Abstract
Purpose
Multiple factors, such as dietary patterns, pharmaceutical interventions, and exposure to harmful substances, possess the capacity to influence gut microbiota composition. Gut microbiota dysbiosis has emerged as a significant contributor to the progression of chronic kidney disease (CKD) and its associated complications. By comprehending the intricacies of the intestinal microbiota, this research endeavor holds the potential to offer novel perspectives on potential strategies for mitigating CKD progression.
Methods
In this retrospective analysis, we assessed gut microbiota composition in CKD patients. Fecal samples were collected from a cohort of 44 patients with stage 3–4 CKD, alongside a control group consisting of 132 healthy volunteers. Subsequently, 16 s rDNA sequencing was conducted to examine the composition of the gut microbiota.
Results
Our findings revealed significant alterations in the diversity of intestinal microbiota in fecal samples between patients with stage 3–4 CKD and healthy subjects. Among the 475 bacterial genera, 164 were shared, while 242 dominant genera were exclusive to healthy subjects and 69 to CKD stages 3–4 samples. Notably, healthy volunteers exhibited a prevalence of intestinal Firmicutes and Bacteroidetes, whereas stage 3–4 CKD patients displayed higher abundance of Proteobacteria and Actinobacteria. The presence of uncultured Coprobacillus sp. notably contributed to distinguishing between the two groups. ROC curve analysis identified distinct microbiota with superior diagnostic efficacy for discriminating stage 3–4 CKD patients from healthy individuals. Metabolic pathway analysis revealed differing dominant pathways between the two groups—the NADH dehydrogenase pathway in healthy individuals and the phosphate acetyltransferase pathway in stage 3–4 CKD patients. Moreover, the CKD cohort displayed a higher proportion of Gram-negative bacteria and facultative anaerobes.
Conclusions
In conclusion, our study underscores the profound influence of gut microbiota dysbiosis on CKD progression. The distinct microbial profiles observed in CKD patients highlight the potential efficacy of microbiota-based interventions in mitigating CKD advancement.
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Data availability
All data presented in this study are available from the corresponding author upon reasonable request.
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Funding
This work was supported by Youth Natural Science Foundation of Jiangxi Province (Grant No. 20171BAB215011), Foundation of Zhaoyang Talent Plan of Shanghai East Hospital (Grant No. DFZY-6) and Youth Research Development Foundation of The First Affiliated Hospital of Xiamen University (XYY2017021).
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HT, JX, ML, XY, and SC: conceptualization, methodology, supervision, and revision. XY, and SC: original draft preparation. XY, SC, JG, JZ, ML, RC, LZ, PB, BL, and MZ: investigation and visualization. All the authors contributed to the article and approved the submitted version.
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The study was conducted in accordance with the Declaration of Helsinki, and approved by the Ethics Committee of First Affiliated Hospital of Xiamen University.
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Supplementary file1 Supplementary Figure. 1 Relative abundance of gut microbiota in patients with stage 3-4 CKD and healthy controls at class, order, family and genus levels (JPG 945 kb)
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Yang, X., Cai, S., Gong, J. et al. Characterization of gut microbiota in patients with stage 3–4 chronic kidney disease: a retrospective cohort study. Int Urol Nephrol 56, 1751–1762 (2024). https://doi.org/10.1007/s11255-023-03893-7
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DOI: https://doi.org/10.1007/s11255-023-03893-7