Abstract
Application of long non-coding RNAs (lncRNAs) for modulation of breast cancer (BC) has attracted much attention. Here, we probed into the role and underlying mechanism of long intergenic non-coding RNA 01270 (LINC01270) in BC. With the help of bioinformatics tools, we identified laminin subunit alpha 2 (LAMA2) as a BC-related differentially expressed gene to discern the effect of LAMA2 in BC cells. LAMA2 was initially poorly expressed while LINC01270 was highly expressed in BC. BC cells were subsequently treated with sh-LINC01270 or/and sh-LAMA2 for exploration of their regulatory mechanism in BC, which unfolded that LINC01270 inhibition up-regulated LAMA2 and inactivated the MAPK signaling pathway to suppress malignant characteristics of BC cells. Functional assays demonstrated that LINC01270 bound to DNMT1, DNMT3a, and DNMT3b promoted the methylation of CpG islands in LAMA2 promoter and inhibited the LAMA2 expression. Moreover, our data suggested that LAMA2 suppressed MAPK signaling pathway to inhibit BC cell malignant characteristics. The in vitro results were re-produced with the help of the in vivo experimentations. In conclusion, LINC01270 silencing inhibited the methylation of LAMA2 promoter to suppress the activation of MAPK signaling pathway, which subsequently restrained the BC progression.
Graphical abstract
1, Overexpression of LAMA2 inhibits malignant features of BC cells.
2, LINC01270 promotes LAMA2 promoter methylation by recruiting DNMTs to the LAMA2 promoter region.
3, 5-aza-dc reverses the promotion of LAMA2 promoter methylation by LINC01270.
4, LAMA2 inhibits malignant features of BC cells by suppressing the activation of MAPK signaling pathway.
Similar content being viewed by others
Availability of data and material
The datasets generated/analyzed during the current study are available.
Code availability
Not applicable.
Change history
14 August 2023
A Correction to this paper has been published: https://doi.org/10.1007/s10565-023-09824-7
References
Akram M, Iqbal M, Daniyal M, Khan AU. Awareness and current knowledge of breast cancer. Biol Res. 2017;50(1):33. https://doi.org/10.1186/s40659-017-0140-9.
Bin X, Hongjian Y, Xiping Z, Bo C, Shifeng Y, Binbin T. Research progresses in roles of LncRNA and its relationships with breast cancer. Cancer Cell Int. 2018;18:179. https://doi.org/10.1186/s12935-018-0674-0.
Chen H, Wang X, Guo F, Li P, Peng D, He J. Impact of p38gamma mitogen-activated protein kinase (MAPK) on MDA-MB-231 breast cancer cells using metabolomic approach. Int J Biochem Cell Biol. 2019;107:6–13. https://doi.org/10.1016/j.biocel.2018.11.002.
Diaz D, Prieto A, Reyes E, Barcenilla H, Monserrat J, Alvarez-Mon M. Flow cytometry enumeration of apoptotic cancer cells by apoptotic rate. Methods Mol Biol. 2015;1219:11–20. https://doi.org/10.1007/978-1-4939-1661-0_2.
Duan SG, Cheng L, Li DJ, Zhu J, Xiong Y, Li XW, et al. The role of MAPK-ERK pathway in 67-kDa laminin receptor-induced FasL expression in human cholangiocarcinoma cells. Dig Dis Sci. 2010;55(10):2844–52. https://doi.org/10.1007/s10620-009-1121-9.
Fahad Ullah M. Breast cancer: current perspectives on the disease status. Adv Exp Med Biol. 2019;1152:51–64. https://doi.org/10.1007/978-3-030-20301-6_4.
Islam MS, Ciavattini A, Petraglia F, Castellucci M, Ciarmela P. Extracellular matrix in uterine leiomyoma pathogenesis: a potential target for future therapeutics. Hum Reprod Update. 2018;24(1):59–85. https://doi.org/10.1093/humupd/dmx032.
Jin X, Ge LP, Li DQ, Shao ZM, Di GH, Xu XE, et al. LncRNA TROJAN promotes proliferation and resistance to CDK4/6 inhibitor via CDK2 transcriptional activation in ER+ breast cancer. Mol Cancer. 2020;19(1):87. https://doi.org/10.1186/s12943-020-01210-9.
Klinge CM. Non-coding RNAs in breast cancer: intracellular and intercellular communication. Noncoding RNA. 2018;4(4). https://doi.org/10.3390/ncrna4040040.
Kolak A, Kaminska M, Sygit K, Budny A, Surdyka D, Kukielka-Budny B, et al. Primary and secondary prevention of breast cancer. Ann Agric Environ Med. 2017;24(4):549–53. https://doi.org/10.26444/aaem/75943.
Li N, Zhao Z, Miao F, Cai S, Liu P, Yu Y, et al. Silencing of long non-coding RNA LINC01270 inhibits esophageal cancer progression and enhances chemosensitivity to 5-fluorouracil by mediating GSTP1methylation. Cancer Gene Ther. 2021;28(5):471–85. https://doi.org/10.1038/s41417-020-00232-1.
Liang X, Vacher S, Boulai A, Bernard V, Baulande S, Bohec M, et al. Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer. Breast Cancer Res. 2018;20(1):88. https://doi.org/10.1186/s13058-018-1007-x.
Liang Y, Song X, Li Y, Chen B, Zhao W, Wang L, et al. LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis. Mol Cancer. 2020;19(1):85. https://doi.org/10.1186/s12943-020-01206-5.
Li Y, Ma HY, Hu XW, Qu YY, Wen X, Zhang Y, et al. LncRNA H19 promotes triple-negative breast cancer cells invasion and metastasis through the p53/TNFAIP8 pathway. Cancer Cell Int. 2020;20:200. https://doi.org/10.1186/s12935-020-01261-4.
Lu H, Guo Y, Gupta G, Tian X. Mitogen-activated protein kinase (MAPK): new insights in breast cancer. J Environ Pathol Toxicol Oncol. 2019;38(1):51–9. https://doi.org/10.1615/JEnvironPatholToxicolOncol.2018028386.
McDonald ES, Clark AS, Tchou J, Zhang P, Freedman GM. Clinical diagnosis and management of breast cancer. J Nucl Med. 2016;57(Suppl 1):9S-16S. https://doi.org/10.2967/jnumed.115.157834.
McPherson JR, Ong CK, Ng CC, Rajasegaran V, Heng HL, Yu WS, et al. Whole-exome sequencing of breast cancer, malignant peripheral nerve sheath tumor and neurofibroma from a patient with neurofibromatosis type 1. Cancer Med. 2015;4(12):1871–8. https://doi.org/10.1002/cam4.551.
Ping J, Huang S, Wu J, Bao P, Su T, Gu K, et al. Association between lincRNA expression and overall survival for patients with triple-negative breast cancer. Breast Cancer Res Treat. 2021;186(3):769–77. https://doi.org/10.1007/s10549-020-06021-6.
Shah S, Brock EJ, Jackson RM, Ji K, Boerner JL, Sloane BF, et al. Downregulation of Rap1Gap: a switch from DCIS to invasive breast carcinoma via ERK/MAPK activation. Neoplasia. 2018;20(9):951–63. https://doi.org/10.1016/j.neo.2018.07.002.
Shao G, Fan X, Zhang P, Liu X, Huang L, Ji S. Methylation-dependent MCM6 repression induced by LINC00472 inhibits triple-negative breast cancer metastasis by disturbing the MEK/ERK signaling pathway. Aging. 2021;13(4):4962–75. https://doi.org/10.18632/aging.103568.
Simonova OA, Kuznetsova EB, Poddubskaya EV, Kekeeva TV, Kerimov RA, Trotsenko ID, et al. DNA methylation in the promoter regions of the laminin family genes in normal and breast carcinoma tissues. Mol Biol (Mosk). 2015;49(4):667–77. https://doi.org/10.7868/S0026898415040163.
Todd JR, Ryall KA, Vyse S, Wong JP, Natrajan RC, Yuan Y, et al. Systematic analysis of tumour cell-extracellular matrix adhesion identifies independent prognostic factors in breast cancer. Oncotarget. 2016;7(39):62939–53. https://doi.org/10.18632/oncotarget.11307.
Tomar D, Yadav AS, Kumar D, Bhadauriya G, Kundu GC. Non-coding RNAs as potential therapeutic targets in breast cancer. Biochim Biophys Acta Gene Regul Mech. 2020;1863(4):194378. https://doi.org/10.1016/j.bbagrm.2019.04.005.
Vernier M, McGuirk S, Dufour CR, Wan L, Audet-Walsh E, St-Pierre J, et al. Inhibition of DNMT1 and ERRalpha crosstalk suppresses breast cancer via derepression of IRF4. Oncogene. 2020;39(41):6406–20. https://doi.org/10.1038/s41388-020-01438-1.
Wang L, Wu H, Chu F, Zhang L, Xiao X. Knockdown of circ_0000512 inhibits cell proliferation and promotes apoptosis in colorectal cancer by regulating miR-296–5p/RUNX1 Axis. Onco Targets Ther. 2020;13:7357–68. https://doi.org/10.2147/OTT.S250495.
Wang RQ, Lan YL, Lou JC, Lyu YZ, Hao YC, Su QF, et al. Expression and methylation status of LAMA2 are associated with the invasiveness of nonfunctioning PitNET. Ther Adv Endocrinol Metab. 2019a;10:2042018818821296. https://doi.org/10.1177/2042018818821296.
Wang Y, Fu J, Wang Z, Lv Z, Fan Z, Lei T. Screening key lncRNAs for human lung adenocarcinoma based on machine learning and weighted gene co-expression network analysis. Cancer Biomark. 2019b;25(4):313–24. https://doi.org/10.3233/CBM-190225.
Wu S, Powers S, Zhu W, Hannun YA. Substantial contribution of extrinsic risk factors to cancer development. Nature. 2016;529(7584):43–7. https://doi.org/10.1038/nature16166.
Yongbin Y, Jinghua L, Zhanxue Z, Aimin Z, Youchao J, Yanhong S, et al. TES was epigenetically silenced and suppressed the epithelial-mesenchymal transition in breast cancer. Tumour Biol. 2014;35(11):11381–9. https://doi.org/10.1007/s13277-014-2472-1.
Zhou B, Wang J. Epidermal growth factor-like domain 7 regulates breast cancer cell proliferation and vascular endothelial growth factor expression via the p38MAPK signaling pathway. Am J Transl Res. 2021;13(4):2608–16.
Zimmers SM, Browne EP, Williams KE, Jawale RM, Otis CN, Schneider SS, et al. TROP2 methylation and expression in tamoxifen-resistant breast cancer. Cancer Cell Int. 2018;18:94. https://doi.org/10.1186/s12935-018-0589-9.
Funding
This study was supported by the project of the Shenzhen Science and Technology Commission (JCYJ20190809112803651).
Author information
Authors and Affiliations
Contributions
Shaoying Li, Jiamei Hu, and Guisen Li wrote the paper. Huifen Mai, Yinfei Gao, and Bichan Liang conceived the experiments. Huacong Wu and Jianling Guo analyzed the data. Yuan Duan, Shaoying Li, and and Jiamei Hu collected and provided the sample for this study. All authors have read and approved the final submitted manuscript.
Corresponding author
Ethics declarations
Ethics approval
All patients signed an informed consent form, and the experimentations were ratified by the Ethics Committee of Baoan Maternal and Child Health Hospital, Jinan University, and in light of the Declaration of Helsinki.
Consent to participate
All patients signed an informed consent form.
Consent for publication
Not applicable.
Conflict of interest
The authors declare no competing interests.
Additional information
Publisher's note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Shaoying Li and Jiamei Hu are regarded as co-first authors.
Supplementary Information
Below is the link to the electronic supplementary material.
Supplementary file2
Fig. S1 LAMA2 mRNA and protein expressions in breast cancer samples with different molecular types by RT-qPCR and Western blot. Note: A, RT-qPCR was used to detect the mRNA expression of LAMA2 in breast cancer samples with different molecular types; B: Western blot was used to detect the protein expression of LAMA2 in breast cancer samples with different molecular types; each sample was repeated three times (PNG 299 kb)
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Li, S., Hu, J., Li, G. et al. Epigenetic regulation of LINC01270 in breast cancer progression by mediating LAMA2 promoter methylation and MAPK signaling pathway. Cell Biol Toxicol 39, 1359–1375 (2023). https://doi.org/10.1007/s10565-022-09763-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10565-022-09763-9