Abstract
Results of structural and thermochemical calculations involving boronic acid, HB(OH)2, and the corresponding ethylene glycol ester, HB(-O-CH2-CH2-O-), in the presence of explicit NH3 and/or H2O molecules are reported. Calculations were performed in a polarizable continuum model (PCM) water solution and in the gas phase using density functional theory (DFT) and second-order Moller-Plesset perturbation theory (MP2) with the Dunning-Woon aug-cc-pVTZ basis set. Different classes of local minima on the HB(OH)2·NH3·H2O and HB(-O-CH2-CH2-O-)·NH3·H2O potential energy surfaces (PESs) in PCM water solution have been identified: (1) structures with a N→B dative bond, [H3N→BH(OH)2]·H2O, and [H3N→B(H)(-O-CH2-CH2-O-)]·H2O, where the H2O is involved in hydrogen bonding; (2) water-inserted structures involving either a novel O→B dative bond, H3N·H(H)O→BH(OH)2, and H3N···H(H)O→B(H)(-O-CH2-CH2-O-) where the H2O molecule remains essentially intact or lower-energy zwitterionic arrangements in which a water H atom has been transferred to the ammonia, [H4N]+[HO-BH(OH)2]−, and [H4N]+[BH(OH)(-OCH2-CH2-O-)]−; (3) structures where both the NH3 and H2O molecules are exclusively involved in hydrogen bonding. In these simple model systems, arrangements with N→B dative bonds, and some structures with only O···H and N···H hydrogen bonds, are ca. 5–6 kcal/mol lower in energy than either of the corresponding water-inserted structures.
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References
Jin S, Cheng Y, Reid S, Li M, Wang B (2010) Carbohydrate recognition by boronolectins, small molecules, and lectins. Med Res Rev 30:171–257
Yang W, Gao S, Gao X, Karnati VV, Ni W, Wang B, Hooks WB, Carson J, Weston B (2002) Diboronic acids as fluorescent probes for cells expressing Sialyl Lewis X. Bioorg Med Chem Lett 12:2175–2177
Murrey HE, Hsieh-Wilson LC (2008) Chemical neurobiology of carbohydrates. Chem Rev 108:1708–1731
Sun X, Zhai W, Fossey JS, James TD (2016). Boronic acids for fluorescence imaging of carbohydrates. Chem Commun 52:3456–3469
James TD, Sandanayake KRAS, Nakashima K, Shinkai S (1994) A glucose-selective molecular fluorencence sensor. Chem Commun 1621–1622
James TD, Sandanayake KRAS, Shinkai S (1995) Chiral discrimination of monosaccharides usin a fluorescent molecular sensor. Nature 374:345–347
Ni W, Kaur G, Springsteen G, Wang B, Franzen S (2004) Regulating the fluorescence intensity of an anthracene boronic acid system: a B-N bond or a hydrolysis mechanism? Bioorg Chem 32:571–581
Chapin BM, Metola P, Vankayala SL, Woodcock HL, Mooibroek TJ, Lynch VM, Larkin JD, Anslyn EV (2017) Disaggregation is a mechanism for emission turn-on of ortho-aminomethylphenylboronic acid-based saccharide sensors. J Am Chem Soc 139:5568
Sun X, James TD, Anslyn EV (2018) Arresting “loose bolt” internal conversion from −B(OH)2 groups is the mechanism for emission turn-on in ortho-aminomethylphenylboronic acid-based saccharide sensors. J Am Chem Soc 140:2348–2354
Sun X, Chapin BM, Metola P, Collins B, Wang B, James TD, Anslyn EV (2019) The mechanisms of boronate ester formation and fluorescent turn-on in ortho-aminomethylphenylboronic acids. Nat Chem 11:768–778
Ernzerhof M, Perdew JP (1998) Generalized gradient approximation to the angle- and system-averaged exchange hole. J Chem Phys 108:3313–3320
Perdew JP, Burke K, Ernzerhof M (1996) Generalized gradient approximation made simple. Phys Rev Lett 77:3865–3868
Perdew JP, Burke K, Ernzerhof M (1997) Errata: generalized gradient approximation made simple. Phys Rev Lett 1396
Dunning Jr TH (1989) Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen. J Chem Phys 90:1007–1023
Kendall RA, Dunning Jr TH, Harrison RJ (1992) Electron affinities of the first-row atoms revisited. Systematic basis sets and wave functions. J Chem Phys 96:6796–6806
Peterson KA, Woon DE, Dunning Jr TH (1994) Benchmark calculations with correlated molecular wave functions. IV. The classical barrier height of the H + H2→ H2 + H reaction. J Chem Phys 100:7410–7415
Woon DE, Dunning Jr TH (1993) Gaussian basis sets for use in correlated molecular calculations. III The atoms aluminum through argon. J Chem Phys 98:1358–1371
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR al., e. Gaussian 09 Revision D.01
Tomasi J, Mennucci B, Cammi T (2005) Quantum mechanical continuum solvation models. Chem Rev 105(8):2999–3094
Grimme S, Antony J, Erlich S, Krieg H (2010) A consistent and accurate ab initio parameterization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. J Chem Phys 132:154104
Grimme S, Ehrlich S, Goerigk L (2011) Effect of damping function in dispersion corrected density functional theory. J Comput Chem 32(7):1456–1465
Frisch MJ, Head-Gordon M, Pople JA (1990) A direct MP2 gradient method. Chem Phys Lett 166:275–280
Head-Gordon M, Pople JA, Frisch MJ (1988) MP2 energy evaluation by direct methods. Phys Lett 153:503–506
Moller C, Plesset MS (1934) Note on the approximation treatment for many-electron systems. Phys Rev 46:0618–0622
Rao NZ, Larkin JD, Bock CW (2016) A comparison of the structure and bonding in the aliphatic boronic R-B(OH)2 and borinic R-BH(OH) acids (R=H, NH2, OH, and F): a computational investigation. Struct Chem 27:1081–1091
Buhl M, Steinke T, Schleyer P v R, Boese R (1991) Solvation effects on geometry and chemical shifts. An ab initio study. Angew Chem Int Ed Eng 30:1160
Hopfl H (1999) The tetrahedral character of the boron atom newly defined - a useful tool to evaluate the N-->B bond. J Organomet Chem 581:129–149
Jiao H, Schleyer P (1994) Large effects of medium on geometries. An ab Initio Study. v. R. J Am Chem Soc 116:7429
Larkin JD, Bock CW (2018) A comparison of the structure and bonding in the donor-acceptor complexes H3N→BR(OH)2 and H3N→BRH(OH) (R = H; NH2, OH, and F): a computational investigation. Struct Chem 30:361–368
Larkin JD, Fossey JS, James TD, Brooks BR, Bock CW (2010) A comparison of the structure and bonding in the donor-acceptor complexes H3N→BR(OH)2 and H3N→BRH(OH) (R = H; NH2, OH, and F): a computational investigation. J Phys Chem A 114:12531
Collins BE, Sorey S, Hargrove AE, Shabbir SH, Lynch VM, Anslyn EV (2009) Probing intramolecular B-N interactions in ortho-aminomethyl arylboronic acids. J Organomet Chem 11:4055–4060
Zhu L, Shabbir SH, Gray M, Lynch VM, Sorey S, Anslyn EV (2006) A structural investigation of the N-B interaction in an o-(N,N-dialkylaminomethyl)arylboronate system. J Am Chem Soc 128:1222–1232
Franzen S, Ni W, Wang B (2003) Study of the mechanism of electron-transfer quenching by boron−nitrogen adducts in fluorescent sensors. J Phys Chem B 107:12942–12948
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Markham, G.D., Larkin, J.D. & Bock, C.W. Models for boronic acid receptors: a computational structural, bonding, and thermochemical investigation of the HB(OH)2∙H2O∙NH3 and HB(-O-CH2-CH2-O-)∙NH3∙H2O potential energy surfaces. Struct Chem 32, 607–621 (2021). https://doi.org/10.1007/s11224-020-01701-x
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DOI: https://doi.org/10.1007/s11224-020-01701-x