegradation of benzo [a] pyrene by Stenotrophomonas maltophilia. Chemosphere 90:1811–1820
Chen T-W, Chang S-C (2020) Potential microbial indicators for better bioremediation of an aquifer contaminated with vinyl chloride or 1,1-dichloroethene. Water Air Soil Pollut 231:239
Chi Y, Lin Y, Lu Y, Huang Q, Ye G, Dong S (2019a) Gut microbiota dysbiosis correlates with a low-dose PCB126-induced dyslipidemia and non-alcoholic fatty liver disease. Sci Total Environ 653:274–282
Chi Y, Wang H, Lin Y, Lu Y, Huang Q, Ye G, Dong S (2019b) Gut microbiota characterization and lipid metabolism disorder found in PCB77-treated female mice. Toxicology 420:11–20
Chou H-L, Chang Y-T, Liao Y-F, Lin C-H (2013) Biodegradation of decabromodiphenyl ether (BDE-209) by bacterial mixed cultures in a soil/water system. Int Biodeterior Biodegradation 85:671–682
Chou T-H, Ou M-H, Wu T-Y, Chen D-Y, Shih Y-h (2019) Temporal and spatial surveys of polybromodiphenyl ethers (PBDEs) contamination of soil near a factory using PBDEs in northern Taiwan. Chemosphere 236, 124117
Cruz R, Palmeira JD, Martins ZE, Faria MA, Ferreira H, Marques A, Casal S, Cunha SC (2020) Multidisciplinary approach to determine the effect of polybrominated diphenyl ethers on gut microbiota. Environment Pollut 260, 113920
Delaune RD, Patrick WH, Casselman ME (1981) Effect of sediment pH and redox conditions on degradation of benzo(a)pyrene. Mar Pollut Bull 12:251–253
Deng D, Guo J, Sun G, Chen X, Qiu M, Xu M (2011) Aerobic debromination of deca-BDE: Isolation and characterization of an indigenous isolate from a PBDE contaminated sediment. Int Biodeterior Biodegradation 65:465–469
Duhamel M, Edwards EA (2006) Microbial composition of chlorinated ethene-degrading cultures dominated by Dehalococcoides. FEMS Microbiol Ecol 58:538–549
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27:2194–2200
Field JA, Sierra-Alvarez R (2004) Biodegradability of chlorinated solvents and related chlorinated aliphatic compounds. Reviews in Environmental Science and Bio/technology 3:185–254
Galazka A, Krol MJ, Perzynski A (2012) The efficiency of rhizosphere bioremediation with azospirillum sp. and pseudomonas stutzeri in soils freshly contaminated with PAHs and diesel. Pol J Environ Stud 21:345–353
Gautam P, Bajagain R, Jeong S-W (2019) Soil infiltration capacity of chemical oxidants used for risk reduction of soil contamination. Ecotoxicol Environment Safe 183, 109548
Gautam P, Bajagain R, Jeong SW (2020) Combined effects of soil particle size with washing time and soil-to-water ratio on removal of total petroleum hydrocarbon from fuel contaminated soil. Chemosphere 250, 126206
Gautam P, Jeong S-W (2021) Pretreatment of diesel-contaminated hydrophobic soil using surfactant and sodium hexa-metaphosphate (Na-HMP) to improve infiltration of aqueous phase remedial agents in unsaturated soil. J Soils Sediments 21:948–956
Gran-Scheuch A, Ramos-Zuñiga J, Fuentes E, Bravo D, Pérez-Donoso JM (2020) Effect of co-contamination by PAHs and heavy metals on bacterial communities of diesel contaminated soils of South Shetland Islands. Antarctica Microorganisms 8:1749
Guntupalli S, Thunuguntla VBSC, Reddy KS, Newton I, Rao CV, Bondili JS (2016) Enhanced degradation of carcinogenic PAHs benzo (a) pyrene and benzo (k) fluoranthene by a microbial consortia. Indian J Sci Technol 9:1–12
Guo J, Wen X (2021) Performance and kinetics of benzo(a)pyrene biodegradation in contaminated water and soil and improvement of soil properties by biosurfactant amendment. Ecotoxicol Environment Safe 207, 111292
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ, Human Microbiome C, Petrosino JF, Knight R, Birren BW (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21:494–504
Hale RC, La Guardia MJ, Harvey E, Chen D, Mainor TM, Luellen DR, Hundal LS (2012) Polybrominated diphenyl ethers in U.S. sewage sludges and biosolids: temporal and geographical trends and uptake by corn following land application. Environ Sci Technol 46:2055–2063
Hassanin A, Breivik K, Meijer SN, Steinnes E, Thomas GO, Jones KC (2004) PBDEs in European background soils: levels and factors controlling their distribution. Environ Sci Technol 38:738–745
Hendrickson ER, Payne JA, Young RM, Starr MG, Perry MP, Fahnestock S, Ellis DE, Ebersole RC (2002) Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe. Appl Environ Microbiol 68:485–495
Hong Y-W, Yuan D-X, Lin Q-M, Yang T-L (2008) Accumulation and biodegradation of phenanthrene and fluoranthene by the algae enriched from a mangrove aquatic ecosystem. Mar Pollut Bull 56:1400–1405
IARC (2010) Some non-heterocyclic polycyclic aromatic hydrocarbons and some related exposures: monographs on the evaluation of carcinogenic risks in humans. IARC Lyon
Jácome LAP (2019) Anaerobic biodegradation of chlorinated benzenes and hexachlorocyclohexane by mixed microbial cultures derived from contaminated field sites. Ph.D. Thesis, University of Toronto, Toronto, Canada
Kanehisa M, Furumichi M, Sato Y, Ishiguro-Watanabe M, Tanabe M (2021) KEGG: integrating viruses and cellular organisms. Nucleic Acids Res 49:D545-d551
Kim Y-M, Nam I-H, Murugesan K, Schmidt S, Crowley DE, Chang Y-S (2007) Biodegradation of diphenyl ether and transformation of selected brominated congeners by Sphingomonas sp. PH-07. Appl Microbiol Biotechnol 77:187–194
Korlević M, Zucko J, Dragić MN, Blažina M, Pustijanac E, Zeljko TV, Gacesa R, Baranasic D, Starcevic A, Diminic J, Long PF, Cullum J, Hranueli D, Orlić S (2015) Bacterial diversity of polluted surface sediments in the northern Adriatic Sea. Syst Appl Microbiol 38:189–197
Krol MJ, Perzynski A (2002) The utilization of polycyclic aromatic hydrocarbons (PAHs) as the sole carbon source in fixation of nitrogen-free by Azospirillum spp. strains of bacteria. AGRIS. Pamietnik Pulawski (poland) 131:69–80
Laue HE, Brennan KJM, Gillet V, Abdelouahab N, Coull BA, Weisskopf MG, Burris HH, Zhang W, Takser L, Baccarelli AA (2019) Associations of prenatal exposure to polybrominated diphenyl ethers and polychlorinated biphenyls with long-term gut microbiome structure: a pilot study. Environ Epidemiol 3, e039
Ławniczak Ł, Woźniak-Karczewska M, Loibner AP, Heipieper HJ, Chrzanowski Ł (2020) Microbial degradation of hydrocarbons—basic principles for bioremediation: a review. Molecules 25:856
Lee H-H (2011) Taguchi methods: principles and practices of quality design. Gau Lih Book Co., New Taipei City, Taiwan, p 514
Lee S-G, Hong S-P, Sung M-H (1996) Removal and bioconversion of phenol in wastewater by a thermostable β-tyrosinase. Enzyme Microb Technol 19:374–377
Leng Q, Mu J, Yang G (2021) Efficient anaerobic bioremediation of high-concentration benzo[a]pyrene in marine environments. Environment Pollut 284, 117210
Li N, Li J, Zhang Q, Gao S, Quan X, Liu P, Xu C (2021) Effects of endocrine disrupting chemicals in host health: three-way interactions between environmental exposure, host phenotypic responses, and gut microbiota. Environment Pollut 271, 116387
Li SR, Dou JF, Cheng LR, Ding AZ, Jiang L, Yao JJ, Du YC, Fan FQ, Zhang D (2011) Isolation and performance for two strains of benzo[a]pyrene degradation. Advanced Materials Research 233–235:1920–1923
Li Y-F, Qiao L-N, Ren N-Q, Sverko E, Mackay D, Macdonald RW (2017) Decabrominated diphenyl ethers (BDE-209) in Chinese and global air: levels, gas/particle partitioning, and long-range transport: is long-range transport of BDE-209 really governed by the movement of particles? Environ Sci Technol 51:1035–1042
Li Y, Lin T, Chen Y, Hu L, Guo Z, Zhang G (2012) Polybrominated diphenyl ethers (PBDEs) in sediments of the coastal East China Sea: occurrence, distribution and mass inventory. Environ Pollut 171:155–161
Liang L, Song X, Kong J, Shen C, Huang T, Hu Z (2014) Anaerobic biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by a facultative anaerobe Pseudomonas sp. JP1. Biodegradation 25:825–833
Liang Y, Ji M, Zhai H, Zhao J (2021) Organic matter composition, BaP biodegradation and microbial communities at sites near and far from the bioanode in a soil microbial fuel cell. Sci Total Environ 772, 144919
Liu H, Yin H, Tang S, Wei K, Peng H, Lu G, Dang Z (2019) Effects of benzo [a] pyrene (BaP) on the composting and microbial community of sewage sludge. Chemosphere 222:517–526
Liu K, Han W, Pan W-P, Riley JT (2001) Polycyclic aromatic hydrocarbon (PAH) emissions from a coal-fired pilot FBC system. J Hazard Mater 84:175–188
Liu N, Li H, Li M, Ding L, Weng C-H, Dong C-D (2017) Oxygen exposure effects on the dechlorinating activities of a trichloroethene-dechlorination microbial consortium. Biores Technol 240:98–105
Lu M, Zhang Z-Z, Wu X-J, Xu Y-X, Su X-L, Zhang M, Wang J-X (2013) Biodegradation of decabromodiphenyl ether (BDE-209) by a metal resistant strain, Bacillus cereus JP12. Biores Technol 149:8–15
Luo YR, Tian Y, Huang X, Yan CL, Hong HS, Lin GH, Zheng TL (2009) Analysis of community structure of a microbial consortium capable of degrading benzo(a)pyrene by DGGE. Mar Pollut Bull 58:1159–1163
Machín-Ramírez C, Morales D, Martínez-Morales F, Okoh A, Trejo-Hernández M (2010) Benzo [a] pyrene removal by axenic-and co-cultures of some bacterial and fungal strains. Int Biodeterior Biodegradation 64:538–544
Magoč T, Salzberg SL (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics (oxford, England) 27:2957–2963
Matturro B, Mascolo G, Rossetti S (2020) Microbiome changes and oxidative capability of an anaerobic PCB dechlorinating enrichment culture after oxygen exposure. New Biotechnol 56:96–102
McDonald TA (2002) A perspective on the potential health risks of PBDEs. Chemosphere 46:745–755
Mishra S, Singh SN (2014) Biodegradation of benzo(a)pyrene mediated by catabolic enzymes of bacteria. Int J Environ Sci Technol 11:1571–1580
Moeller DW (2011) Environmental health. Harvard University Press
Myazin VA, Korneykova MV, Chaporgina AA, Fokina NV, Vasilyeva GK (2021) The Effectiveness of biostimulation, bioaugmentation and sorption-biological treatment of soil contaminated with petroleum products in the Russian Subarctic. Microorganisms 9:1722
Nur Zaida Z, Piakong MT (2018) Bioaugmentation of petroleum hydrocarbon in contaminated soil: a review. In: Kumar V, Kumar M , Prasad R (Editors), Microbial Action on Hydrocarbons. Springer Singapore, Singapore. 415–439
Nzila A, Musa MM (2021) Current status of and future perspectives in bacterial degradation of benzo[a]pyrene. Int J Environ Res Public Health 18:262
Ohno M, Shiratori H, Park MJ, Saitoh Y, Kumon Y, Yamashita N, Hirata A, Nishida H, Ueda K, Beppu T (2000) Symbiobacterium thermophilum gen. nov., sp. nov., a symbiotic thermophile that depends on co-culture with a Bacillus strain for growth. Int J Syst Evol Microbiol 50:1829–1832
Okere U, Semple K (2012) Biodegradation of PAHs in ‘pristine’soils from different climatic regions. J Bioremed Biodegrad S 1
Paliya S, Mandpe A, Kumar MS, Kumar S (2021) Aerobic degradation of decabrominated diphenyl ether through a novel bacterium isolated from municipal waste dumping site: Identification, degradation and metabolic pathway. Bioresourc Technol 333, 125208
Qin W, Fan F, Zhu Y, Wang Y, Liu X, Ding A, Dou J (2017) Comparative proteomic analysis and characterization of benzo(a)pyrene removal by Microbacterium sp. strain M.CSW3 under denitrifying conditions. Bioprocess Biosyst Eng 40:1825–1838
Qin W, Fan F, Zhu Y, Huang X, Ding A, Liu X, Dou J (2018) Anaerobic biodegradation of benzo(a)pyrene by a novel Cellulosimicrobium cellulans CWS2 isolated from polycyclic aromatic hydrocarbon-contaminated soil. Braz J Microbiol 49:258–268
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO (2012) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41:D590–D596
Rahman F, Langford KH, Scrimshaw MD, Lester JN (2001) Polybrominated diphenyl ether (PBDE) flame retardants. Sci Total Environ 275:1–17
Rentz JA, Alvarez PJJ, Schnoor JL (2008) Benzo[a]pyrene degradation by Sphingomonas yanoikuyae JAR02. Environ Pollut 151:669–677
Ribière C, Peyret P, Parisot N, Darcha C, Déchelotte PJ, Barnich N, Peyretaillade E, Boucher D (2016) Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model. Sci Rep 6:31027
Robrock KR, Korytár P, Alvarez-Cohen L (2008) Pathways for the anaerobic microbial debromination of polybrominated diphenyl ethers. Environ Sci Technol 42:2845–2852
Song M, Luo C, Li F, Jiang L, Wang Y, Zhang D, Zhang G (2015) Anaerobic degradation of polychlorinated biphenyls (PCBs) and polychlorinated biphenyls ethers (PBDEs), and microbial community dynamics of electronic waste-contaminated soil. Sci Total Environ 502:426–433
Sowada J, Schmalenberger A, Ebner I, Luch A, Tralau T (2014) Degradation of benzo[a]pyrene by bacterial isolates from human skin. FEMS Microbiol Ecol 88:129–139
Sun S, Canning CB, Bhargava K, Sun X, Zhu W, Zhou N, Zhang Y, Zhou K (2015) Polybrominated diphenyl ethers with potent and broad spectrum antimicrobial activity from the marine sponge Dysidea. Bioorg Med Chem Lett 25:2181–2183
Terzenbach DP, Blaut M (1994) Transformation of tetrachloroethylene to trichloroethylene by homoacetogenic bacteria. FEMS Microbiol Lett 123:213–218
Tokarz Iii JA, Ahn M-Y, Leng J, Filley TR, Nies L (2008) Reductive debromination of polybrominated diphenyl ethers in anaerobic sediment and a biomimetic system. Environ Sci Technol 42:1157–1164
Tokarz JA, Ahn M-Y, Leng J, Filley TR, Nies L (2008) Reductive debromination of polybrominated diphenyl ethers in anaerobic sediment and a biomimetic system. Environ Sci Technol 42:1157–1164
Trzesicka-Mlynarz D, Ward OP (1995) Degradation of polycyclic aromatic hydrocarbons (PAHs) by a mixed culture and its component pure cultures, obtained from PAH-contaminated soil. Can J Microbiol 41:470–476
TWEPA (2016) Sediment sampling method. In: Laboratory EA (Hrsg.), NIEA S104.32B. Taiwan Envrionmental Protection Administration, Taiwan, pp. 13
TWEPA (2019) Regulated toxic chemical substances and their operation management matters, Taipei. Taiwan
US Environmental Protection Agency (2017) Technical fact sheet – polybrominated diphenyl ethers (PBDEs). US Envrionmental Protection Agency, Washington DC, USA
Wang L, Li Y, Zhang W, Niu L, Du J, Cai W, Wang J (2016) Isolation and characterization of two novel psychrotrophic decabromodiphenyl ether-degrading bacteria from river sediments. Environ Sci Pollut Res 23:10371–10381
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261–5267
Wu Z, Xie M, Li Y, Gao G, Bartlam M, Wang Y (2018) Biodegradation of decabromodiphenyl ether (BDE 209) by a newly isolated bacterium from an e-waste recycling area. AMB Express 8:27–27
Wu Z, Gao G, Wang Y (2019) Effects of soil properties, heavy metals, and PBDEs on microbial community of e-waste contaminated soil. Ecotoxicol Environ Saf 180:705–714
Xu M, Chen X, Qiu M, Zeng X, Xu J, Deng D, Sun G, Li X, Guo J (2012) Bar-coded pyrosequencing reveals the responses of PBDE-degrading microbial communities to electron donor amendments. PLoS One 7, e30439
Xu Y, Sun G-D, Jin J-H, Liu Y, Luo M, Zhong Z-P, Liu Z-P (2014) Successful bioremediation of an aged and heavily contaminated soil using a microbial/plant combination strategy. J Hazard Mater 264:430–438
Yan Z, Zhang Y, Wu H, Yang M, Zhang H, Hao Z, Jiang H (2017) Isolation and characterization of a bacterial strain Hydrogenophaga sp. PYR1 for anaerobic pyrene and benzo[a]pyrene biodegradation. RSC Adv 7:46690–46698
Yang C-W, Huang H-W, Chang B-V (2017) Microbial communities associated with anaerobic degradation of polybrominated diphenyl ethers in river sediment. J Microbiol Immunol Infect 50:32–39
Yang J-g, Liu X, Long T, Yu G, Peng S, Zheng L (2003) Influence of nonionic surfactant on the solubilization and biodegradation of phenanthrene. J Environ Sci 15:859–862
Ye D, Siddiqi MA, Maccubbin AE, Kumar S, Sikka HC (1996) Degradation of polynuclear aromatic hydrocarbons by Sphingomonas paucimobilis. Environ Sci Technol 30:136–142
Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Glöckner FO (2014) The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks. Nucleic Acids Res 42:D643–D648
Yu Y, Yin H, Peng H, Lu G, Dang Z (2019) Biodegradation of decabromodiphenyl ether (BDE-209) using a novel microbial consortium GY1: cells viability, pathway, toxicity assessment, and microbial function prediction. Sci Total Environ 668:958–965
Yu Y, Yin H, Peng H, Lu G, Dang Z (2020) Proteomic mechanism of decabromodiphenyl ether (BDE-209) biodegradation by Microbacterium Y2 and its potential in remediation of BDE-209 contaminated water-sediment system. J Hazard Mater 387:121708
Zhang D, Zhu L, Li F (2013) Influences and mechanisms of surfactants on pyrene biodegradation based on interactions of surfactant with a Klebsiella oxytoca strain. Biores Technol 142:454–461
Zhang D, Zhu L (2014) Controlling microbiological interfacial behaviors of hydrophobic organic compounds by surfactants in biodegradation process. Front Environ Sci Eng 8:305–315
Zhu Q, Wu Y, Zeng J, Zhang T, Lin X (2020) Influence of organic amendments used for benz[<i>a</i>]anthracene remediation in a farmland soil: pollutant distribution and bacterial changes. J Soils Sediments 20:32–41
Acknowledgements
The authors would like to thank Dr. Yu-Lun Kuo at BIOTOOLS Co., Ltd in Taiwan for kindly supporting the analysis of NGS data.
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This study was funded by the Research and Pilot Study Program Subsidized by Soil and Groundwater Remediation Fund administered by the Soil and Groundwater Remediation Fund Management Board under Taiwan EPA.
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Li, HH., Chang, SC. Bioremediation of decabromodiphenyl ether or benzo(a)pyrene-contaminated rice-paddy soil. J Soils Sediments 22, 1397–1417 (2022). https://doi.org/10.1007/s11368-022-03164-5
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DOI: https://doi.org/10.1007/s11368-022-03164-5