Skip to main content
Log in

An extended river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes

  • Published:
Chromosome Research Aims and scope Submit manuscript

Abstract

We report an extended river buffalo (Bubalus bubalis, 2n = 50; BBU) cytogenetic map including 388 loci, of which 68 have been FISH-mapped on autosomes in the present study. Ovine and caprine BAC clones containing both type I loci (known genes) and type II loci (simple sequence repeats (SRs), microsatellite marker, sequence-tagged sites (STSs)), previously assigned to sheep chromosomes, have been localized on R-banded river buffalo chromosomes (BBU), which expands the cytogenetic map of this important domestic species and increases our knowledge of the physical organization of its genome. The loci mapped in the present study correspond to loci already localized on homoeologous cattle (and sheep) chromosomes and chromosome bands, further confirming the high degree of chromosome homoeologies among bovids. The comparison of the integrated cytogenetic maps of BBU2p/BBU10 and BBU5p/BBU16 with those of human chromosomes (HSA) 6 and 11, respectively, identified, at least, nine conserved chromosome segments in each case and complex rearrangements differentiating river buffalo (and cattle) and human chromosomes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Amaral MEJ, Owens KE, Elliot JS et al. (2007) Construction of a river buffalo (Bubalus bubalis) whole-genome radiation hybrid panel and preliminary RH mapping of chromosomes 3 and 10. Anim Genet 38: 311–314.

    Article  PubMed  CAS  Google Scholar 

  • Antonacci R, Maccarelli G, Di Meo GP et al. (2007) Molecular in situ hybridization analysis of sheep and goat BAC clones identifies the transcriptional orientation of T cell receptor gamma genes on chromosome 4 in bovids. Vet Res Commun 31: 977–983.

    Article  PubMed  CAS  Google Scholar 

  • Borghese A, Manzi M (2005) Buffalo population and strategies in the world. In: Borghese A, ed. Buffalo Production and Research, REU technical series 67. FAO, Regional Office for Europe, Rome, pp 1–39.

  • CSKBB (1994) Standard karyotype of the river buffalo (Bubalus bubalis L., 2n = 50). Report of the committee for the standardization of banded karyotypes of the river buffalo (L Iannuzzi, coordinator). Cytogenet Cell Genet 67: 02–113.

    Google Scholar 

  • Chowdhary BP, Fronike L, Gustavsson I, Scherthan H (1996) Comparative analysis of the cattle and human genomes: detection of ZOO-FISH and gene mapping-based chromosomal homologies. Mamm Genome 7: 297–302.

    Article  PubMed  CAS  Google Scholar 

  • Di Meo GP, Perucatti A, Floriot S et al. (2005a) Chromosome evolution and improved cytogenetic maps of the Y chromosome in cattle, zebu, river buffalo, sheep and goat. Chromosome Res 13: 349–355.

    Article  PubMed  Google Scholar 

  • Di Meo GP, Perucatti A, Uboldi C et al. (2005b) Comparative mapping of the fragile histidine triad (FHIT) gene in cattle, river buffalo, sheep and goat by FISH and assignment to BTA22 by RH-mapping: a comparison with HSA3. Anim Genet 36(4): 363–364.

    Article  PubMed  Google Scholar 

  • Di Meo GP, Gallagher DS, Perucatti A et al. (2006) Mapping of 11 genes by FISH to BTA2, BBU2q, OAR2q and CHI2, and comparison with HSA2q. Anim Genet 37: 299–300.

    Article  PubMed  Google Scholar 

  • Di Meo GP, Perucatti A, Floriot S et al. (2007) An advanced sheep (Ovis aries, 2n = 54) cytogenetic map and assignment of 88 new loci by fluorescent in situ hybridization and R-banding. Anim Genet 38: 233–240.

    Article  PubMed  Google Scholar 

  • Di Meo GP, Perucatti A, Di Palo R et al. (2008) Sex chromosome abnormalities and sterility in river buffalo. Cytogenet Genome Res 120: 127–131.

    Article  PubMed  Google Scholar 

  • Eggen A, Gautier M, Billaut A et al. (2001) Construction and characterization of a bovine BAC library with four genome-equivalent coverage. Genet Select Evol 33: 543–548.

    Article  CAS  Google Scholar 

  • Goldammer T, Weikard R, Miziara MN et al. (2007) A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 7 and comparative mapping to the cattle and human genomes. Cytogenet Genome Res 199: 235–241.

    Article  Google Scholar 

  • Hayes H (1995) Chromosome painting with human chromosome-specific DNA libraries reveals the extent and distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 71: 168–174.

    Article  PubMed  CAS  Google Scholar 

  • Hayes H, Elduque C, Gautier M et al. (2003) Mapping of 195 genes in cattle and updated comparing map with man, mouse, rat and pig. Cytogenet Genome Res 102: 16–24.

    Article  PubMed  CAS  Google Scholar 

  • Ianella P, Venancio LP, Stafuzza NB, Miziara MN et al. (2008) First radiation hybrid map of the river buffalo X chromosome (BBUX) and comparison with BTAX. Anim Genet 39: 196–200.

    Article  PubMed  CAS  Google Scholar 

  • Iannuzzi L, Di Meo GP, Perucatti A, Bardaro T (1998) ZOO-FISH and R-banding reveal extensive conservation of human chromosome regions in euchromatic regions of river buffalo chromosomes. Cytogenet Cell Genet 82: 210–214.

    Article  PubMed  CAS  Google Scholar 

  • Iannuzzi L, Di Meo GP, Perucatti A, Incarnato D (1999) Comparison of the human with the sheep genomes by use of human chromosome-specific painting probes. Mamm Genome 10: 719–723.

    Article  PubMed  CAS  Google Scholar 

  • Iannuzzi L, Di Meo GP, Perucatti A et al. (2001) Comparative FISH-mapping in river buffalo and sheep chromosomes: assignment of forty autosomal type I loci from sixteen human chromosomes. Cytogenet Cell Genet 94: 43–48.

    Article  PubMed  CAS  Google Scholar 

  • Iannuzzi L, Di Meo GP, Perucatti A, et al. (2003a) The river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 64 loci by fluorescence in situ hybridisation and R-banding. Cytogenet Genome Res 102: 65–75.

    Article  PubMed  CAS  Google Scholar 

  • Iannuzzi L, Di Meo GP, Perucatti A et al. (2003b) Comparative FISH-mapping of the survival of motor neuron gene (SMN) in domestic bovids. Cytogenet Genome Res 102: 39–41.

    Article  PubMed  CAS  Google Scholar 

  • ISCNDB (2001) International System for Chromosome Nomenclature of Domestic Bovids. Di Berardino D, Di Meo GP, Gallagher DS, Hayes H, Iannuzzi L (co-ordinator), eds. Cytogenet Cell Genet 92: 283–299.

    Article  Google Scholar 

  • Kierstein G, Iannuzzi L, Silva A, Schneider MP, Baumgartner BG, Brenig B (2003) Assignment of solute carrier family 26 (sulfate transporter), member 2 (SLC26a2) to river buffalo (Bubalus bubalis, 2n = 50) chromosome 9q26 (BBU9q26) by fluorescence in situ hybridisation and R-banding. Cytogenet Genome Res 103: 202A.

    Article  PubMed  CAS  Google Scholar 

  • Perucatti A, Di Meo GP, Vallinoto M et al. (2006) FISH-mapping of LEP and SLC26A2 genes in sheep, goat and cattle R-banded chromosomes: comparison between bovine, ovine and caprine chromosome 4 (BTA4/OAR4/CHI4) and human chromosome 7 (HSA7). Cytogenet Genome Res 115: 7–9.

    Article  PubMed  CAS  Google Scholar 

  • Perucatti A, Di Meo GP, Goldammer T, Incarnato D, Brunner T, Iannuzzi L (2007) Comparative FISH-mapping of twelve loci in river buffalo and sheep chromosomes: comparison with HSA8p and HSA4q. Cytogenet Genome Res 119: 242–244.

    Article  PubMed  CAS  Google Scholar 

  • Schibler L, Vaiman D, Oustry A et al. (1998) Construction and extensive characterization of a goat bacterial artificial chromosome library with threefold genome coverage. Mamm Genome 9: 119–124.

    Article  PubMed  CAS  Google Scholar 

  • Solinas-Toldo S, Lengauer C, Fries R (1995) Comparative genome map of human and cattle. Genomics 27: 489–496.

    Article  PubMed  CAS  Google Scholar 

  • Strafuzza NB, Iannella P, Miziara MN, et al. (2007) Preliminary RH map for river buffalo chromosome 6 (BBU6) and comparison to bovine chromosome 3 (BTA3). Anim Genet 38: 406–409.

    Article  Google Scholar 

  • Vallinoto M, Scheider MP, Silva A, Iannuzzi L, Brenig B (2004) Molecular cloning and analysis of the bubaline leptin gene. Anim Genet 35: 362–363.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to L. Iannuzzi.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Di Meo, G.P., Perucatti, A., Floriot, S. et al. An extended river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes. Chromosome Res 16, 827–837 (2008). https://doi.org/10.1007/s10577-008-1229-3

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10577-008-1229-3

Key words

Navigation