Abstract
This article presents a combined experimental and computational study of [Cu(tppz)(SCN)2], where ttpz stands for 2,3,5,6-tetra-(2-pyridyl)pyrazine. The compound has been studied by IR, UV–Vis spectroscopy, and single crystal X-ray analysis. The geometry around copper atom may be described as a distorted square pyramid. The equatorial plane is defined by three nitrogen atoms of tppz and one nitrogen atom of thiocyanate group. The apical site is occupied by nitrogen atom of the second SCN− ion. The electronic spectrum of [Cu(tppz)(SCN)2] was analyzed, and bands were assigned through the DFT/TDDFT procedures.
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Introduction
The pseudohalide ions (N3 −, NCS−, NCO−, and N(NC) −2 ) are versatile ligands that can bind transition metal ions in a variety of ways. They can act as monodentate ligands and as bridging ligands leading to the formation of mononuclear and polynuclear species with different dimensionality and nuclearity. Among these, the azide- and thiocyanate-containing metal complexes are considered to be the most investigated systems because of their diverse structures and applications in magnetic materials [1–7]. It has been widely reported that the EO bridging mode generally mediates ferromagnetic coupling, while the EE does antiferromagnetic coupling. Furthermore, EE and EO bridging modes may simultaneously exist in the same species, leading to different topologies and materials with unprecedented, magnetic behavior [8–10]. The thiocyanate ions behave with similar versatility of the azide ones, but they seem to be less efficiently as transmitters of magnetic interaction [8–10]. However, in contrast to the vast chemistry of azido-bridged complexes, number of structurally and magnetically characterized thiocyanato-bridged is significantly smaller. To permit detailed magneto-structural correlations, further studies are needed for thiocyanato-bridged compounds.
Azide- and thiocyanate ions are frequently used in combination with polydentated organic ligands for the preparation of coordination compounds of various dimensionalities [3, 11–15]. 2,3,5,6-Tetra-(2-pyridyl)pyrazine (tppz), originally synthesized by Goodwin and Lions in 1959 [16], belongs to such ligands. It has six potential donor sites and is able to act as a bidentate, tridentate, bis-bidentate, tris-bidentate, and bis-tridentate, forming both mono- and polynuclear complexes [17–20]. Previous studies focused on the complex formation between tppz and pseudohalide ligands, and first-row transition metal ions showed that the nuclearity of the product strongly depends on the central ion, choice of anions, and the reaction conditions. It has been also established that tppz exhibits a remarkable efficiency to mediate magnetic interactions between paramagnetic centers separated by more than 6.4 Å. The largest antiferromagnetic interaction between copper(II) ions has been found in the dinuclear complexes [Cu2(tppz)(H2O)4](ClO4)4·2H2O (J = −61.1 cm−1) and [Ni2(tppz)(H2O)6](NO3)4·2.5H2O (J = −76 cm−1) [21, 22]. Interestingly, the ability of tppz to mediate magnetic interactions between paramagnetic centers is much stronger than the related pyrazine molecule in its metal complexes where negligible or weak antiferromagnetic interactions were observed (J values ranging from −7.4 to 0 cm−1) [20].
So far, several copper(II) complexes incorporating halide and pseudohalide ions and tppz ligand have been obtained and characterized. Among them are mononuclear [Cu(tppz)Cl2], [Cu(tppz)(N3)2].0.33H2O, [Cu(tppz)(NCO)2].0.4H2O, dinuclear [{CuCl}2(μ-tppz)][PF6]2, [Cu2(tppz)(dca)3(H2O)].dca.3H2O, [Cu2(μ-tppz)Cl4].5H2O, [Cu2(μ-tppz)Br4] as well as one-dimensional {[Cu2(tppz)(tcm)4]3/2H2O} n and two-dimensional {[Cu2(tppz)(N3)2][Cu2(N3)6]} n , [Cu5(tppz)(N3)10] n structures [20, 23–25].
Surprisingly, studies on thiocyanate copper(II) complexes of tppz ligand have not been performed. Here, we present the synthesis, spectroscopic data, crystal, molecular and electronic structure of [Cu(tppz)(SCN)2]. To get a detailed insight into the electronic structure and spectroscopic properties of [Cu(tppz)(SCN)2], we performed density functional theory (DFT) and time-dependent DFT (TD-DFT) calculations. Currently, DFT method is commonly used to examine transition metal complexes. It meets with the requirements of being accurate, easy to use and fast enough to allow the study of relatively large molecules of transition metal complexes [26].
Experimental
General procedure
The reagents used to the synthesis were commercially available and were used without further purification. IR spectrum was recorded on a Nicolet Magna 560 spectrophotometer in the spectral range 4000–400 cm−1 with the samples in the form of KBr pellets. Electronic spectrum was measured on a spectrophotometer Lab Alliance UV–VIS 8500 in the range 1000–180 nm in methanol solution.
Preparation of [Cu(tppz)(SCN)2]
NH4SCN (0.092 g, 1.2 mmol) was dissolved in water (10 ml) and slowly added to the methanolic solution (15 ml) of CuCl2·2H2O (0.1 g; 0.59 mmol) and 2,3,5,6-tetra-(2-pyridyl)pyrazine (0.59 mmol, 0.23 g) and stirred at room temperature for 6 h. The resulting solution was kept for evaporation at room temperature, and after a few days green crystals of [Cu(tppz)(SCN)2] were obtained, filtered off, and dried. Yield 70 %.
IR (KBr; ν/cm−1): 2069 (vs) and 2046(vs) ν(C = NSCN); 1650(w), 1600(m), 1568(w), and 1524 (s) ν(C = Ntppz) and ν(C = Ctppz).
X-ray diffraction studies
The X-ray intensity data of [Cu(tppz)(SCN)2] were collected on an Gemini A Ultra Oxford Diffraction four-circle kappa geometry diffractometer with Atlas CCD detector graphite monochromated Mo K α radiation (λ = 0.71073 Å) at 293(2) K. The unit cell determination and data integration were carried out using the CrysAlis package of Oxford Diffraction [19]. Intensity data were corrected for the Lorentz and polarization effects. The absorption correction was introduced by SCALE3 ABSPACK scaling algorithm [27]. The structure was solved by direct methods using SHELXS-97 and refined by full matrix least-squares on F 2o with SHELXL-97 with anisotropic displacement parameters for non-hydrogen atoms [28, 29]. All H atoms were introduced in calculated positions with the isotropic displacement parameters fixed at 1.2 times the value of equivalent temperature factor of the parent carbon atoms. Crystal data collection and refinement parameters are given in Table 1.
Computational details
All computations herein were performed by using GAUSSIAN-03 program package using hybrid DFT-B3LYP functional [30]. The calculations were carried out using the standard 6-311+G(d,p) basis for Cu atom, 6-31+G** basis for nitrogen, 6-31G* for carbon, and 6-31G for hydrogen atoms. The geometry of [Cu(tppz)(SCN)2] was optimized without any symmetry restrictions in the doublet state in gas phase and using PCM (polarizable continuum model) approach. The optimized geometry of [Cu(tppz)(SCN)2] was verified by performing a frequency calculation. The vibrations in the calculated vibrational spectrum were real, thus the optimized geometry of [Cu(tppz)(SCN)2] corresponds to true energy minimum.
The electronic spectrum of [Cu(tppz)(SCN)2] was calculated with the TDDFT method starting from the experimental X-ray data. The solvent (methanol) effect was simulated using the polarizable continuum model with the integral equation formalism (IEF-PCM) [31, 32].
Results and discussion
The [Cu(tppz)(SCN)2] complex has been obtained in the reaction of the copper(II) chloride with 2,3,5,6-tetra-(2-pyridyl)pyrazine (tppz) and ammonium thiocyanate.
The IR spectrum of [Cu(tppz)(SCN)2] clearly shows the presence of the thiocyanato groups. The maxima of νCN strong absorptions occur at 2069 and 2046 cm−1, and their location is in good agreement with the end-on NCS coordination. The characteristic bands of the C=C and C=N stretching modes of 2,3,5,6-tetra-(2-pyridyl)pyrazine are observed in the range 1650–1520 cm−1 [33].
The calculated (non-scaled) vibrational spectrum of [Cu(tppz)(SCN)2] stays in good agreement with experimental data, as shown in Fig. 1. The calculated νCN strong absorptions occur at 2119.4 and 2099.7 cm−1. These values are higher than the experimental ones by ~3 %, which is a usual feature for this approach. Similarly, the calculated absorptions due to ν(C=N), ν(C=C) modes of the tppz, appearing at 1650–1510 cm−1, fall in the experimental range.
Crystal structure
The crystallographic data of [Cu(tppz)(SCN)2] are summarized in Table 1. The complex crystallises in the orthorhombic space group Pna21 and its structure consists of discrete and well-separated monomers [Cu(tppz)(SCN)2]. The intra- and intermolecular contacts [20, 22] detected in the structure are collected in Table 2. The structure is stabilized by some C–H···N and C–H···S short contacts classified as weak hydrogen bonds. The classical hydrogen bonds cannot be found [34, 35].
The molecular structure of [Cu(tppz)(SCN)2] is presented in Fig. 2, and the selected bond distances and angles are collected in Table 3.
The copper(II) is five-coordinate by three N atoms of tppz ligand and two atoms of thiocyanate ions. The metal coordination geometry can be described as a distorted square pyramid.
The copper(II) ion displays a distorted square pyramidal environment (4 + 1 coordination). Three tppz nitrogen atoms [Cu(1)–N(1) 1.946(2), Cu(1)–N(3) 2.011(3), and Cu(1)–N(1) 2.014(3) Å] and one nitrogen atom of the thiocyanate group [Cu(1)–N(99) 1.907(3) Å] constitute the equatorial plane, and N(98) atom of the second SCN− ion is in apical position [Cu(1)–N(98) distance 2.692(3) Å]. The angular structural index parameter τ [36] expressed here as the difference between the bond angles N(99)–Cu(1)–N(1) and N(3)–Cu(1)–N(4) divided by 60 has a value of 0.32. The Cu(1)–N(98) bond length is ca. 0.68 Å longer than the Cu–N distances in the equatorial plane, which makes [Cu(tppz)(SCN)2] a very rare example of copper(II) complexes of general formula [Cu(N–N–N)(NSC)2], where N–N–N stands a neutral tridentate N-donor ligand. Generally, the elongation of the apical Cu–N bond in [Cu(N–N–N)(NSC)2] compounds is much smaller and falls in the range 0.08–0.37 Å [37]. Such long distance to thiocyanate group in apical position indicates very weak Cu(1)–N(98) coordination bond. The thiocyanate groups are quasi-linear with values of the N–C–S angle of 178.8(4)° and 179.3(4)°.
The tppz ligand is appreciably twisted, dihedral angles between the pyrazine ring and each of the pyridyl rings are equal 14.99(11)°, 19.47(11)°, 30.16(7)°, and 34.97(8)°. The first two values concern coordinated pyridyl rings. The pyrazine ring itself is puckered with maximum atomic deviations from a best mean plane being 0.0907 Å at C(4). The torsion angles N1–C1–C2–N2 and N2–C3–C4–N1 are −16.3(8) and −16.8(4)°, respectively, and the dihedral angle between the two C–N–C planes of the pyrazine ring is 8.79(10)°. The value of the dihedral angle between the mean plane of the pyrazine ring and the equatorial plane defined by Cu(1), N1(1), N(3), N(4), and N(99) is practically identical and equals 9.57(8)°. The non-planarity of the pyrazine ring is unexceptional. It has been reported for the related structures [20, 23–25], and the factor responsible for destabilizing the planar geometry of the pyrazine ring has a pure electronic origin [38].
Geometry optimization
The geometry of [Cu(tppz)(SCN)2] was optimized in doublet state using the DFT method with the B3LYP functional in gas phase and using PCM (polarizable continuum model) approach. The calculated geometric parameters are gathered in Table 3. The optimized geometry of [Cu(tppz)(SCN)2] displays a distorted square pyramidal environment, and general trends observed in the experimental data are satisfactorily reproduced in the calculations. However, the calculated Cu–Napical distance is significantly lower in comparison with the experimental value, both for gas phase and PCM optimization. Due to the discrepancy between experimental and calculated values of the apical Cu–N bond in [Cu(tppz)(SCN)2], TDDFT calculations were performed starting from the experimental data.
Electronic spectrum
The electronic absorption spectrum of [Cu(tppz)(SCN)2] in methanol is given in Fig. 3. The complex [Cu(tppz)(SCN)2] shows three well-resolved bands in the UV region: an intense and sharp peak centered at 213.5 nm and two less intense absorptions located at 300.5 and 372.0 nm. The lowest-energy absorption band originates from LLCT transitions, whereas the bands in the range 400–300 nm are generally attributed to the LMCT transitions.
In addition, the solution spectrum of [Cu(tppz)(SCN)2] displays a single broad band with maximum at 693.5 nm. This absorption is attributed to ligand-field transitions, and its location is consistent with the five-coordinate geometry with Cu(II) ion adapting a distorted SP geometry. Cu(II) complexes with TBP geometry usually show a maximum at λ > 800 nm with a higher energy shoulder [3].
For more qualitative description of the electronic absorption spectrum, the nature of electronic transitions was investigated by the time-dependent density functional (TDDFT) method. The TDDFT calculations of [Cu(tppz)(SCN)2] were performed starting from the experimental data (Fig. 3). The investigated complex is of large size. The number of basis functions is equal 746 and 120 electron transitions calculated by the TDDFT method do not comprise all the experimental absorption bands. The shortest wavelength experimental band of [Cu(tppz)(SCN)2] is not assigned to the calculated transitions. As the solution spectrum of 2,3,5,6-tetra-(2-pyridyl)pyrazine exhibits intense absorption in this region, some additional intraligand transitions π(tppz) → π*(tppz) are expected to be found at higher energies in the calculations for [Cu(tppz)(SCN)2]. In Fig. 3, each calculated transition is represented by a Gaussian function \( y = \mathop {ce}\nolimits^{{\mathop { - bx}\nolimits^{2} }} \) with the height (c) equal to the oscillator strength and b equal to 0.04 nm−2. As can be seen from Fig. 3, the calculated curves are nicely fitted to those from the experimental measurements.
Table 4 presents the most important electronic transitions calculated with the TDDFT method, assigned to the observed absorption bands of [Cu(tppz)(SCN)2]. The assignment of the calculated orbital excitations to the experimental bands was based on an overview of the contour plots and relative energy to the occupied and unoccupied orbitals involved in the electronic transitions. The simplified molecular orbital diagram of [Cu(tppz)(SCN)2] is presented in Fig. 4.
The TDDFT/PCM calculations show that the longest wavelength experimental with maximum at 693.5 nm involves the transitions between β-spin HOMO-3, HOMO-1, HOMO and LUMO, LUMO + 1 as well as the transition between α-spin HOMO-1 and LUMO. The LUMO orbital with β spin is mainly \( {\text{d}}_{{x^{2} - y^{2} }} \) copper orbital in character, whereas the spin HOMO-3, HOMO-1, and HOMO are non-bonding combination of a sulfur lone pair and nitrogen p orbital localized on the thiocyanate ligands with admixture of dCu orbitals. β-spin LUMO + 1 and α-spin LUMO are of mixed character dCu + π*tppz. Accordingly, the transitions assigned to the absorption at 693.5 nm can be seen as mixed d → d (LF), SCN− → d (LMCT), and SCN− → tppz (LLCT), or a delocalized MLLCT (metal–ligand-to-ligand CT) description can be used.
The absorption bands at 372.0 and 300.5 nm involve a multitude of electronic transitions calculated in the 400–270 nm region, but maximum contributions are from H-5(α) → L(α), H-4(β) → L+2(β), H-6(α) → L+1(α), and H-5(β) → L + 2(β). These transitions can be seen as mixed tppz → Cu (Ligand–Metal Charge Transfer; LMCT) and π(tppz) → π*(tppz) (intraligand charge transfer).
Supplementary data
Supplementary data for C26H16CuN8S2 are available from the CCDC, 12 Union Road, Cambridge CB2 1EZ, UK on request, quoting the deposition number CCDC 866822.
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Acknowledgments
The Gaussian03 calculations were carried out in the Wrocław Centre for Networking and Supercomputing, WCSS, Wrocław, Poland under calculational Grant No. 18.
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Machura, B., Świtlicka, A., Palion, J. et al. Synthesis, spectroscopic characterization, X-ray structure, and DFT calculations of [Cu(tppz)(SCN)2]. Struct Chem 24, 89–96 (2013). https://doi.org/10.1007/s11224-012-0016-0
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DOI: https://doi.org/10.1007/s11224-012-0016-0