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A new dagger nematode, Xiphinema tica n. sp. (Nematoda: Longidoridae), from Costa Rica with updating of the polytomous key of Loof and Luc (1990)

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Abstract

A new dagger nematode, Xiphinema tica n. sp., is described and illustrated from several populations extracted from soil associated with several crops and wild plants in Costa Rica. The new dagger nematode is characterised by a moderate body size (3276–4240 μm), a rounded lip region, ca 13.5 μm wide, separated from body contour by a shallow depression, amphidial fovea large, stirrup-shaped, a moderately long odontostyle ca 135 μm long, stylet guiding ring located at ca 122 μm from anterior end, vulva almost equatorial (50–54%), well-developed Z-organ, with heavy muscularised wall containing in the most of specimens observed two moderately refractive inclusions variable in shape (from round to star-shaped), with uterine spines and crystalloid bodies; female tail short, dorsally convex-conoid, with rounded end and a small peg, with a c’ ratio ca 0.8, bearing two or three pairs of caudal pores and male absent. The unique and novel uterine differentiation based on the coexistence of a well-developed Z-organ mixed with uterine spines and crystalloid bodies in Xiphinema prompted us to update and include this combination of characters in the polytomous key of Loof and Luc (1990). Integrative diagnosis was completed with molecular data obtained, using D2-D3 expansion segments of 28S rDNA, ITS1-rDNA, partial 18S–rDNA and the partial mitochondrial gene cytochrome c oxidase subunit 1 (coxI). The phylogenetic relationships of this species with other Xiphinema spp. indicated that X. tica n. sp. was monophyletic to the other species from the morphospecies Group 4, Xiphinema oleae.

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Notes

  1. The species epithet refers to Costa Rica, the geographic origin of the nematode.

References

  • Archidona-Yuste, A. J., Navas-Cortés, J. A., Cantalapiedra-Navarrete, C., Palomares-Rius, J. E., & Castillo, P. (2016a). Remarkable diversity and prevalence of dagger nematodes of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) in olives revealed by integrative approaches. PloS One, 11, e0165412. doi:10.1371/journal.pone.0165412.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Archidona-Yuste, A. J., Navas-Cortés, J. A., Cantalapiedra-Navarrete, C., Palomares-Rius, J. E., & Castillo, P. (2016b). Molecular phylogenetic analysis and comparative morphology resolve two new species of olive-tree soil related dagger nematodes of the genus Xiphinema (Dorylaimida: Longidoridae) from Spain. Invertebrate Systematics, 30, 547–565.

    Google Scholar 

  • Archidona-Yuste, A., Navas-Cortés, J. A., Cantalapiedra-Navarrete, C., Palomares-Rius, J. E., & Castillo, P. (2016c). Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers. Zoological Journal of the Linnean Society, 176, 231–265.

    Google Scholar 

  • Barsi, L., & De Luca, F. (2008). Morphological and molecular characterization of two putative Xiphinema americanum-group species, X. parasimile and X. simile (Nematoda: Dorylaimida) from Serbia. Nematology, 10, 15–25.

    CAS  Google Scholar 

  • Bleve-Zacheo, T., Castellano, M. A., & Lamberti, F. (1976). Preliminary studies on the ultrastructure of the female gonad of Xiphinema index and X. mediterraneum (Nematoda: Longidoridae). Nematologia Mediterranea, 4, 41–55.

    Google Scholar 

  • Castillo, P., Vovlas, N., Subbotin, S., & Troccoli, A. (2003). A new root-knot nematode, Meloidogyne baetica n. sp. (Nematoda: Heteroderidae), parasitizing wild olive in southern Spain. Phytopathology, 93, 1093–1102.

    PubMed  Google Scholar 

  • Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540–552.

    CAS  PubMed  Google Scholar 

  • Cherry, T., Szalanski, A. L., Todd, T. C., & Powers, T. O. (1997). The internal transcribed spacer region of Belonolaimus (Nemata: Belonolaimidae). Journal of Nematology, 29, 23–29.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Coolen, W. A. (1979). Methods for extraction of Meloidogyne spp. and other nematodes from roots and soil. In F. Lamberti & C. E. Taylor (Eds.), Root-knot nematodes (Meloidogyne species). Systematics, biology and control (pp. 317–329). New York: Academic Press.

    Google Scholar 

  • Coomans, A. (1964). Structure of the female gonads in members of the Dorylaimina. Nematologica, 10, 601–622.

    Google Scholar 

  • Coomans, A., Huys, R., Heyns, J., & Luc, M. (2001). Character analysis, phylogeny, and biogeography of the genus Xiphinema Cobb, 1973 (Nematoda, Longidoridae) (Vol. 287). Tervuren, Belgique: Annales du Musée Royal de l’Afrique Centrale (Zoologie).

    Google Scholar 

  • Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2012). jModelTest 2: More models, new heuristics and parallel computing. Nature Methods, 9, 772.

    CAS  PubMed  PubMed Central  Google Scholar 

  • De Ley, P., Félix, M. A., Frisse, L. M., Nadler, S. A., Sternberg, P. W., & Thomas, K. W. (1999). Molecular and morphological characterisation of two reproductively isolated species with mirror-image anatomy (Nematoda: Cephalobidae). Nematology, 1, 591–612.

    CAS  Google Scholar 

  • De Luca, F., Reyes, A., Grunder, J., Kunz, P., Agostinelli, A., De Giorgi, C., & Lamberti, F. (2004). Characterization and sequence variation in the rDNA region of six nematode species of the genus Longidorus (Nematoda). Journal of Nematology, 36, 147–152.

    CAS  PubMed  PubMed Central  Google Scholar 

  • De Luca, F., Archidona-Yuste, A., Troccoli, A., Fanelli, E., Vovlas, N., Trisciuzzi, N., & Castillo, P. (2014). Redescription and molecular characterisation of Xiphinema barense Lamberti et al., 1986 (Nematoda: Longidoridae) from wild olive trees in southern Italy. Nematology, 17, 1079–1089.

    Google Scholar 

  • Decraemer, W., & Robbins, R. T. (2007). The who, what and where of Longidoridae and Trichodoridae. Journal of Nematology, 39, 295–297.

    PubMed  PubMed Central  Google Scholar 

  • Doucet, M. E., Ferraz, L. C. C. B., Magunacelaya, J. C., & Brown, D. J. F. (1998). The occurrence and distribution of longidorid nematodes in Latin America. Russian Journal of Nematology, 6, 111–128.

    Google Scholar 

  • Flegg, J. J. M. (1967). Extraction of Xiphinema and Longidorus species from soil by a modification of Cobb’s decanting and sieving technique. Annals of Applied Biology, 60, 429–437.

    Google Scholar 

  • Geraert, E., Grootaert, P., & Decraemer, W. (1980). Structure of the female reproductive system in some Dorylaimida and Enoplida (Nematoda). Nematologica, 26, 255–271.

    Google Scholar 

  • Gutiérrez-Gutiérrez, C., Palomares-Rius, J. E., Cantalapiedra-Navarrete, C., Landa, B. B., Esmenjaud, D., & Castillo, P. (2010). Molecular analysis and comparative morphology to resolve a complex of cryptic Xiphinema species. Zoological Scripta, 39, 483–498.

    Google Scholar 

  • Gutiérrez-Gutiérrez, C., Cantalapiedra-Navarrete, C., Decraemer, W., Vovlas, N., Prior, T., Palomares-Rius, J. E., & Castillo, P. (2012). Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology. European Journal of Plant Pathology, 134, 561–597.

    Google Scholar 

  • Gutiérrez-Gutiérrez, C., Cantalapiedra-Navarrete, C., Montes-Borrego, M., Palomares-Rius, J. E., & Castillo, P. (2013a). Molecular phylogeny of the nematode genus Longidorus (Nematoda: Longidoridae) with description of three new species. Zoological Journal of the Linnean Society, 167, 473–500.

    Google Scholar 

  • Gutiérrez-Gutiérrez, C., Cantalapiedra-Navarrete, C., Remesal, E., Palomares-Rius, J. E., Navas-Cortés, J. A., & Castillo, P. (2013b). New insight into the identification and molecular phylogeny of dagger nematodes of the genus Xiphinema (Nematoda: Longidoridae) with description of two new species. Zoological Journal of the Linnean Society, 169, 548–579.

    Google Scholar 

  • Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.

    CAS  Google Scholar 

  • He, Y., Subbotin, S., Rubtsova, T. V., Lamberti, F., Brown, D. J. F., & Moens, M. (2005). A molecular phylogenetic approach to Longidoridae (Nematoda: Dorylaimida). Nematology, 7, 111–124.

    CAS  Google Scholar 

  • Holterman, M., Van Der Wurff, A., Van Den Elsen, S., Van Megen, H., Bongers, T., Holovachov, O., Bakker, J., & Helder, J. (2006). Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Phylogenetics and Evolution, 23, 1792–1800.

    CAS  Google Scholar 

  • Jairajpuri, M. S., & Ahmad, W. (1992). Dorylaimida. Freeliving, predaceous and plant-parasitic nematodes (458 pp). New Delhi: India, Oxford & IBH Publishing Co.

    Google Scholar 

  • Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment 542 software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30, 772–780.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kruger, J. C. D. W. (1988). The uterine differentiation in Xiphinema. Phytophylactica, 20, 233–251.

    Google Scholar 

  • Lamberti, F., & Tarjan, A. C. (1974). Xiphinema costaricense n. sp. (Longidoridae, Nematoda) a new species of dagger nematode from Costa Rica. Nematologia Mediterranea, 2, 1–11.

    Google Scholar 

  • Lamberti, F., Molinari, S., Moens, M., & Brown, D. J. F. (2000). The Xiphinema americanum group. I. Putative species, their geographical occurrence and distribution, and regional polytomous identification keys for the group. Russian Journal of Nematology, 8, 65–84.

    Google Scholar 

  • Lamberti, F., De Luca, F., Molinari, S., Duncan, L. W., Agostinelli, A., Coiro, M. I., Dunn, D., & Radicci, V. (2002). Xiphinema chambersi and Xiphinema naturale sp. n., two monodelphic Longidorids (Nematoda, Dorylaimida) from Florida. Nematologia Mediterranea, 30, 3–10.

    Google Scholar 

  • Lazarova, S. S., Malloch, G., Oliveira, C. M. G., Hübschen, J., & Neilson, R. (2006). Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology, 38, 404–410.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Loof, P. A. A. (1982). Two new species of Longidoridae (Dorylaimida) from Saudi Arabia. Nematologica, 28, 307–317.

    Google Scholar 

  • Loof, P. A. A., & Coomans, A. (1972). The oesophageal gland nuclei of Longidoridae (Dorylaimida). Nematologica, 18, 213–233.

    Google Scholar 

  • Loof, P. A. A., & Luc, M. (1990). A revised polytomous key for the identification of species of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the X. americanum-group. Systematic Parasitology, 16, 36–66.

    Google Scholar 

  • Loof, P. A. A., & Luc, M. (1993). A revised polytomous key for the identification of species of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the X. americanum-group: Supplement 1. Systematic Parasitology, 24, 185–189.

    Google Scholar 

  • Loof, P. A. A., Luc, M., & Baujard, P. (1996). A revised polytomous key for the identification of species of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the X. americanum-group: Supplement 2. Systematic Parasitology, 33, 23–29.

    Google Scholar 

  • Luc, M. (1958). Xiphinema of West Africa: Description of five new species (Nematoda: Dorylamidae). Nematologica, 3, 57–72.

    Google Scholar 

  • Luc, M. (1961). Xiphinema de l’ouest African (Nematoda-Dorylaimoidea). Nematologica, 6, 107–122.

    Google Scholar 

  • Luc, M. (1973). Redescription of Xiphinema hallei Luc, 1958 and description of six new species of Xiphinema Cobb, 1893 (Nematoda: Dorylaimida). Cahiers ORSTOM, séries Biologie, 21, 45–65.

    Google Scholar 

  • Luc, M., & Dalmasso, A. (1963). Trois Nouveaux Xiphinema associes a la vigne (Nematoda-Dorylaimidae). Nematologica, 9, 531–541.

    Google Scholar 

  • Luc, M., Coomans, A., Loof, P. A. A., & Baujard, P. (1998). The Xiphinema americanum group (Nematoda: Longidoridae). 2. Observations on Xiphinema brevicollum Lordello & Da Costa, 1961 and comments on the group. Fundamental and Applied Nematology, 21, 475–490.

    Google Scholar 

  • Mincheva, Y., Lazarova, S., & Peneva, V. (2008). Xiphinema pirinense n. sp. (Nematoda: Dorylaimida: Longidoridae), a new species from Bulgaria with a digitate tail. Systematic Parasitology, 70, 215–222.

    PubMed  Google Scholar 

  • Oliveira, C. M. G., Ferraz, L. C. C. B., & Neilson, R. (2006). Xiphinema krugi, species complex or complex of cryptic species? Journal of Nematology, 38, 418–428.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Page, R. D. (1996). TreeView: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12, 357–358.

    CAS  PubMed  Google Scholar 

  • Palomares-Rius, J. E., Cantalapiedra-Navarrete, C., & Castillo, P. (2014). Cryptic species in plant-parasitic nematodes. Nematology, 16, 1105–1118.

    Google Scholar 

  • Peraza-Padilla, W., Archidona-Yuste, A., Cantalapiedra-Navarrete, C., Zamora-Araya, T., Palomares-Rius, J. E., & Castillo, P. (2016a). Molecular characterization and distribution of the needle nematode Longidorus laevicapitatus Williams, 1959 (Nematoda: Longidaridae) in Costa Rica. European Journal of Plant Pathology, 147, 443–450.

    Google Scholar 

  • Peraza-Padilla, W., Archidona-Yuste, A., Ferris, H., Zamora-Araya, T., Cantalapiedra-Navarrete, C., Palomares-Rius, J. E., Subbotin, S. A., & Castillo, P. (2016b). Molecular characterization of pseudomonodelphic dagger nematodes of the genus Xiphinema Cobb, 1913 (Nematoda: Longidaridae) in Costa Rica, with notes on Xiphinema setariae Tarjan, 1964. European Journal of Plant Pathology, 147, 000–000. doi:10.1007/s10658-016-1124-2.

    Article  CAS  Google Scholar 

  • Robbins, R. T., Brown, D. J., Halbrendt, J. M., & Vrain, T. C. (1996). Compendium of juvenile stages of Xiphinema species (Nematoda: Longidoridae). Russian Journal of Nematology, 4, 163–171.

    Google Scholar 

  • Ronquist, F., & Huelsenbeck, J. P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.

    CAS  Google Scholar 

  • Roshan-Bakhsh, A., Pourjam, E., Pedram, M., Robbins, R. T., & Decraemer, W. (2014). Description of Xiphinema castilloi sp. n. (Dorylaimida: Longidoridae) from Iran and its phylogenetic relationships. Nematology, 16, 359–368.

    Google Scholar 

  • Seinhorst, J.W. (1966). Killing nematodes for taxonomic study with hot f.a. 4:1. Nematologica, 12, 178.

    Google Scholar 

  • Siddiqi, M. R. (1959). Studies on Xiphinema spp. (Nematoda: Dorylaimoidea) from Aligarh (North India), with comments on the genus Longidorus Micoletzky, 1922. Proceedings Helminthological Society of Washington, 26, 151–163.

    Google Scholar 

  • Sturhan, D. (1978). Zwei neue Xiphinema-arten aus Deutschland (Nematoda, Dorylaimida). Nematologica, 24, 19–28.

    Google Scholar 

  • Subbotin, S. A., Rogozhin, E. A., & Chizhov, V. N. (2014). Molecular characterisation and diagnostics of some Longidorus species (Nematoda: Dorylaimida) from Russia and other countries using rRNA genes. European Journal of Plant Pathology, 138, 377–390.

    CAS  Google Scholar 

  • Taylor, C. E., & Brown, D. J. F. (1997). Nematode vectors of plant viruses (296 pp). Wallingford: CABI.

    Google Scholar 

  • Thorne, G. (1939). Notes on free-living and plant parasitic nematodes. Proceedings of the Helminthological Society of Washington, 6, 30–32.

    Google Scholar 

  • Thorne, G., & Allen, M. (1950). Paratylenchus hamatus n. sp. and Xiphinema index n. sp., two nematodes associated with fig roots with a note on Paratylenchus anceps Cobb. Proceedings Helminthological Society of Washington, 17, 27–35.

    Google Scholar 

  • Tzortzakakis, E., Archidona-Yuste, A., Cantalapiedra-Navarrete, C., Nasiou, E., Lazanaki, M., Kabourakis, E., Palomares-Rius, J. E., & Castillo, P. (2014). Integrative diagnosis and molecular phylogeny of dagger and needle nematodes of olives and grapevines in the island of Crete, Greece, with description of Xiphinema cretense n. sp. (Nematoda: Longidoridae). European Journal of Plant Pathology, 140, 563–590.

    CAS  Google Scholar 

  • Tzortzakakis, E., Archidona-Yuste, A., Cantalapiedra-Navarrete, C., Nasiou, E., Palomares-Rius, J. E., & Castillo, P. (2015). Description and molecular characterisation of Xiphinema herakliense n. sp. (Nematoda: Longidoridae) from wild and cultivated olives in Crete. Nematology, 17, 231–245.

    Google Scholar 

  • Van de Velde, M. C., Coomans, A., Heyns, J., Claeys, M., & Hutsebaut, M. (1990a). Ultrastructure of the female gonoduct of Xiphinema meridianum (Nematoda). Revue de Nématologie, 13, 211–223.

    Google Scholar 

  • Van de Velde, M. C., Coomans, A., Heyns, J., Claeys, M., & Hutsebaut, M. (1990b). Ultrastructure of the female gonoduct of Xiphinema theresiae (Nematoda). Revue de Nématologie, 13, 449–461.

    Google Scholar 

  • Vrain, T. C., Wakarchuk, D. A., Levesque, A. C., & Hamilton, R. I. (1992). Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundamental and Applied Nematology, 15, 563–573.

    Google Scholar 

  • Williams, T. D. (1961). Xiphinema bakeri n. sp. (Nematoda: Longidoridae) from the Fraser River Valley, British Columbia, Canada. Canadian Journal of Zoology, 39, 407–412.

    Google Scholar 

  • Zasada, I. A., Peetz, A., Howe, D. K., Wilhelm, L. J., Cheam, D. R., & Smythe, A. B. (2014). Using mitogenomic and nuclear ribosomal sequence data to investigate the phylogeny of the Xiphinema americanum species complex. PloS One, 9, e90035. doi:10.1371/journal.pone.0090035.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zullini, A. (1973). Some soil and freshwater nematodes from Chiapas (Mexico). Academia Nazionale dei Lincei. Quaderno, 171, 73–96.

    Google Scholar 

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Acknowledgements

Research was supported by grant of Universidad Nacional and FIDA (Fondo Institucional al Desarrollo Académico) from Costa Rica. The fourth author is a recipient of a “Juan de La Cierva” contract from Ministerio de Economía y Competitividad of Spain. The authors thank J. Martín Barbarroja and G. León Ropero from IAS-CSIC for the excellent technical assistance, and anonymous reviewers and editor for their valuable suggestions to improve the manuscript.

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Peraza-Padilla, W., Cantalapiedra-Navarrete, C., Zamora-Araya, T. et al. A new dagger nematode, Xiphinema tica n. sp. (Nematoda: Longidoridae), from Costa Rica with updating of the polytomous key of Loof and Luc (1990). Eur J Plant Pathol 150, 73–90 (2018). https://doi.org/10.1007/s10658-017-1253-2

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