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Morpho-phytochemical screening and molecular diversity of pomegranate accessions grown in Halabja Governorate, Kurdistan Region-Iraq

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Abstract

Halabja governorate in the Kurdistan region-Iraq is famous for having high-quality pomegranate accessions. The current study was conducted to evaluate the morpho-phytochemical amount of pomegranate functional food and the genetic diversity as an important tool for the characterization of the genetic resources for germplasm management and the identification of the best genotypes for genetic improvement. There were highly significant morphometric differences (P ≤ 0.05) among 24 genotypes, whose mean values for fruit weight, peel thickness, and weight of 100 Arils, total flavonoid content (TFC) and total phenolic content (TPC), antioxidant activity, total soluble solid content (TSS) were 299.21 g, 3.47 mm and 38.59 g, 54.50,47.97 µg/ml, 21.08 µg/ml and 14.59 Brix, respectively. In addition, inter-simple sequence repeat (ISSR) was utilized to assess the genetic diversity of the collected pomegranate genotypes. Twelve random primers of produced products plus a number of the amplified primer bands ranging from 3 to 12 and total number of 83 amplified bands were produced, among which 78 bands were polymorphic and 5 bands were monomorphic. The highest, lowest, and mean values of polymorphic bands were (11, 3, and 6.5), respectively. The PIC values ranged from 0.58 to 0.90. The dendrogram clusters for all the selections showed dissimilarity coefficients ranging from 0.22 to 0.23 (G4 vs. G5) to 0.63 (G13 vs. G14), and five groups (A, B, C, D, and F) with a mean dissimilarity (0.49). According to the results, morphometric and biochemical properties are significant aspects of development, discernment, and classification. ISSR markers allow the identification of different selections and assessing the genetic similarity among pomegranate accessions, which would facilitate their use as genetic stock in breeding programs.

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References

  • Abdulrahman AB, Mhamad HJ, Talb SS, Aljabary AM (2021) Physicochemical properties and phenolic contents of fresh and concentrated juice of four pomegranate cultivars in Iraq. In: IOP conference series: earth and environmental science, vol 910(1), 012093. IOP Publishing

  • Adiletta G, Petriccione M, Liguori L, Pizzolongo F, Romano R, Di Matteo M (2018) Study of pomological traits and physico-chemical quality of pomegranate (Punica granatum L.) genotypes grown in Italy. Eur Food Res Technol 244:1427–1438

    Article  CAS  Google Scholar 

  • Ahmed AA, Sirwa AQ, Nawroz AT (2022) CDDP and ISSR markers-assisted diversity and structure analysis in Iraqi Mazu (Quercus infectoria Oliv.) accessions. All Life 15(1):247–261. https://doi.org/10.1080/26895293.2022.2042401

    Article  CAS  Google Scholar 

  • Ajal A, Jbir R, Melgarejo P, Hernández F, Haddioui A, Hannachi A (2014) Efficiency of inter simple sequence repeat (ISSR) markers for the assessment of genetic diversity of Moroccan pomegranate (Punica granatum L.) cultivars. Biochem Syst Ecol 56:24–31. https://doi.org/10.1016/j.bse.2014.04.003

    Article  CAS  Google Scholar 

  • Akbarpour V, Sharifani Hemmati K, M, (2009) Physical and chemical properties of pomegranate (Punica granatum L.) fruit in maturation stage. Am Eur J Agric Environ Sci 6(4):411–416

    CAS  Google Scholar 

  • Almiahy FH, Jum’a FF, (2017) Evaluation of the genetic diversity of pomegranate accessions some Iraqi Pomegranate (Punica granatum L.) genotypes using ISSR marker. IOSR J Agric Vet Sci 10:44–49

    Google Scholar 

  • Al-Mousa R, Al-Biski F, Alshaal A (2019) Molecular characterization of some syrian pomegranate (Punica granatum L) genotypes. Jordan J Agric Sci 15:3

    Google Scholar 

  • Alwaely AA, Al-qaralocy HN, Al-Asadi KA, Chaichan MT, Kazem HA (2015) The environmental aftermath resulted from chemical bombardment of Halabja Territory for the period 1988–2014. Int J Sci Eng Res 6(9):40–44

    Google Scholar 

  • Amar MH, El-Zayat MA (2017) Utilization of ISTR, ISSR and SRAP molecular markers to reveal and classify Egyptian pomegranates ('Punica granatum’L). Plant omics 10(5):237–245. https://doi.org/10.3316/informit.358807885554620

    Article  CAS  Google Scholar 

  • Arlotta C, Toscano V, Genovese C, Calderaro P, Raccuia PGD, SA, (2022) Nutraceutical content and genetic diversity share a common pattern in new pomegranate genotypes. Molecules 27(2):389

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Aziz RR, Tahir NAR (2022) Growth and fruit morpho-physicochemical diversity assessment of local melon genotypes. Tikrit J Agric Sci 22(3):191–204

    Google Scholar 

  • Chater JM, Merhaut DJ, Jia Z, Preece MPA, JE, (2018) Fruit quality traits of ten California-grown pomegranate cultivars harvested over three months. Sci Hortic 237:11–19

    Article  Google Scholar 

  • Ejjilani A, Houmanat K, Hanine H, Hssaini L, Elfazazi K, Hernandez F, Razouk HI, R, (2022) Pomegranate morpho-chemodiversity: computational investigations based on in-vivo and in-vitro screening. Heliyon 8(5):e09345

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • El Moujahed S, Dinica RM, Cudalbeanu M, Avramescu SM, Msegued Ayam I, Ouazzani Chahdi F, Errachidi KandriRodi Y, F, (2022) Characterizations of six pomegranate (Punica granatum L) varieties of global commercial interest in Morocco: pomological, organoleptic. Chem Biochem Stud Mol 27(12):3847

    CAS  Google Scholar 

  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14(8):2611–2620. https://doi.org/10.1111/j.1365-294X.2005.02553

    Article  CAS  PubMed  Google Scholar 

  • Gadže J, Prlić M, Bulić M, Leko M, Barbarić M, Vego D, Raguž M (2011) Physical and chemical characteristics and sensory evaluation of pomegranate fruit of (Punica granatum L.) cv. Glavaš. Pomologia Croatica: Glasilo Hrvatskog agronomskog društva 17(3–4):87–98

    Google Scholar 

  • Hajiyeva SV, Akparov ZI, Hasanov NA, Mustafayeva ZP, Hajiyev ES, Mammadov AT, Izzatullayeva VI, Babayeva SM, Sharifova SS, Mammadov AM, Abbasov MA (2018) ISSR analysis of variability of cultivated form and varieties of pomegranate (Punica granatum L.) from Azerbaijan. Russ J Genet 54(2):188–197. https://doi.org/10.1134/S1022795418020072

    Article  CAS  Google Scholar 

  • Harel-Beja R, Sherman A, Rubinstein M, Eshed R, Bar-Ya’akov I, Trainin T, Ophir R, Holland D, (2015) A novel genetic map of pomegranate based on transcript markers enriched with QTLs for fruit quality traits. Tree Genet Geno 11:109

    Article  Google Scholar 

  • Hasnaoui N, Mars M, Ghaffari S, Trifi M, Melgarejo P, Hernandez F (2011) Seed and juice characterization of pomegranate fruits grown in Tunisia: comparison between sour and sweet cultivars revealed interesting properties for prospective industrial applications. Ind Crop Prod 33:374–381

    Article  CAS  Google Scholar 

  • Hmid I, Hanine H, Elothmani D, Oukabli A (2018) The physico-chemical characteristics of Morrocan pomegranate and evaluation of the antioxidant activity for their juices. J Saudi Soc Agric Sci 17(3):302–309

    Google Scholar 

  • Holland D, Hatib K, Bar-Ya’akov I, (2009) Pomegranate: botany, horticulture. Breed Hortic Rev 35(2):127–191

    Article  Google Scholar 

  • Holland D, Bar-Ya’akov I (2018) Pomegranate (Punica granatum L) breeding. In: Advances in plant breeding strategies: advance in plant breeding strategies: fruits. Springer International Publishing, Cham, pp 601–647. https://doi.org/10.1007/978-3-319-91944-7-15

  • Juss P, Shaw PJ (2014) Protocol for test on distinctness, uniformity and stability. Commun Plant Var Office CPVO-TP 1:286–310

    Google Scholar 

  • Karapetsi L, Pantelidis G, Pratsinakis ED, Drogoudi P, Madesis P (2021) Fruit quality traits and genotypic characterization in a pomegranate ex situ (Punica granatum L.) collection in Greece. Agriculture 11(6):482. https://doi.org/10.3390/agriculture11060482

    Article  CAS  Google Scholar 

  • Khadivi A, Mirheidari F, Moradi Y, Paryan S (2020) Morphological variability of wild pomegranate (Punica granatum L.) accessions from natural habitats in the Northern parts of Iran. Sci Hortic 264:109165

    Article  Google Scholar 

  • Khadivi-Khub A (2015) Physiological and genetic factors influencing fruit cracking. Acta Physiol Plant 37(1):1718

    Article  Google Scholar 

  • Lahouel M, Belhadj S (2022) Morphological variability of the fruits of seven pomegranate (Punica granatum L.) cultivars grown in Messaad region in central Algeria. Biotechnol Agron Soc Environ 26(1):16–29

    Article  Google Scholar 

  • Lateef D, Mustafa K, Tahir N (2021) Screening of Iraqi barley accessions under PEG-induced drought conditions. All Life 14(1):308–332

    Article  CAS  Google Scholar 

  • Li X, Wasila H, Liu L, Yuan T, Gao Z, Ahmad ZB, I, (2015) Physicochemical characteristics, polyphenol compositions and antioxidant potential of pomegranate juices from 10 Chinese cultivars and the environmental factors analysis. Food Chem 175:575–584

    Article  CAS  PubMed  Google Scholar 

  • Liu K, Muse S (2005) Power Marker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21(9):2128–2129. https://doi.org/10.1093/bioinformatics/bti282

    Article  CAS  PubMed  Google Scholar 

  • Madadi M, Zamani Z, Fatahi R (2017) Assessment of genetic variation within commercial Iranian pomegranate (Punica granatum L) cultivars, using ISSR and SSR Markers. Turk J Agric Food Sci Technol, 5: 622–628. https://doi.org/10.24925/turjaf.v5i6.622-628.1100

  • Martínez JJ, Hernández F, Abdelmajid H, Legua P, Martínez R, Amine AE, Melgarejo P (2012) Physico-chemical characterization of six pomegranate cultivars from Morocco: processing and fresh market aptitudes. Sci Hort 140:100–106

    Article  Google Scholar 

  • Mayuoni-Kirshinbaum L, Porat R (2014) The flavor of pomegranate fruit: a review. J Sci Food Agric 94(1):21–27

    Article  CAS  PubMed  Google Scholar 

  • Meena VS, Bibwe B, Bhushan B, Jalgaonkar K, Mahawar M (2021) Physicochemical characterization of selected pomegranate (Punica granatum L) cultivars. Turk J Agric Eng Res 2(2):425–433

    Article  Google Scholar 

  • Melgarejo P, Calín-Sánchez A, Vázquez-Aráujo L, Hernández F, Martínez JJ, Legua P, Carbonell-Barrachina AA (2011) Volatile composition of pomegranates from 9 Spanish cultivars using headspace solid phase microextraction. J Food Sci 76:114–120

    Article  Google Scholar 

  • Melgarejo P, Núñez-Gómez D, Legua P, Martínez-Nicolás JJ, Almansa MS (2020) Pomegranate (Punica granatum L.) a dry pericarp fruit with fleshy seeds. Trends Food Sci Technol 102:232–236

    Article  CAS  Google Scholar 

  • Melgarejo-Sánchez P, Martínez JJ, Legua P, Martínez R, Hernández F, Melgarejo P (2015) Quality, antioxidant activity and total phenols of six Spanish pomegranates clones. Sci Hortic 182:65–72

    Article  Google Scholar 

  • Mena P, García-Viguera C, Navarro-Rico J, Moreno DA, Bartual J, Saura D, Martí N (2011) Phytochemical characterisation for industrial use of pomegranate (Punica granatum L.) cultivars grown in Spain. J Sci Food Agric 91:1893–1906

    Article  CAS  PubMed  Google Scholar 

  • Mousavinejad G, Emam-Djomeh Z, Rezaei K, Haddad Khodaparast MH (2009) Identification and and quantification of phenolic compounds and their effects on antioxidant activity in pomegranate juices of eight Iranian cultivars. Food Chem 115:1274–1278. https://doi.org/10.1016/j.foodchem.2009.01.044

    Article  CAS  Google Scholar 

  • Nikdel K, SEIFI E, Babaie H, Sharifani M, Hemmati K, (2016) Physicochemical properties and antioxidant activities of five Iranian pomegranate cultivars (Punica granatum L) in maturation stage. Acta Agric Slovenica 107(2):277–286

    Article  CAS  Google Scholar 

  • Pasquali E, Palumbo F, Barcaccia G (2022) Assessment of the genetic distinctiveness and uniformity of pre-basic seed stocks of italian ryegrass varieties. Genes 13(11):2097

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Peakall RO, Smouse PE (2006) GENALEX 6: genetic analysis in Excel population genetic software for teaching and research. Mol Ecol 6(1):288–295

    Article  Google Scholar 

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155(2):945–959. https://doi.org/10.1093/genetics/155.2.945

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Qin G, Xu C, Ming R, Tang H, Guyot R, Kramer E, Hu Y, Yi X, Qi Y, Xu X, Gao Z (2017) The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis. Plant J 91(6):1108–1128. https://doi.org/10.1111/tpj.13625

    Article  CAS  PubMed  Google Scholar 

  • Rasul KS, Grundler FM, Tahir NA (2022) Genetic diversity and population structure assessment of Iraqi tomato accessions using fruit characteristics and molecular markers. Hortic Environ Biotechnol 63(4):523–538. https://doi.org/10.1007/s13580-022-00429-3

    Article  CAS  Google Scholar 

  • Re R, Pellegrini N, Proteggente A, Pannala A, Yang M, Rice-Evans C (1999) Antioxidant activity applying an improved ABTS radical cation decolorization assay. Free Radical Biol Med 26(9–10):1231–1237

    Article  CAS  Google Scholar 

  • Sarkhosh A, Zamani Z, Fatahi R, Ranjbar H (2009) Evaluation of genetic diversity among iranian soft-seed pomegranate accessionsby fruit characteristics and RAPD markers. Sci Hortic 121:313–319. https://doi.org/10.1016/j.scienta.2009.02.024

    Article  CAS  Google Scholar 

  • Silva A, Rana S, Narzary D, Verma N, Meshram T, Ranade A (2013) Pomegranate biology and biotechnology: a review. Sci Hortic. https://doi.org/10.1016/j.scienta.2013.05.017

    Article  Google Scholar 

  • Tahir NA, Omer DA, Lateef DA, Ahmad SH, Salih SH, Hiwakhal LK (2019) Diversity and population structure analysis of faba bean (Vicia Faba L.) accessions using SSR markers. J Agric Sci Technol 21(2):463–474

    Google Scholar 

  • Tahir NA, Rasul KS, Lateef DD, Grundler FM (2022) Effects of oak leaf extract, biofertilizer, and soil containing oak leaf powder on tomato growth and biochemical characteristics under water stress conditions. Agriculture 12(12):2082. https://doi.org/10.3390/agriculture12122082

    Article  CAS  Google Scholar 

  • Tahir N, Lateef D, Rasul K, Rahim D, Mustafa K, Sleman S, Mirza A, Aziz R (2023) Assessment of genetic variation and population structure in Iraqi barley accessions using ISSR, CDDP, and SCoT markers. Czech J Genet Plant Breed 59(3). https://doi.org/10.17221/112/2022-CJGPB

  • Talebi M, Bahar M, Sharifnabi B, Yamchi A (2011) Evaluation of genetic diversity among Iranian pomegranate (Punica granatum L) cultivars, using ISSR and RAPD markers. J Taxonomy Biosistematics, 3rd Year, 35–44.

  • Tehranifar A, Zarei M, Esfandiyari B, Nemati Z (2010) Physicochemical properties and antioxidant activities of pomegranate fruit (Punica granatum) of different cultivars grown in Iran. Hortic Environ Biotechnol 51(6):573–579

    Google Scholar 

  • Tezcan F, Gultekin-Ozguven M, Diken T, Ozcelik B, Erim FB (2009) Antioxidant activity and total phenolic, organic acid and sugar content in commercial pomegranate juices. Food Chem 115:873–877. https://doi.org/10.1016/j.foodchem.2008.12.103

    Article  CAS  Google Scholar 

  • Wetzstein HY, Zhang Z, Ravid N, Wetzstein ME (2011) Characterization of attributes related to fruit size in pomegranate. HortScience 46(6):908–912

    Article  Google Scholar 

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Acknowledgements

The author would like to thank farmers Shakhawn Bawakochaki, Ahmad Ali Tape Toleke and Dahahir Sharif khurmali, as well as Sarwar Saber and Aram Akram for their assistances for collecting samples.

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Correspondence to Jamal Mahmood Faraj.

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Faraj, J.M. Morpho-phytochemical screening and molecular diversity of pomegranate accessions grown in Halabja Governorate, Kurdistan Region-Iraq. Genet Resour Crop Evol 70, 2657–2670 (2023). https://doi.org/10.1007/s10722-023-01593-w

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