Abstract
Probiotic microorganisms are used to improve the health and wellness of people and the research on this topic is of current relevance and interest. Fifty-five yeasts, coming from honeybee’s ecosystem and belonging to Candida, Debaryomyces, Hanseniaspora, Lachancea, Metschnikowia, Meyerozyma, Starmerella and Zygosacchromyces genera and related different species, were evaluated for the probiotic traits. The resistance to gastrointestinal conditions, auto-aggregation, cell surface hydrophobicity or biofilm formation abilities as well as antimicrobial activity against common human pathogenic bacteria were evaluated. The safety analysis of strains was also carried out to exclude any possible negative effect on the consumer’s health. The influence of proteinase treatment of living yeasts and their adhesion to Caco-2 cells were also evaluated. The greatest selection occurred in the first step of survival at the acidic pH and in the presence of bile salts, where more than 50% of the strains were unable to survive. Equally discriminating was the protease test which allowed the survival of only 27 strains belonging to the species Hanseniaspora guilliermondii, Hanseniaspora uvarum, Metschnikowia pulcherrima, Metschnikowia ziziphicola, Meyerozyma caribbica, Meyerozyma guilliermondii, Pichia kluyveri, Pichia kudriavzevii and Pichia terricola. An integrated analysis of the results obtained allowed the detection of seven yeast strains with probiotic aptitudes, all belonging to the Meyerozyma genus, of which three belonging to M. guillermondii and four belonging to M. caribbica species.
Similar content being viewed by others
Introduction
The term probiotic is composed from the Latin preposition pro- and the Greek adjective “βιωτικός” (biotic) which derives from the word βίος (bios, life). This term was firstly used in 1965 by Lilly and Stillwell and is defined as viable microorganisms in sufficient amounts reach the intestine in an active state and thus exert positive health effects and well-being of the host (FAO/WHO, 2006). Many probiotic bacteria such as Lactoplanctibacillus rhamnosus GG, Lactobacillus reuteri, bifidobacteria and some strains of Lactobaci llus casei or the Lactobacillus acidophilus-group are exploited during probiotic food preparation, particularly fermented milk products (Quinto et al. 2014; Ayivi et al. 2020). In this food industry, probiotics are not intended for the treatment of diseased human beings but are thought to retain health and well-being and to reduce the long-term risk of developing diverse diseases in otherwise healthy people. Differently, in pharmaceutical products used in human and veterinary medicine, the intended use is another one, and also non-pathogenic microorganisms, e.g. certain yeast strains (Saccharomyces cerevisiae var. boulardii) or Escherichia coli strains (E. coli Nissle, 1917) are applied in prophylaxis and therapy since several decades (Czerucka et al. 2007; Ukena et al. 2007). Fungal probiotics is one of the developing fields today (Shruthi et al. 2022), and among them, yeasts represent a huge and diversified group that attracting and expanding the attention of researchers and industries. Although only limited probiotic yeasts have been verified for human or industrial use (Saccharomyces boulardii and Kluyveromyces fragilis B0399) other non-Saccharomyces, non-Kluyveromyces genera such as Pichia, Yarrowia and Meyerozyma are successfully tested (Agarbati et al. 2021; Sadeghi et al. 2022). Based on this, probiotic yeasts are becoming increasingly important both in the world of research and in the market by virtue of their potential multifactorial role for the biofortification of foods, for the biological control of pathogens and spoilage microorganisms, for the degradation of antinutrients and for the promotion and exaltation of the sensorial characteristics of the finished product.
Honeybees represent an optimal source of potential probiotic yeast for humans since their gastrointestinal tract has similar characteristics to human gastrointestinal tract: both have an internal body temperature of 37 °C, the same gastrointestinal pH value and shows the presence of proteolytic enzymes along the digestive tract.
It is well proven that the microbiota of honeybees is widely represented by a large variety of microorganisms species, most of them have a commensal role in the gastrointestinal tract. They are of fundamental importance for the maintenance of the general health of the insect and are involved in food digestion, absorption and detoxification of nutrients and antinutrients, also supporting the immune system and metabolism functions (Zheng et al. 2018). Isolated yeasts coming from a previous study (Agarbati et al. 2024) already isolated in some products of the bees' own metabolism, such as propolis, bee bread, pollen and flowers nearby the hives were also investigated. Indeed, all these products derive from metabolic processing of the insects, inside the hives, through fermentations involving lactic bacteria and yeasts.
Materials and methods
Origin of the yeast strains
Fifty-five yeasts used in this study belong to the microbial collection of the Department of Life and Environmental Sciences (DiSVA) of the Polytechnic University of Marche. These yeasts were collected during a previous isolation campaign from a honeybees (Apis mellifera subsp. ligustica) ecosystem located in Cesi (Fabriano, Ancona, Italy) as described by Agarbati et al. (2024). The ecosystem refers to bee’s products (beebread, propolis and pollen), gastrointestinal tract of honeybees and flowers (food source) into 5 km areas around the hives in question. Details regarding the origin of each yeast strain were reported in Table 1. Each strain was maintained in YPD agar medium (yeast extract 1%, peptone 2%, dextrose 2%, agar 1.8%) at 4 °C for short-term, while it was maintained in YPD broth medium, supplemented with 30% (w/v) glycerol at − 80 °C for long-term.
Probiotic potential assessment
Preparation of pre-culture
The 55 isolates were first tested for the ability to grow at body human conditions. The strains were pre-cultured on 5 mL of YPD broth medium and incubated for 48 h at 30 °C. Subcultures were carried out until the population reached 107 cell/mL. Then, pre-cultures have been washed twice with phosphate-buffered solution (PBS) pH 7 and suspended in 5 mL of PBS pH 7. Strain suspensions were used to execute the tests described below. The Saccharomyces cerevisiae var. boulardii commercial probiotic yeast (CODEX, Zambon Italia S.r.l., Bresso, Italy) was used as control strain and treated like the other strains.
Ability to grow at 37 °C and pH 2
The isolates were first tested for their ability to grow at internal body temperature and at acid pH of stomach conditions, following the procedure described by Amorim et al. (2018) with some modifications. The strain’s suspensions were inoculated at 106 cell/mL in PBS pH 2 (acidified with HCl 1 mol/L) for 4 h at 37 °C. Samples were collected after incubation time and the possible survival/growth of the yeasts was assessed through viable counts using YPD agar medium. The plates were incubated at 30 °C for 3 days before enumeration. The test was conducted in duplicate.
Tolerance to pepsin
The isolates were tested for the ability to grow at acid pH and with the presence of pepsin enzyme, following the procedure reported by Amorim et al. (2018) modified as fallowing: cell suspensions were inoculated at 106 cell/mL in PBS pH 2 (acidified with HCl 1 mol/L) and pepsin 3 g/L, incubated at 37 °C for 4 h. Then, the samples were collected, and the possible survival/growth of the yeasts was assessed through viable counts using YPD agar medium. The plates were incubated at 30 °C for 3 days before enumeration. The test was conducted in duplicate.
Tolerance to bile salts
The ability of yeasts to survive/grow in presence of bile salts was evaluated by inoculating at 106 cell/mL of cell suspension in PBS pH 7 and bile salts (Merck KGaA, Darmstadt, Germany) 0.3% (w/v) and incubated at 37 °C for 4 h (Perricone et al. 2015), following the procedure described by Amorim et al. (2018) with some modifications. The samples were collected after incubation time and viable cell counts were made to evaluate the ability of the yeasts to survive/growth in this condition. YPD agar medium was used, and the plates were incubated at 30 °C for 3 days before enumeration. The test was done in duplicate.
Auto-aggregation assay
To understand the attitude of the yeasts to form biofilm, their auto-aggregation property was evaluated. Auto-aggregation is directly linked to the ability of yeasts to adhere in the intestine mucous membranes. Standardized cell suspensions were agitated in a vortex for 10 s and the auto-aggregation was evaluated at time zero (immediately at the end of the cell shaking) and after 2, 4 and 24 h of incubation at 37 °C by absorbance (A) (OD600 nm) in a spectrophotometer. Auto-aggregation percentage was expressed as:
At represents the absorbance of the samples at 2, 4 or 24 h.
A0 is the absorbance of the samples at time zero.
Cell surface hydrophobicity
Interactions with intestinal mucosae are an equilibrium between electrostatic forces and hydrophobic interactions. Evaluation of hydrophobicity of cell surface is an indirect parameter to evaluate adhesive capabilities of yeasts and it was indirectly assessed as the ability of cells to bind to n-hexadecane, as proposed by Perricone et al. (2015) modified as follows: 1 mL of cell cultures were centrifuged at 4000 rpm for 10 min, then the supernatant was discarded and the pellet suspend in 2 mL of PBS (0.8 g/L K2HPO4; 0.68 g/L KH2PO4; 8.77 g NaCl) buffer acidified to pH 2. Samples were shaken for 5 s and left under static conditions for one hour. The ability of hexadecane to catch cells was evaluated through absorbance measurement at 600 nm after 3 h. Standardized cell suspensions were centrifuged at 4000 rpm for 5 min, washed twice with 1 mL PBS pH 7 and resuspended in 5 mL PBS pH 7. For each yeast two samples were prepared: a control (4.75 mL of cell suspension + 0.25 mL of distilled water) and an active sample (4.75 mL of cell suspension + 0.25 mL of n-hexadecane). Samples were shaken for 10 s and left under static conditions for 2 h until the separation of two phases. The upper aqueous phase was taken and the ability of n-hexadecane to catch cells was evaluated through absorbance (A) measurement at 600 nm. From the difference between the absorbance of control and active sample, the percentage of hydrophobicity was obtained as:
AB is the absorbance of the control sample and AC is the absorbance of the active sample.
Antimicrobial activity
The inhibition of human pathogenic bacteria is a fundamental trait that a probiotic should have to fight the development of them, then the ability to inhibit the growth of five pathogens was evaluated following the procedure described by Agarbati et al. (2020). E. coli, Listeria monocytogenes, Salmonella enterica, Candida albicans and Staphylococcus aureus belonging to the microbial collection of the Polytechnic University of Marche (DiSVA) were used as sensitive pathogens.
The bacteria were grown twice at 3 7 °C for 24 h in Plate Count Broth (Tryptone 5.0 g/L; Yeast Extract 2.5 g/L; Glucose 1.0 g/L); while C. albicans was grown twice in the same conditions, in YPD broth, until to reach a concentration of about 108 UFC/mL.
An aliquot (100μL) of standardized yeast suspensions were distributed onto the surface of YPD agar, the plates were incubated at 30 °C for 48 h. Afterward, a second soft layer (10 mL) of nutrient agar (beef extract 3 g/L; peptone 5 g/L; agar 15 g/L) was distributed onto the surface of YPD agar, previously inoculated with 1 mL of pathogen’s culture. The plates were incubated at 37 °C for 24 h and the presence of a clear zone shows growth inhibition and then the antimicrobial activity of yeasts against pathogens. Plates without potential probiotics were carried out as negative controls.
Adhesion to Caco-2 cells
Based on results obtained with previous studies, the eight selected yeast strains and the control strain Codex were investigated through the test for adhesion using the cell line Caco-2 derived from human colon adenocarcinoma. The cells were seeded in 24-well plates and cultivated at 37 °C in a humidified atmosphere with 5% CO2 until a confluent differentiated state was reached (monolayers), at the concentration of 4.5 × 105 CFU/mL in DMEM culture medium.
Yeast strains were cultivated in YPD broth at 30 °C for 24 h, centrifugated at 4000 rpm for 5 min and the pellet was washed twice with PBS pH 7 and resuspended in PBS pH 7, in a concentration of about 4.5 × 106 cell/mL, ten times higher than Caco-2 concentration. 1 mL of each yeast suspension was added to the Caco-2 culture in the well and incubated for 1 h at 37 °C in a 5% CO2 atmosphere. Then, the cells were gently washed with PBS to remove non-adherent yeast cells before proceeding with the lysis of Caco-2 monolayers using 100 μL of trypsin (10 min at 37 °C). The solution with released yeast cells was serially diluted and enumerated on YPD agar. The plates were incubated at 30 °C for 48 h.
The adhesion ability of the yeasts was calculated as:
Experiments were carried out in duplicate and repeated twice.
Safety analysis
Probiotic microorganisms must be GRAS for humans. In this regard, FAO/WHO supplied guidelines for safety tests on probiotic microorganisms that include hemolytic, gelatinase and DNase activities (Pereira et al. 2022).
Hemolytic activity
Hemolytic activity was evaluated through spot of yeast strains pre-culture seeded on blood agar (5% sheep blood) and incubated at 37 °C for 2–7 days. The plates are analyzed as follows: the presence of a green or clear halo around the growth indicates hemolysis positive, on the contrary the absence of halo represents negative hemolysis activity.
Gelatinase production
Pre-cultures of yeast strains were stab inoculated into gelatin-agar butts and incubated at 37 °C for 5–7 days. Upon culture growth. The tubes were placed at 4 °C for 1 h to observe, or not, liquefaction of gelatin. The liquefaction of the gelatin indicates the presence of gelatinase activity.
DNase activity
The yeast strains were straked on DNase agar medium and incubated at 37 °C for 5–7 days. Upon yeast's growth, 1 mL of HCL 1N was poured on the colonies and an eventually clear/pinkish zone around the colonies indicates positivity for DNAse production.
Genotyping characterization of yeasts by ISSR-PCR
Although all 55 yeast strains here characterized were previously identified by ITS analysis (Agarbati et al. 2024), the eight yeast strains selected through the previous tests were also subjected to genotyping characterization. DNA was extracted following the procedure described by Stringini et al. (2008): yeast cells were treated with reaction buffer (Trizma 0.1 M, pH 8.0, EDTA 50 mM, SDS 1%) containing glass beads, boiled for 10 min and placed on ice to allow cell wall disruption. Then, Tris–HCl 1 M (pH 8.0), EDTA 0.5 M (pH 8.0), SDS 10% and potassium acetate 5 M were added, and incubated on ice. Cells were centrifugated and the supernatant containing the DNA was collected, washed twice, and resuspended in Tris–EDTA buffer.
DNA was amplified by random amplified microsatellites technique inter-single sequence repeats (ISSR), using three different primers: (GTG)5, (GACA)4 and (CAG)4. The last primer had 5′-anchored degenerate sites (5′-ARRTYCAGCAGCAGCAG-3′), where R could bind A or G, and Y could bind C or T. Amplification with primers (GTG)5 and (GACA)4 was done following the procedure reported by Mahmoud et al. (2020). Briefly, the reaction was carried out in a final volume of 25 μL containing PCR buffer (including 1.5 mM MgCl2), 0.25 mM dNTPs, 0.25 mM primers, 1.25 U DreamTaq DNA polymerase (Thermo Fisher Scientific, Waltham, USA) and 25 ng genomic DNA. The PCR program was initial denaturation at 93 °C for 5 min, denaturation at 93 °C for 20 s, annealing at 55 °C for 45 s and amplification at 72 °C for 90 s (repeated 40 cycles), and a final extension at 72 °C for 6 min.
Amplification with primer (CAG)4 was done following the procedure reported by Agarbati et al. (2021). The 25 μL of reaction mix contained 1 × PCR buffer, 0.2 mM of each dNTP, 50 pmol of primer, 1.25 U DreamTaq DNA polymerase (Thermo Fisher Scientific, Waltham, USA) and 35 ng of genomic DNA. The PCR program was initial denaturation at 96 °C for 4 min, followed by 35 cycles of denaturation 95 °C for 1 min, annealing 55 °C for 1 min, elongation at 72 °C for 3 min, a final extension at 72 °C for 5 min.
All amplification products were separated by electrophoresis on 2% (w/v) agarose gels in 0.5 × TBE buffer and detected by staining with SYBR Safe DNA Gel Stain (Thermo Fisher Scientific, Waltham, USA).
Statistical analyses
Experimental data are reported as mean values ± standard deviations. Analysis of variance (ANOVA) was carried out to express significant differences through Duncan test, with associated p-values < 0.05.
Results
Ability of yeasts to survive/growth in conditions like human gastrointestinal tract
The 55 yeast strains were in vitro analyzed under similar gastro-intestinal physical–chemical conditions and all yeast strains viability were evaluated. Out of 55 strains tested, 30 strains were able to survive or grow in at least one of the three conditions tested, as reported in Table 2. Particularly, in presence of the acidic pH, 11 strains maintained approximately the same concentration of the inoculum (106 CFU/mL) after 4 h of incubation at 37 °C, comparable with that of Codex strain control. Only three strains showed an increase, reaching a concentration of Log 6.3–6.8 CFU/mL; higher growth was observed for the strain M. guilliermondii Mg100. Instead, eight strains showed a reduction of concentration of c.a. 1/1.5 Log. Seven strains decreased their concentration at values < Log 4.5 CFU/mL while a lower survival was observed for the strains S. apicola Sa173, P. kudriavzevii Pk44, H. uvarum Hu50 and M. pulcherrima Mp75. The other strains did not survive until the end of the incubation time (Table 2). Regarding the survival of the strain in presence of acidic pH and pepsin, all yeasts tested resulted better than Codex control strains that decreased until Log 4.00 cell/mL. Seven strains maintained the inoculum concentration. Strains M. pulcherrima 29 and M. guilliermondii Mp36 grew to reach Log 6.3 cell/mL. Most yeasts decrease to a concentration of Log 4.5–5.5 CFU/mL; only P. kluyveri Pk34 and P. terricola Pt158 showed a lower survival. The other strains completely dead after 4 h of incubation (Table 2). When the 55 yeasts were incubated at neutral pH in presence of bile salts, most remained about at the inoculum concentration level. Eight strains have lost about 1/1.5 Log point than the initial concentration and five strains showed a cell concentration < Log 4.5, like Codex control strain (Log 3.7 cell/mL). H. uvarum Hu50 exhibited a significantly lower survival rate.
Overall results obtained after the three tests (growth at 37 °C, at pH 2 and in presence of biliary salts) showed that the strains Mg73, Mg85, Mg100 and Mg112, belonging to M. guilliermondii, and the strains 18, 26, 58, 95 belonging to M. caribbica were able to maintain the initial cell concentration, or growth, after 4 h in conditions like human gastrointestinal tract.
Auto-aggregation and hydrophobicity properties of yeasts
Cell–cell interaction within yeasts was expressed as % of auto-aggregation after 24 h of incubation, results were reported in Fig. 1 (blue bars). All strains tested showed a high auto-aggregation percentage, up to 60%, with the only exception for M. pulcherrima Mp29 that showed the lowest auto-aggregation percentage (37%). Yeasts P. kluyveri Pk43, P. kudriavzevii Pk44, H. uvarum Hu50, S. cerevisiae Sc88, H. guilliermondii Hg91 and Hg154 showed auto-aggregation percentage ≥ 90%, comparable to that exhibited by Codex control strain (94%). The same evaluation was done also after 2 and 4 h of incubation; all yeasts tested showed a % of aggregation which increases as a function of incubation time, reaching the maximum value after 24 h (data not shown).
Results of hydrophobicity of yeast’s cell surface are reported as orange bars in Fig. 1. Only 15 of 30 yeasts tested showed surface hydrophobicity and, most of which, showed low values (below 20%) when compared with the Codex control strain (40%). M. ziziphicola Mz82 and P. terricola Pt158 stood out for their high hydrophobicity values, 64% and 58%, respectively.
Antimicrobial activity of yeasts
Based on the previous results, 20 yeasts were selected for their promising probiotic features and were then subjected to antimicrobial activity test. (Table 3). Almost all yeasts showed antimicrobial activity against E. coli and S. enteriditis, comparable with the antimicrobial activity of Codex control strain (with the exception of H. guilliermondii 91). Like Codex strain, eight out twenty yeasts exhibited total or partial antimicrobial activity against S. aureus. Instead, poor antimicrobial activity was observed against L. monocytogenes while a complete absence of activity was detected for C. albicans.
Overall, out of twenty stains tested, eight showed strong antimicrobial activity against almost three pathogens In detail, strains 18, 26, 58, 95 belonging to M. caribbica and strains 85 and 127 belonging to M. guilliermondii showed the same antimicrobial activity as Codex control strain, while M. guilliermondii Mg51 and Mg112 showed strong antimicrobial activity against L. monocytogenes. E. coli and S. enteriditis. These 8 strains were chosen for subsequent characterizations.
Adhesion to Caco-2 cells
Results regarding the ability of the selected yeasts to adhere to the human colon tumor cell line Caco-2 are reported in Fig. 2. All yeasts showed an adhesion rate of over 90%, very closely to the commercial probiotic control strain (97.3% adhesion). Less adherence, but still high, was only observed for the M. caribbica Mc58 (88.2% adhesion). Thus, all yeasts appear capable of colonizing the intestinal epithelium.
Safety analysis
The eight strains chosen as the best for probiotic properties were also analyzed if they could pose a health risk. All strains did not exhibit positive hemolytic, gelatinase and DNase activity highlighting their safety for potential probiotic applications (data not shown).
Genotyping characterization of yeasts
The 8 strains selected for the best probiotic characteristics were genotyped at strain level, using three different primers through RAPD-PCR. Four strains (18, 26, 58, 95) belong to the M. caribbica species and four (Mc51, Mc85, Mc112, Mc127) to the M. guilliermondii species. Although all strains come from different samples, at the same time, the samples are part of the same ecological niche. Thus, it was necessary to verify if the strains of the same species were clones or not. The results are shown in Table 4. The primer (CAG)4 showed the same profile for all strains indicating that it was not able to discriminate between strains, even those of different species. The primer (GACA)4 showed four different profiles within the species M. caribbica. Two profiles were observed within M. guilliermondii species: profile V for strains Mg51 and Mg85; profile VI for strains Mg112 and Mg127. The primer (GTG)5 showed three different profiles for the 8 strains analyzed, without a clear distinction between the strains belonging to the two species. Finally, the combination between the profiles of the three primers showed seven different biotypes, indicating that all the M. caribbica strains are different from M. guilliermondii strains and between them. Within M. guilliermondii species the profiles combination showed the same biotype for Mg85 and Mg51, suggesting that they are clones.
Discussion
Human gastrointestinal tract contains approximately 1014 commensal bacteria, while yeasts are a part of residual microbiota, probably underestimated at values less than 0.1% of total microbiota. Although yeasts account for only a minority part of total microbiota, considering their cell size (ten-times larger than bacteria) they represent a significant fermentative part in human metabolism (Howarth and Wang 2013).
Microbial colonization of the human gastrointestinal tract varies in function of different environmental conditions: the low pH of stomach is unsuitable for many microbes. On the contrary, some yeast species are able to survive in stomach and also in colon where the pH is higher (Gomaa 2020). Yeast are thus good candidates as probiotics because probiotics entering the gastrointestinal tract must be resistant to local stresses, such as the presence of GI enzymes, bile salts, organic acids and considerable variations of pH and temperature (Bevilacqua et al. 2019).
Another important aspect is the natural resistance of yeasts to antibiotic treatment and the absence of antibiotic resistance mechanism, since one of the main problems with the use of bacteria as probiotic is they antibiotic resistance reservoirs (Li et al. 2020).
For these reasons and based on the transversal application of yeasts on fermented food and beverages, in this work a screening among native yeasts from honeybee ecosystem was carried out, with the aim of finding probiotic strains for their possible use for food fortification. Searchers on probiotic yeasts are increased (Rai et al. 2019; Homayouni-Rad et al. 2020; Staniszewski and Kordowska-Wiater 2021). Moreover, based on the assumption that many yeasts have currently been characterized and selected for their biotechnological traits in the production of fermented foods, the possibility of researching probiotic strains to add as starters already on the market with the aim of fortifying foods and making them healthier for the consumer has become the driving aspect of research in this area (Banik et al. 2020).
Although a lot of pharmaceutical Lactic Acid Bacteria (LAB) have been used in the commercial production of probiotic formulates, the demand for new biofunctional and not-dairy or vegan foods is constantly growing (Craig and Brothers 2021) and the exploration of novel probiotic strains for healthy increase has intensified in response to market demand (Min et al. 2019).
In this work, isolated yeasts from honeybees, their products and agro-environment were evaluated for the probiotic potential. The idea to opt for this ecosystem as a source of isolation of new yeast strains with probiotic traits comes from no o low-anthropized and represents a source of unexplored and native strains. Indeed, although yeasts have been isolated from a plethora of terrestrial and aquatic habitats in the past years, the isolation of indigenous yeasts inhabiting rare, specialized or unexplored niches like insect gut, flowers or not anthropogenic habitats represent potential reservoirs of yeasts with suitable biotechnological traits (Avchar et al. 2022). Then, the possibility of finding the same species both in the GI tract, in the agro-environment and in fermented products led to the assumption of a high adaptability of these yeast strains to various abiotic conditions (Segal-Kischinevzky et al. 2022).
Among yeasts here characterized, as expected, out of 55 yeasts tested, only 24 strains were able to at least survive the restrictive conditions of the human GI. Among these 24 strains only 8 yeasts were able to counteract the development of at least three human pathogens tested (L. monocytogenes, E coli, S. aureus, S. enteritidis and C. albicans). All these strains, belonging to the species M. caribbica and M. guilliermondii showed a high adherence to Caco-2 cells and all of them were safety for human health. In this regard,most of the published works focus on the evaluation of survival under GI conditions, as well as its possible mechanisms of action which exert health-promoting effects, but little is known about their safety (Hazards (BIOHAZ) et al. 2016). Although most fermentative yeast species are not considered as pathogenic in healthy individuals, the safety test, following the OMS procedure, all of the selected 8 strains showed safety traits (Fernández-Pacheco et al. 2021).
Some yeast genera and species used in this work have already been studied by other authors to evaluate the same probiotic traits, however comparing our results with those previously published, a strain specific probiotic feature was revealed.
For example, Muche et al. (2023) screened ten sourdough samples from Ethiopia where five yeasts belonging to S. cerevisiae, P. kudriavzevii and Candida humilis resulted probiotic. Still, out of 54 yeast strains characterized by Gürkan Özlü et al. (2022), 15 strains survived low pH, bile salt, temperature, acids and salt concentrations. The strains belonged to Kluyveromyces, Pichia, Candida, Debaryomyces and Wickerhamomyces genera. The yeast strains also exhibited antagonistic activity, particularly W. anomalus and P. kudriavzevii against E.coli O157:H7 RSSK 234 and L. monocytogenes ATCC 19115. Differently, C. friedrichii Cf65 and D. hansenii Dh24, Dh161, Dh83, Dh25 strains couldn't resist under conditions similar to the human gastrointestinal tract. P. kudriavzevii Pk44 here characterized, did not show all probiotic traits tested, first of all a progressive death rate was observed during the 4 h of incubation at 37 °C and pH 2.0.
The only 8 yeast strains of M. guilliermondii and M. caribbica here characterized as probiotic were never proposed for this feature, until now. M. guilliermondii is a complex that includes multiple species, such as M. guilliermondii (formerly Candida guilliermondii and Pichia guilliermondii), M. caribbica (formerly Pichia caribbica, Candida athensensis, Candida carpophila, Candida elateridarum, Candida neustonensis, and Candida smithsonii) (De Marco et al. 2018). M. guilliermondii and M. caribbica are sporogenous yeasts that are commonly isolated from the environment, human skin, and mucosa (Papon et al. 2013). M. guilliermondii has been used for different biotechnological applications, including the industrial production of enzymes and metabolites, and shows a wide substrate spectrum, as well as the ability to synthesize numerous chemicals (Yan et al. 2021). For these reasons, M. guilliermondii has been thoroughly studied to produce ethanol from straw and other waste materials (Liu et al. 2014), and for the degradation of plastics (Lou et al. 2022).
In addition, M. guilliermondii and M. caribbica have also been used for agricultural applications such as managing plant pathogens. Both species have been reported as promising sources of antifungal agents mainly due to the production of volatile organic compounds (VOCs) and hydrolytic enzymes (Herrera-Balandrano et al. 2023), and several studies have confirmed their ability to compete for space and nutrients with plant pathogens (Agirman and Erten 2020).
On the other hand, M. guilliermondii and M. caribbica have never been used for potential probiotic purpose and results here obtained could be promising for further characterization of these strains with the final goal to consider them as multifactorial, biotechnological, fermenter and probiotic yeasts.
Data availability
The authors confirm that all relevant data are included in this article.
References
Agarbati A, Canonico L, Marini E et al (2020) Potential probiotic yeasts sourced from natural environmental and spontaneous processed foods. Foods 9:287. https://doi.org/10.3390/foods9030287
Agarbati A, Marini E, Galli E et al (2021) Characterization of wild yeasts isolated from artisan dairies in the Marche region, Italy, for selection of promising functional starters. LWT 139:110531. https://doi.org/10.1016/j.lwt.2020.110531
Agarbati A, Gattucci S, Canonico L et al (2024) Yeast communities related to honeybees: occurrence and distribution in flowers, gut mycobiota, and bee products. Appl Microbiol Biotechnol 108:175. https://doi.org/10.1007/s00253-023-12942-1
Agirman B, Erten H (2020) Biocontrol ability and action mechanisms of Aureobasidium pullulans GE17 and Meyerozyma guilliermondii KL3 against Penicillium digitatum DSM2750 and Penicillium expansum DSM62841 causing postharvest diseases. Yeast 37:437–448. https://doi.org/10.1002/yea.3501
Amorim JC, Piccoli RH, Duarte WF (2018) Probiotic potential of yeasts isolated from pineapple and their use in the elaboration of potentially functional fermented beverages. Food Res Int 107:518–527. https://doi.org/10.1016/j.foodres.2018.02.054
Avchar R, Tiwari S, Baghela A (2022) Yeast isolation methods from specialized habitats. In: Gupta VK, Tuohy M (eds) Laboratory protocols in fungal biology: current methods in fungal biology. Springer, Cham, pp 235–254
Ayivi RD, Gyawali R, Krastanov A et al (2020) Lactic acid bacteria: food safety and human health applications. Dairy 1:202–232. https://doi.org/10.3390/dairy1030015
Banik A, Ghosh K, Pal S et al (2020) Biofortification of multi-grain substrates by probiotic yeast. Food Biotechnol 34:283–305. https://doi.org/10.1080/08905436.2020.1833913
Bevilacqua A, Speranza B, Santillo A et al (2019) Alginate-microencapsulation of Lactobacillus casei and Bifidobacterium bifidum: performances of encapsulated microorganisms and bead-validation in lamb rennet. LWT 113:108349. https://doi.org/10.1016/j.lwt.2019.108349
Craig WJ, Brothers CJ (2021) Nutritional content and health profile of non-dairy plant-based yogurt alternatives. Nutrients 13:4069. https://doi.org/10.3390/nu13114069
Czerucka D, Piche T, Rampal P (2007) Review article: yeast as probiotics—Saccharomyces boulardii. Aliment Pharmacol Ther 26:767–778. https://doi.org/10.1111/j.1365-2036.2007.03442.x
De Marco L, Epis S, Capone A et al (2018) The genomes of four Meyerozyma caribbica isolates and novel insights into the Meyerozyma guilliermondii species complex. G3 8:755–759. https://doi.org/10.1534/g3.117.300316
FAO W (2006) Probiotics in food: Health and nutritional properties and guidelines for evaluation. FAO Food Nutr Pap 85:2
Fernández-Pacheco P, Ramos Monge IM, Fernández-González M, Poveda Colado JM, Arévalo-Villena M (2021) Safety evaluation of yeasts with probiotic potential. Frontiers in Nutrition 8:659328
Gomaa EZ (2020) Human gut microbiota/microbiome in health and diseases: a review. Antonie Van Leeuwenhoek 113:2019–2040. https://doi.org/10.1007/s10482-020-01474-7
Gürkan Özlü B, Terzi Y, Uyar E et al (2022) Characterization and determination of the potential probiotic yeasts isolated from dairy products. Biologia 77:1471–1480. https://doi.org/10.1007/s11756-022-01032-8
Hazards (BIOHAZ) EP on B, Allende A, Bolton D et al (2016) Update of the list of QPS recommended biological agents intentionally added to food or feed as notified to EFSA 4: suitability of taxonomic units notified to EFSA until March 2016. EFSA J 14:4522
Herrera-Balandrano DD, Wang S-Y, Wang C-X et al (2023) Antagonistic mechanisms of yeasts Meyerozyma guilliermondii and M. caribbica for the control of plant pathogens: a review. Biol Control 186:105333. https://doi.org/10.1016/j.biocontrol.2023.105333
Homayouni-Rad A, Azizi A, Oroojzadeh P, Pourjafar H (2020) Kluyveromyces marxianus as a probiotic yeast: a mini-review. Curr Nutr Food Sci 16:1163–1169. https://doi.org/10.2174/1573401316666200217113230
Howarth GS, Wang H (2013) Role of endogenous microbiota, probiotics and their biological products in human health. Nutrients 5:58–81. https://doi.org/10.3390/nu5010058
Li T, Teng D, Mao R et al (2020) A critical review of antibiotic resistance in probiotic bacteria. Food Res Int 136:109571. https://doi.org/10.1016/j.foodres.2020.109571
Liu G-L, Fu G-Y, Chi Z, Chi Z-M (2014) Enhanced expression of the codon-optimized exo-inulinase gene from the yeast Meyerozyma guilliermondii in Saccharomyces sp. W0 and bioethanol production from inulin. Appl Microbiol Biotechnol 98:9129–9138. https://doi.org/10.1007/s00253-014-6079-7
Lou H, Fu R, Long T et al (2022) Biodegradation of polyethylene by Meyerozyma guilliermondii and Serratia marcescens isolated from the gut of waxworms (larvae of Plodia interpunctella). Sci Total Environ 853:158604. https://doi.org/10.1016/j.scitotenv.2022.158604
Mahmoud AH, Farah MA, Rady A et al (2020) Utilization of microsatellite markers in genotyping of Saudi Arabian camels for productivity and conservation. Can J Anim Sci 100:253–261. https://doi.org/10.1139/cjas-2018-0170
Min M, Bunt CR, Mason SL, Hussain MA (2019) Non-dairy probiotic food products: an emerging group of functional foods. Crit Rev Food Sci Nutr 59:2626–2641. https://doi.org/10.1080/10408398.2018.1462760
Muche N, Geremew T, Jiru TM (2023) Isolation and characterization of potential probiotic yeasts from Ethiopian Injera sourdough. 3Biotech 13:300. https://doi.org/10.1007/s13205-023-03729-2
Papon N, Savini V, Lanoue A et al (2013) Candida guilliermondii: biotechnological applications, perspectives for biological control, emerging clinical importance and recent advances in genetics. Curr Genet 59:73–90. https://doi.org/10.1007/s00294-013-0391-0
Pereira WA, Mendonça CMN, Urquiza AV et al (2022) Use of probiotic bacteria and bacteriocins as an alternative to antibiotics in aquaculture. Microorganisms 10:1705. https://doi.org/10.3390/microorganisms10091705
Perricone M, Bevilacqua A, Altieri C et al (2015) Challenges for the production of probiotic fruit juices. Beverages 1:95–103. https://doi.org/10.3390/beverages1020095
Quinto EJ, Jiménez P, Caro I et al (2014) Probiotic lactic acid bacteria: a review. Food Nutr Sci 05:1765. https://doi.org/10.4236/fns.2014.518190
Rai AK, Pandey A, Sahoo D (2019) Biotechnological potential of yeasts in functional food industry. Trends Food Sci Technol 83:129–137. https://doi.org/10.1016/j.tifs.2018.11.016
Sadeghi A, Ebrahimi M, Shahryari S et al (2022) Food applications of probiotic yeasts; focusing on their techno-functional, postbiotic and protective capabilities. Trends Food Sci Technol 128:278–295. https://doi.org/10.1016/j.tifs.2022.08.018
Segal-Kischinevzky C, Romero-Aguilar L, Alcaraz LD et al (2022) Yeasts inhabiting extreme environments and their biotechnological applications. Microorganisms 10:794. https://doi.org/10.3390/microorganisms10040794
Shruthi B, Deepa N, Somashekaraiah R et al (2022) Exploring biotechnological and functional characteristics of probiotic yeasts: a review. Biotechnol Rep 34:e00716. https://doi.org/10.1016/j.btre.2022.e00716
Staniszewski A, Kordowska-Wiater M (2021) Probiotic and potentially probiotic yeasts—characteristics and food application. Foods 10:1306. https://doi.org/10.3390/foods10061306
Stringini M, Comitini F, Taccari M, Ciani M (2008) Yeast diversity in crop-growing environments in Cameroon. Int J Food Microbiol 127(1–2):184–189
Ukena SN, Singh A, Dringenberg U et al (2007) Probiotic Escherichia coli Nissle 1917 inhibits leaky gut by enhancing mucosal integrity. PLoS ONE 2:e1308. https://doi.org/10.1371/journal.pone.0001308
Yan W, Gao H, Qian X et al (2021) Biotechnological applications of the non-conventional yeast Meyerozyma guilliermondii. Biotechnol Adv 46:107674. https://doi.org/10.1016/j.biotechadv.2020.107674
Zheng H, Steele MI, Leonard SP et al (2018) Honey bees as models for gut microbiota research. Lab Anim 47:317–325. https://doi.org/10.1038/s41684-018-0173-x
Funding
Open access funding provided by Università Politecnica delle Marche within the CRUI-CARE Agreement. The authors have not disclosed any funding.
Author information
Authors and Affiliations
Contributions
Alice Agarbati, Laura Moretti, Laura Canonico, Francesca Comitini, Maurizio Ciani, contributed equally to the manuscript. All the authors participated in the design and discussion of the research. Alice Agarbati and Laura Moretti carried out the experimental part of the work. Alice Agarbati and Laura Moretti carried out the analysis of the data. All authors have read and agreed to the published version of the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
About this article
Cite this article
Agarbati, A., Moretti, L., Canonico, L. et al. Agro-ecosystem of honeybees as source for native probiotic yeasts. World J Microbiol Biotechnol 40, 147 (2024). https://doi.org/10.1007/s11274-024-03941-z
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s11274-024-03941-z