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Assessment of variability and genetic divergence of longan genotypes (Dimocarpus longan Lour.) based on qualitative and quantitative traits

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Abstract

Longan (Dimocarpus longan Lour.) is an important underutilized fruit crop. There is currently limited information available on the genetic background of longans, which is a key bottleneck in longan improvement. Studies on the extent of genetic variability and genetic divergence are crucial and it can provide relevant information which can be very useful for crop improvement programmes. In the present study, a total of 54 qualitative and quantitative traits were investigated of 20 different longan genotypes to determine the morphological and physiochemical traits that. Results revealed that the significant variability existed in the studied traits except few. Among the qualitative traits petiole colour, leaflet curvature, young leaf colour, mature leaf colour, branching density, leaflet midrib colour, abundance of flower, trunk surface, fruit maturity group, and tree vigour were showed more than the average value of Shannon’s diversity index. Higher PCV and GCV recorded for several traits viz., tree volume followed by aril weight, number of fruits per branch, aril/seed weight ratio, trunk girth, TSS acid ratio, aril thickness, number of days from panicle initiation to flowering, titratable acidity, width of inflorescence, length of inflorescence, petiole length, fruit weight, plant height, crown diameter and rachis length. High heritability estimates coupled with high genetic advance as % of mean were recorded for the traits viz., plant height, trunk girth, crown diameter, tree volume, rachis and petiole length, number of days from panicle initiation to flowering, length and width of inflorescence, number of fruits per bunch, fruit, aril and seed weight, aril thickness, fruit colour-a, titratable acidity and TSS acid ratio which is indicative of additive gene action and selection based on these traits would be more reliable. According to the Mahalanobis D2 statistic, twenty diverse genotypes were grouped into eight groups. The presence of genetic divergence was also tested in cluster means by the significant amount of variability for various variables. Therefore, this study’s findings imply that these genotypes have variability in terms of fruit quality traits, yield and traits that contribute to yield, and other agronomic traits that could be useful in future crop improvement initiatives.

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References

  • Alam K, Singh MK, Kumar M, Singh A, Kumar V, Ahmad M, Keshari D (2020) Estimation of genetic variability, correlation and path coefficient in okra (Abelmoschus esculentus (L.) Moench). J Pharmacogn Phytochem 9(5):1484–1487

    Google Scholar 

  • Alcasid CE, Gueco LS, Valencia LD (2015) Diversity analysis based on morphological traits of different mango accessions collected from selected areas in the Philippines. Asian J Agri F Sci.

  • Arora RK, Rao VR, and Rao AN (1996) Status Report on genetic resources of litchi in China. IGPRI Regional Office for Asia, the Pacific and Oceanic, Singapur, pp1–18.

  • Arunachalam V (1981) Genetic distance in plant breeding. Indian J Genet Plant Breed 41:226–236

    Google Scholar 

  • Bailey-Serres J, Parker JE, Ainsworth EA, Oldroyd GE, Schroeder JI (2019) Genetic strategies for improving crop yields. Nature 575:109–118. https://doi.org/10.1038/s41586-019-1679-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Benbrahim N, Mentag R, Elghzaoui Y, Triqui AZ, Gmouh S, ES-Safi N, Taghouti M (2019) Fruits morphological qualitative traits, biochemical components and pungency strength of spicy pepper from Maleh valley in Morocco. J Plant Sci 7:29–43. https://doi.org/10.13189/ujps.2019.070301

    Article  Google Scholar 

  • Burton GW (1952) Quantitative inheritance in grasses. Pro VI Int Grassl Cong, 277–283.

  • Chen H, He X, Luo C, Zhu J, Li F (2010) Analysis on the genetic diversity of 24 longan (Dimocarpus longan) accessions by SCoT markers. Acta Hortic Sin 37(10):1651–1654

    CAS  Google Scholar 

  • Cheng A, Yan H, Han C, Wang W, Tian Y, Chen X (2014) Polyphenols from blueberries modulate inflammation cytokines in LPS-induced RAW264 7 macrophages. Int J Biol Macromol 1(69):382–387. https://doi.org/10.1016/j.ijbiomac.2014.05.071

    Article  CAS  Google Scholar 

  • Cronje RB, Sivakumar D, Mostert PG, Korsten L (2009) Effect of different preharvest treatment regimes on fruit quality of litchi cultivar ‘Maritius.’ J Plant Nutri 32:19–29. https://doi.org/10.1080/01904160802530987

    Article  CAS  Google Scholar 

  • Dabholkar AR (1992). Elements of biometrical genetics. Concept Publishing Company, (Eds.), New Dehli. p. 431.

  • Das SS, Kishore K, Lenka D, Dash DK, Samant D, Panda CM, Samal KC, Sahoo SC, Dash SN (2021) Studies on genetic variability, heritability and character association of yield and quality traits in mango germplasm in eastern tropical region of India. Agril Res J 58(6):998–1005. https://doi.org/10.5958/2395-146X.2021.00141.1

    Article  Google Scholar 

  • Freed M (1966) Methods of Vitamin Assay. 3rd edn, The Association of Vitamin Chemists, Inc., J. Wiley, Interscience Publishers, New York, pp. 287–344

  • Garg S, Sharma G, Lata S, Devi I (2015) Genetic divergence analysis for vegetative, flowering, fruit quality and yield characters in strawberry, Fragaria x ananassa Duch. Int J Farm Sci 5(4):145–149

    Google Scholar 

  • Gill MS, Navprem S (2015) Genetic parameters, character association and path analysis for fruit yield and its component characters in mango (Mangifera indica L.). Indian J Plant Genet Res 28(3):292–295. https://doi.org/10.5958/0976-1926.2015.00037.6

    Article  Google Scholar 

  • Gupta N, Gill MI, Arora NK (2017) Cluster analysis for fruit yield components in grapes. Electron J Plant Breed 8(1):306–310. https://doi.org/10.5958/0975-928X.2017.00044.8

    Article  Google Scholar 

  • Hanson CH, Robinson HF, Comstock RE (1956) Biometrical studies of yield in segregating populations of Korean lespedeza 1. J Agron 48(6):268–272

    Article  Google Scholar 

  • Huang S, Han D, Wang J, Guo D, Li J (2021) Floral induction of longan (Dimocarpus longan) by potassium chlorate: application, mechanism, and future perspectives. Front Plant Sci 12:670587. https://doi.org/10.3389/fpls.2021.670587

    Article  PubMed  PubMed Central  Google Scholar 

  • Indian G, Sankaranarayanan R, Murugesan S, Rajangam J (2019) Assessment of genetic divergence using Mahalanobis D2 analysis in mango. J Agric Ecol 7:38–46

    Article  Google Scholar 

  • IPGRI (2002) Descriptors for Litchi (Litchi chinensis). International Plant Genetic Resources Institute, Rome, Italy.

  • Jia-xin F, Ying W, Jia Z, Hai-yan Z, Sui-sheng H, You-li H, Gui-bing H, Cheng-ming L (2011) Genetic diversity of germplasm resources of Litchi and Longan using SSR analysis. Acta Hort 918:363. https://doi.org/10.17660/ActaHortic.2011.918.47

    Article  Google Scholar 

  • Johnson HW, Robinson HF, Comstock RE (1955) Estimates of genetic and environmental variability in soybeans. Agron J 47:314–318

    Article  Google Scholar 

  • Khurshid S, Ahmad I, Anjum MA (2004) Genetic diversity in different morphological characteristics of litchi (Litchi chinensis Sonn). Int J Agric Biol 6:1062–1065

    Google Scholar 

  • Kumari A, Mankar A, Mir H (2017) Genetic Variability and Heritability among the different Traits in Litchi (Litchi chinensis Sonn.) Hybrids. Indian J Ecol 44:484–487

    Google Scholar 

  • Lal N, Singh A, Kumar A, Marboh ES, Gupta AK, Pandey SD, Nath V (2022) Genetic variability, correlation and path-coefficient studies in litchi (Litchi chinensis Sonn) for plant growth, panicle and yield attributes. Int J Bio-Resour Stress Manag 13:29–36. https://doi.org/10.23910/1.2022.2640

    Article  CAS  Google Scholar 

  • Lal N, Pandey SK, Pandey SD, Nath V (2023) Genetic diversity and grouping of litchi genotypes based on 83 qualitative and quantitative traits. Erwerbs-Obstbau 65:1003–1012. https://doi.org/10.1007/s10341-022-00747-x

    Article  CAS  Google Scholar 

  • Leenhouts PW (1971) A revision of dimocarpus (Sapindaceae). Blumea-Biod, Evol Biogeo of Plants 19(1):113–131

    Google Scholar 

  • Lin T, Lina Y, Ishikib K (2005) Genetic diversity of Dimocarpus longan in China revealed by AFLP markers and partial rbcL gene sequences. Sci Hortic 103:489–498. https://doi.org/10.1016/j.scienta.2004.08.005

    Article  CAS  Google Scholar 

  • Lipi LF, Hasan MJ, Akter A, Quddus MR, Biswas PL, Ansari A, Akter S (2020) Genetic variation, heritability and genetic advance in some promising rice hybrids. SAARC J Agri 18:39–49. https://doi.org/10.3329/sja.v18i2.51107

    Article  Google Scholar 

  • Majumder DA, Hassan L, Rahim MA, Kabir MA (2012) Correlation and path coefficient analysis of mango (Mangifera indica L.). Bangladesh J Agric Res 37(3):493–503

    Article  Google Scholar 

  • Marboh ES, Gupta AK, Gyanesh K, Singh M, Singh A, Nath V (2018) Genetic variability, heritability and genetic advance in litchi (Litchi chinensis). Indian J Agric Sci 88:1510–1514

    Article  Google Scholar 

  • Mariana BD, Sugiyatno A and Supriyanto A (2011) Genetic diversity of local accessions of Dimocarpus longan revealed by ISSR markers. Buletin Plasma Nutfah Vol.17 No.1 Th.

  • Mei ZQ, Fu SY, Yu HQ, Yang LQ, Duan CG, Liu XY, Gong S, Fu JJ (2014) Genetic characterization and authentication of Dimocarpus longan Lour. using an improved RAPD technique. Genet Mole Res 13:1447–1455. https://doi.org/10.4238/2014.March.6.3

    Article  CAS  Google Scholar 

  • Mir JI, Ahmed N, Singh DB, Padder BA, Shafi W, Zaffer S, Hamid A, Bhat HA (2017) Diversity evaluation of fruit quality of apple (Malus × domestica Borkh.) germplasm through cluster and principal component analysis. Indian J Plant Physiol. https://doi.org/10.1007/s40502-017-0298-8

    Article  Google Scholar 

  • Mishra PK, Ram RB, Kumar N (2015) Genetic variability, heritability, and genetic advance in strawberry (Fragaria × ananassa Duch.). Turk J Agric for 39(3):451–458. https://doi.org/10.3906/tar-1408-99

    Article  CAS  Google Scholar 

  • Mukhopadhyay T, Bhattacharjee S (2016) Genetic diversity: importance and measurements. conserving biological diversity: a multiscaled approach. Res India Publ, New Delhi 2016:251–295

    Google Scholar 

  • Panse VG, Sukhatme PV (1954) Statistical methods for agricultural workers. Statistical methods for agricultural workers

  • Park SJ, Park DH, Kim DH, Lee S, Yoon BH, Jung WY, Lee KT, Cheong JH, Ryu JH (2010) The memory-enhancing effects of Euphoria longan fruit extract in mice. J Ethnopharmacol 128(1):160–165. https://doi.org/10.1016/j.jep.2010.01.001

    Article  PubMed  Google Scholar 

  • Patel RK, Maiti CS, Deka BC, Vermav VK, Deshmukh NA, Verma MR (2015) Genetic variability, character association and path coefficient study in guava (Psidium guajava L.) for plant growth, floral and yield attributes. Int J Bio-Resour Stress Manag 4:457–466. https://doi.org/10.5958/0976-4038.2015.00068.8

    Article  Google Scholar 

  • Perveen N, Cholin SS, Hipparagi K, Murthy BN, Peerjade D (2018) Genetic variability studies in pomegranate. Indian J Hortic 75(3):355–361. https://doi.org/10.5958/0974-0112.2018.00062.2

    Article  Google Scholar 

  • Puri RK (2001) Local knowledge and manipulation of the fruit ‘mata kucing’ (Dimocarpus longan) in East Kalimantan. In: Victor M, Barash A (eds) Cultivating forests: alternative forest management practices and techniques for community forestry. RECOFTC, Bangkok, pp 98–110

    Google Scholar 

  • Qiu DL (2012) Longan production and research in China. IV International Symposium on Lychee, Longan and Other Sapindaceae Fruits 1029:39–46

    Google Scholar 

  • Qiying LI, Fang LI, Rupeng CA, Lei ZH, Yao LI, Huanling LI, Jiabao WA (2023) Diversity analysis of leaf traits of litchi genetic resources in Hainan. J Tropic Bio 14(6):628–635. https://doi.org/10.15886/j.cnki.rdswxb.20220126

    Article  Google Scholar 

  • Raina D, Dhillon WS, Gill PP, Singh NP (2015) Assessment of genetic divergence using Mahalanobis D2 and principal component analysis of qualitative and quantitative characters in pomegranate genotypes under sub-tropics. Indian J Horti 72(4):451–456

    Article  Google Scholar 

  • Ranganna S (1997) Handbook of analysis and quality control for fruits and vegetable products (2nd Ed.). Tata Mc Grow Hill Publishing Pvt. Ltd., New Delhi, pp. 3–621.

  • Rao CR (1952) Advanced statistical methods in biometric research. Wiley, New York

    Google Scholar 

  • Rasheed A, Ilyas M, Khan TN, Mahmood A, Riaz U, Chattha MB, Al Kashgry NA, Binothman N, Hassan MU, Wu Z, Qari SH (2023) Study of genetic variability, heritability, and genetic advance for yield-related traits in tomato (Solanum lycopersicon MILL). Front Genet 13:1030309. https://doi.org/10.3389/fgene.2022.1030309

    Article  PubMed  PubMed Central  Google Scholar 

  • Saikia P, Kotoky U (2022) A Study on the morphological characters of elite Litchi (Litchi chinensis) cultivars in Jorhat. Assam J Pharm Innov 11:1934–1938

    Google Scholar 

  • Sankaran M, Dinesh MR, Gowda DC, Venugopalan R (2020) Genetic analysis in mango (Mangifera indica L.) based on fruit characteristics of 400 genotypes. J Hortic Sci 15(2):161–172. https://doi.org/10.24154/jhs.v15i2.944

    Article  Google Scholar 

  • Sharma A, Kumar R, Mankotia MS, Mahajan PK, Belwal OK, Sharma SK (2015a) Genetic divergence evaluation of apple germplasm by D2 multivariate analysis. J Appl Nat Sci 7(2):889–892. https://doi.org/10.31018/jans.v7i2.702

    Article  CAS  Google Scholar 

  • Sharma G, Lata S, Yadav A, Sharma OC, Sharma N (2015b) Assessment of variation in pear genotypes through genetic divergence and cluster analysis using D2 statistics. Afr J Agric Res 10(10):1063–1066. https://doi.org/10.5897/AJAR2014.9063

    Article  Google Scholar 

  • Singh BD (2000) Plant breeding: interrelationships between yield and yield components in mung bean. Indian J Genet Plant Breed 30:244–250

    Google Scholar 

  • Singh K, Choudhary BM, Shanker R, Jain BP (1999) Studies on the physical changes in Litchi fruits during growth and development under Ranchi condition. Prog Hortic 3:151–155

    Google Scholar 

  • Singh D, Gill MIS, Boora RS, Arora NK (2015) Estimates of genetic variability, heritability, genetic advance, correlation coefficients and their prospects for crop improvement in guava (Psidium guajava L). J Appl Hortic 17:76–78. https://doi.org/10.37855/jah.2015.v17i01.15

    Article  Google Scholar 

  • Singh G, Nath V, Pandey SD and Ray PK (2011) Good Management Practices in litchi. Ministry of Agriculture, Govt. of India and National Research Centre on Litchi, Mushahari, Muzaffrpur.

  • Sinha S, Thakur DS, Mishra PK, Sinha R (2016) D2-analysis suggests wider genetic divergence in ysis suggests wider genetic divergence in pomegrana pomegranate genotypes TE genotypes. The Bioscan 11(2):1011–1015

    Google Scholar 

  • Suiubon S, Supapvanich S (2017) Promyou S (2017) Postharvest quality maintenance of longan fruit by ultra violet-C incorporated with salicylic acid application. Emir J Food Agric 3:179–187. https://doi.org/10.9755/ejfa.2016-09-1269

    Article  Google Scholar 

  • Sundharaiya K, Thangaselvabai T, Sathish G, Mohanalakshmi M, Sivakumar V (2022) D2 analysis in avocado (Persea americana Mill). J Pharm Innov 11(1):1916–1919

    CAS  Google Scholar 

  • Supriya SM, Kulkarni VV, Lokesha R, Govindappa MR (2016) Genetic variability studies for yield and yield components in sunflower (Helianthus annuus L.). Electron J Plant Breed 7:737–741. https://doi.org/10.5958/0975-928X.2016.00096.X

    Article  Google Scholar 

  • Wall MM (2006) Ascorbic acid and mineral composition of longan (Dimocarpus longan), lychee (Litchi chinensis) and rambutan (Nephelium lappaceum) cultivars grown in Hawaii. J Food Compost Anal 19(6–7):655–663. https://doi.org/10.1016/j.jfca.2005.12.001

    Article  CAS  Google Scholar 

  • Wangchu L, Tamut G, Singh B, Singh SR, Singh S (2017) Studies on genetic variability of pummelo (Citrus grandis L.) in East Siang District of Arunachal Pradesh. India. Int J Basic Appl Biol 4(2):64–73

    Google Scholar 

  • Weiping T, Heqiang H, Qiuming Z, Jianguang L, Birong Z (2003) Studies on the genetic diversity and relationship of longan cultivars by AFLP analysis. Acta Hortic Sin 30(03):272

    Google Scholar 

  • Wen-shun HU, Ai-ping H, Fan J, Ji-mou J, Xiu-ping CH, Shao-quan Z (1899) Identification and genetic diversity of reciprocal hybrids in longan (Dimocarpus longan) by SSR. Acta Hortic Sin 42(10):1899

    Google Scholar 

  • Westwood MN, Reimer FC, Quackenbush VL (1963) Long term yield as related to ultimate tree size of three pear varieties grown on rootstocks of five Pyrus species. in proc. Am Soc Horticult Sci 82:103–113

    Google Scholar 

  • Wu J, Zhang C, Chen J, Cai C, Wang L, Fu D, Ou L (2016) Morphological diversity within litchi (Litchi chinensis Sonn.) based on leaf and branch traits. Sci Hortic 207:21–27. https://doi.org/10.1016/j.scienta.2016.05.004

    Article  Google Scholar 

  • Yang WH, Zhu XC, Bu JH, Hu GB, Wang HC, Huang XM (2009) Effects of bagging on fruit development and quality in cross-winter off-season longan. Sci Hortic 120:194–200. https://doi.org/10.1016/j.scienta.2008.10.009

    Article  Google Scholar 

  • Zeng L, Hong Z, Lin W, Zheng J, Wu S (2009) ISSR analysis of germplasm in longan. J Fujian Agric for Uni (nat Sci Ed) 38(3):238–242

    Google Scholar 

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Acknowledgements

The funding assistance for this research was provided by the Indian Council of Agricultural Research (ICAR) through the ICAR-PG Scholarship. The authors express their gratitude to ICAR-National Research Centre on Litchi, located in Muzaffarpur, Bihar, for their provision of materials and essential research facilities.

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Ajay Kumar conducted the experiment and authored the main manuscript text. Dr. Alok Kumar Gupta provided significant guidance and provided necessary facilities in his lab for the smooth conduct of research. He also assisted in preparing the manuscript draft. Dr. Neeharika Kanth provided guidance for the experiment and contributed to the preparation of the manuscript draft. Sudheer Kumar Yadav prepared Figure 1 and assisted in the data analysis. Dr. ES Marboh provided facilities in his lab for conducting the experiment. All authors reviewed the manuscript.

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Correspondence to A. K. Gupta.

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Kumar, A., Gupta, A.K., Kanth, N. et al. Assessment of variability and genetic divergence of longan genotypes (Dimocarpus longan Lour.) based on qualitative and quantitative traits. Euphytica 220, 72 (2024). https://doi.org/10.1007/s10681-024-03314-5

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