Abstract
It is demonstrated that the introduction of p-tert-butyl groups dramatically influences the conformational behaviour of the mercaptothiacalix[4]arene molecules. Quantum-chemical computations in combination with IR and NMR spectroscopy prove that, in contrast to closely related calixarenes, the 1,3-alternate becomes a dominant conformer of p-tert-butyl-mercaptothiacalix[4]arene not only in crystal, but also in solutions and in vacuum. It is shown that the title molecules form essentially non-cooperative intramolecular hydrogen bonds: their SH groups are intramolecularly H-bonded solely to the sulfide groups bridging thiophenolic units. The enthalpy of this bonding, evaluated from Iogansen’s rule, amounts to ca. 1.5 kcal mol−1 per one SH···S bond, which about four times smaller than the enthalpies of cooperative intramolecular H-bonds formed by related calixarenes and thiacalixarenes.
Similar content being viewed by others
References
(a) Gutsche, C.D.: Calixarenes (Monographs in Supramolecular Chemistry). Washington University (USA), London Royal Soc. Chem. (1989); (b) Gutsche, C.D.: Calixarenes Revisited. The Royal Society of Chemistry, Cambridge (1998)
Asfari, Z., Böhmer, V., Harrowfield, J.M., Vicens, J. (ed.): Calixarenes 2001. Kluwer Academic Publishers, Dordrecht (2001)
(a) Mandolini, L., Ungaro, R. (ed.): Calixarenes in Action. Imperial College, London (2000); (b) Vicens, J., Harrowfield, J. (ed.): Calixarenes in Nanoworld. Springer, Dordrecht (2007); (c) Lhotak, P.: Chemistry of thiacalixarenes. Eur. J. Org. Chem. 1675–1692 (2004); (d) Morohashi, N., Narumi, F., Iki, N., Hattori, T., Miyano, S.: Thiacalixarenes. Chem. Rev. 106, 5291–5316 (2006)
Hajek, F., Hosseini, M.W., Graf, E., De Cian, A., Fischer, J.: Molecular tectonics. 6. Self-assembly of convex and concave molecular tectons to form a linear molecular array in the solid state. Angew. Chem., Int. Ed. Engl. 36, 1760–1762 (1997)
(a) Iki, N., Kumagai, H., Morohashi, N., Ejima, K., Hasegawa, M., Miyanari, S., Miyano, S.: Selective oxidation of thiacalix[4]arenes to the sulfinyl- and sulfonylcalix[4]arenes and their coordination ability to metal ions. Tetrahedron Lett. 39, 7559–7562 (1998); (b) Mislin, G., Graf, E., Hosseini, M.W., Bilyk, A., Hall, A.K., Harrowfield, J.M., Skelton, B.W., White, A.H.: Thiacalixarenes as cluster keepers: synthesis and structural analysis of a magnetically coupled tetracopper(II) square. Chem. Commun. 373–374 (1999); (c) Lamartine, R., Bavoux, C., Vocanson, F., Martin, A., Senlis, G., Perrin, M.: Synthesis, X-ray crystal structure and complexation properties towards metal ions of new thiacalix[4]arenes Tetrahedron Lett. 42, 1021–1024 (2001); (d) Stoikov, I.I., Omran, O.A., Solovieva, S.E., Latypov, Sh.K., Enikeev, K.M., Gubaidullin, A.T., Antipin, I.S., Konovalov, A.I.: The synthesis of tetracarbonyl derivatives of thiacalix[4]arene in different conformations and their complexation properties towards alkali metal ions. Tetrahedron. 59, 1469–1476 (2003); (e) Solovieva, S.E., Gruner, M., Omran, A.O., Gubaidullin, A.T., Litvinov, I.A., Habicher, W.D., Antipin, I.S., Konovalov, A.I. Izv. Akad. Nauk. Ser. Khim. (Russian) 2041–2048 (2005); Russ. Chem. Bull., Int. Ed.: Synthesis, structure, and complexation properties of tetraamide derivatives of thiacalix[4]arene in different conformations. 54, 2104–2112 (2005); (f) Iki, N., Morohashi, N., Narumi, F., Miyano, S.: High complexation ability of thiacalixarene with transition metal ions. The effects of replacing methylene bridges of tetra(p-t-butyl)calix[4]arenetetrol by epithio groups. Bull. Chem. Soc. Jpn. 71, 1597–1603 (1998); (g) Bilyk, A., Hall, A.K., Harrowfield, J.M., Hosseini, M.W., Skelton, B.W., White, A.H.: Systematic structural coordination chemistry of p-tert-butyltetrathiacalix[4]arene: 1. Group 1 elements and congeners. Inorg. Chem. 40, 672–686 (2001); (h) Iki, N., Miyano, S.: Can thiacalixarene surpass calixarene? J. Incl. Phen. Macr. Chem. 41, 99–105 (2001).
Rao, Ph., Hosseini, M.W., De Cian, A., Fischer, J.: Synthesis and structural analysis of mercaptothiacalix[4]arene. Chem. Commun. 2169–2170 (1999)
Akdas, H., Graf, E., Hosseini, M.W., De Cian, A., Bilyk, A., Skelton, B.W., Koutsantonis, G.A., Murray, I., Harrowfield, J.M., White, A.H.: Koilands from thiophiles: mercury(II) clusters from thiacalixarenes. Chem. Commun. 1042–1043 (2002)
Kovalenko, V.I., Chernova, A.V., Borisoglebskaya, E.I., Katsyuba, S.A., Zverev, V.V., Shagidullin, R.R., Antipin, I.S., Solovieva, S.E., Stoikov, I.I., Konovalov, A.I.: Cooperative intramolecular hydrogen bond and conformations of thiocalix[4]arene molecules Izv. Akad. Nauk. Ser. Khim. (Russian) 762 (2002); Russ. Chem. Bull., Int. Ed. 51, 825–827 (2002)
Katsyuba, S., Kovalenko, V., Chernova, A., Vandyukova, E., Zverev, V., Shagidullin, R., Antipin, I., Solovieva, S., Stoikov, I., Konovalov, A.: Vibrational spectra, co-operative intramolecular hydrogen bonding and conformations of calix[4]arene and thiacalix[4]arene molecules and their para-tert-butyl derivatives. Org. Biomol. Chem. 3, 2558–2565 (2005)
Baker, J., Jarzecki, A., Pulay, P.: Direct scaling of primitive valence force constants: an alternative approach to scaled quantum mechanical force fields. J. Phys. Chem. A 102, 1412–1424 (1998)
Parr, R.G., Yang, W.: Density Functional Methods of Atoms and Molecules. Oxford University Press, New York (1989)
Suwattanamala, A., Magalhaes, A.L., Gomes, J.A.N.F.: Structure and conformational equilibrium of new thiacalix[4]arene derivatives. Chem. Phys. Lett. 385, 368–373 (2004)
Suwattanamala, A., Magalhaes, A.L., Gomes, J.A.N.F.: Computational study of calix[4]arene derivatives and complexation with Zn2+. Chem. Phys. 310, 109–122 (2005)
Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Zakrzewski, V.G., Montgomery, J.A., Stratmann, R.E., Burant, J.C., Dapprich, S., Millam, J.M., Daniels, A.D., Kudin, K.N., Strain, M.C., Farkas, O., Tomasi, J., Barone, V., Cossi, M., Cammi, R., Mennucci, B., Pomelli, C., Adamo, C., Clifford, S., Ochterski, J., Petersson, G.A., Ayala, P.Y., Cui, Q., Morokuma, K., Malick, D.K., Rabuck, A.D., Raghavachari, K., Foresman, J.B., Cioslowski, J., Ortiz, J.V., Stefanov, B.B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Gomperts, R., Martin, R.L., Fox, D.J., Keith, T., Al-Laham, M.A., Peng, C.Y., Nanayakkara, A., Gonzalez, C., Challacombe, M., Gill, P.M.W., Johnson, B.G., Chen, W., Wong, M.W., Andres, J.L., Head-Gordon, M., Replogle, E.S., Pople, J.A.: Gaussian 98 (Revision A.2), Gaussian, Inc., Pittsburgh (1998)
Becke, A.D.: Density-functional thermochemistry. III. The role of exact exchange J. Chem. Phys. 98, 5648–5662 (1993)
Lee, C., Yang, W., Parr, R.G.: Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys. Rev. B 37, 785–789 (1988)
(a) Sipachev, V.A.: Local centrifugal distortions caused by internal motions of molecules J. Mol. Struct. 567–568, 67–72 (2001); (b) Sipachev, V.A.: Anharmonic corrections to structural experiment data. Struct. Chem. 2/3, 167–172 (2000).
(a) Katsyuba, S.A., Grunenberg, J., Schmutzler, R.: Vibrational spectra and conformational isomerism of calixarene building blocks. Part I. Diphenylmethane, (C6H5)2CH2. J. Mol. Struct. 559, 315–320 (2001); (b) Katsyuba, S.A., Vandyukova, E.E.: Scaled quantum mechanical computations of vibrational spectra of organoelement molecules, containing the atoms P, S, and Cl. Chem. Phys. Lett. 377, 658–662 (2003).
(a) Ditchfield, R.: Self-consistent perturbation-theory of diamagnetism. 1. Gauge-invariant LCAO method for NMR chemical-shifts. Mol. Phys. 27, 789–807 (1974); (b) Wolinski, K., Hinton, J.F., Pulay, P.: Efficient implementation of the gauge-independent atomic orbital method for NMR chemical-shift calculations. J. Am. Chem. Soc. 112, 8251–8260 (1990).
Groenen, L.C., Steinwender, E., Lutz, B.T.G., van der Maas, J.H., Reinhoudt, D.N.: Solvent effects on the conformations and hydrogen bond structure of partially methylated p-tert-butylcalix[4]arenes. J. Chem. Soc. Perkin Trans. 2, 1893–1898 (1992)
(a) Andreetti, G.D., Ungaro, R., Pochini, A.: Crystal and molecular structure of cyclo{quater[(5-t-butyl-2-hydroxy-1,3-phenylene)methylene]} toluene (1:1) clathrate. J. Chem. Soc., Chem. Commun. 1005–1007 (1979); (b) Ungaro, R., Pochini, A., Andreetti, G.D., Sangermano, V.: Molecular inclusion in functionalized macrocycles. Part 8. The crystal and molecular structure of calix[4]arene from phenol and its (1:1) and (3:1) acetone clathrates. J. Chem. Soc., Perkin Trans. 2, 1979–1985 (1984); (c) Akdas, H., Bringel, L., Graf, E., Hosseini, M.W., Mislin, G., Pansanel, J., Cian, A., Fischer, J.: Thiacalixarenes: synthesis and structural analysis of thiacalix[4]arene and of p-tert-butylthiacalix[4]arene. Tetrahedron Lett. 39, 2311–2314 (1998).
Schatz, J.: Recent application of ab initio calculations on calixarenes and calixarene complexes. A review. Collect. Czech. Chem. Comm. 69, 1169–1194 (2004), and references cited therein.
(a) Bernardino, R.J., Cabral, B.J.C.: Structure, conformational equilibrium, and proton affinity of calix[4]arene by density functional theory. J. Phys.Chem. A 103, 9080–9085 (1999); (b) Bernardino, R.J., Cabral B.J.C.: Complexation of calix[4]arene with alkali metal cations: conformational binding selectivity and cation-driven inclusion. Supramol. Chem. 14, 57–66 (2002).
Bernardino, R.J., Cabral, B.J.C.: Structure and conformational equilibrium of thiacalix[4]arene by density functional theory. J. Mol. Struct. 549, 253–260 (2001)
According to HF/4-31G* computations (Ref. 26), the symmetry of the cone conformer of calix[4]arene is C2. Probably, this result differs from other quantum chemical data (Ref. 8, 9, 22) because of the comparatively small basis set.
Billes, F., Mohammed-Ziegler, I.: Ab initio equilibrium geometry and vibrational spectroscopic study of 25,26,27,28-tetrahydroxycalix[4]arene. Supramol.Chem. 14, 451–459 (2002)
(a) Cancès, M.T., Mennucci, B., Tomasi, J.: A new integral equation formalism for the polarizable continuum model: theoretical background and applications to isotropic and anisotropic dielectrics. J. Chem. Phys. 107, 3032–3041 (1997); (b) Cossi, M., Barone, V., Mennucci, B., Tomasi, J.: Ab initio study of ionic solutions by a polarizable continuum dielectric model. Chem. Phys. Lett. 286, 253–260 (1998); (c) Mennucci, B., Tomasi, J.: Continuum solvation models: a new approach to the problem of solute’s charge distribution and cavity boundaries. J. Chem. Phys. 106, 5151–5158 (1997); (d) Cossi, M., Scalmani, G., Rega, N., Barone, V.: New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution. J. Chem. Phys. 117, 43–54 (2002).
Wilson, E.B. Jr.: The normal modes and frequencies of vibration of the regular plane hexagon model of the benzene molecule. Phys. Rev. 45, 706–714 (1934)
Katsyuba, S.A., Schmutzler, R., Hohm, U., Kunze, C.: Vibrational spectra and conformational isomerism of calixarene building blocks. III. 2,6-Dimethylanisole and n-propyl-2,6-dimethylphenyl ether. J. Mol. Struct. 610, 113–125 (2002)
David, J.G., Hallam, H.E.: Hydrogen-bonding studies of thiophenols. Spectrochim. Acta 21, 841–850 (1965)
Iogansen, A.V.: Direct proportionality of the hydrogen bonding energy and the intensification of the stretching ν(XH) vibration in infrared spectra. Spectrochim. Acta (A) 55, 1585–1612 (1999)
Shagidullin, R.R., Chernova, A.V., Katsyuba, S.A., Avvakumova, L.V., Shagidullin, Rif.R.: Energetics of intramolecular hydrogen bonds and conformations of ω-diphenylphosphoryl- and ω-diphenylthiophosphoryl-substituted aliphatic alcohol molecules. Izv. Akad. Nauk. Ser. Khim. (Russian) 55 (2004); Russ. Chem. Bull., Int. Ed. 53, 55–59 (2004).
Acknowledgements
The authors are indebted to all staff-members of the Supercomputer centre of the Kazan Scientific Centre of the Russian Academy of Sciences and especially to Dr. D. Chachkov for technical assistance in the computations and valuable advice. Special thanks are due to Dr. M.A. Tafipolsky for permission to use his version of the program, adopted from Sipachev [17].
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Katsyuba, S.A., Zvereva, E.E., Chernova, A.V. et al. IR and NMR spectra, intramolecular hydrogen bonding and conformations of mercaptothiacalix[4]arene molecules and their para-tert-butyl-derivative. J Incl Phenom Macrocycl Chem 60, 281–291 (2008). https://doi.org/10.1007/s10847-007-9376-2
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10847-007-9376-2