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A Simple and Convenient Sticky/Blunt-End Ligation Method for Fusion Gene Construction

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Abstract

Here we present a simple and convenient sticky/blunt-end ligation method for fusion gene construction. The fusion gene is constructed by seamless ligation of 5′-end phosphorylated blunt ends instead of by overlap extension PCR (OE-PCR). Therefore, the challenge of amplifying large DNA fragments (e.g., the large bifunctional enzyme gene constructed by fusion of two monofunctional enzyme genes) by PCR can be avoided. In addition, synthesis of the inner primers for OE-PCR is not necessary, indicating that this method should be especially convenient for construction of fusion genes with various combinations of multiple fragments (e.g., chimeric gene libraries, fusion gene libraries). As a modification of the commonly used fusion gene construction technique, this method may find a wide range of applications in bioscience and biotechnology.

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References

  • Cheo DL, Titus SA, Byrd DR, Hartley JL, Temple GF, Brasch MA (2004) Concerted assembly and cloning of multiple DNA segments using in vitro site-specific recombination: functional analysis of multi-segment expression clones. Genome Res 14:2111–2120

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Cowie A, Cheng J, Sibley CD, Fong Y, Zaheer R, Patten CL, Morton RM, Golding GB, Finan TM (2006) An integrated approach to functional genomics: construction of a novel reporter gene fusion library for Sinorhizobium meliloti. Appl Environ Microbiol 72:7156–7167

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Cranenburgh RM (2004) An equation for calculating the volumetric ratios required in a ligation reaction. Appl Microbiol Biotechnol 65:200–202

    CAS  PubMed  Google Scholar 

  • Duan Z, Li Q, He L, Zhao G, Chen J, Hu S, Liu X (2013) Application of green fluorescent protein-labeled assay for the study of subcellular localization of Newcastle disease virus matrix protein. J Virol Methods 194:118–122

    Article  CAS  PubMed  Google Scholar 

  • Hong SY, Lee JS, Cho KM, Math RK, Kim YH, Hong SJ, Cho YU, Kim H, Yun HD (2006) Assembling a novel bifunctional cellulase-xylanase from Thermotoga maritima by end-to-end fusion. Biotechnol Lett 28:1857–1862

    Article  CAS  PubMed  Google Scholar 

  • Jeong JY, Yim HS, Ryu JY, Lee HS, Lee JH, Seen DS, Kang SG (2012) One-step sequence- and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies. Appl Environ Microbiol 78:5440–5443

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Khandeparker R, Numan MT (2008) Bifunctional xylanases and their potential use in biotechnology. J Ind Microbiol Biotechnol 35:635–644

    Article  CAS  PubMed  Google Scholar 

  • Li MZ, Elledge SJ (2007) Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat Methods 4:251–256

    Article  CAS  PubMed  Google Scholar 

  • Lu P, Feng MG, Li WF, Hu CX (2006) Construction and characterization of a bifunctional fusion enzyme of Bacillus-sourced beta-glucanase and xylanase expressed in Escherichia coli. FEMS Microbiol Lett 261:224–230

    Article  CAS  PubMed  Google Scholar 

  • Seijsing J, Lindborg M, Löfblom J, Uhlén M, Gräslund T (2013) Robust expression of the human neonatal Fc receptor in a truncated soluble form and as a full-length membrane-bound protein in fusion with eGFP. PLoS One 8:e81350

    Article  PubMed Central  PubMed  Google Scholar 

  • Tsien RY (1998) The green fluorescent protein. Annu Rev Biochem 67:509–544

    Article  CAS  PubMed  Google Scholar 

  • Tsuji N, Suzuki K, Kasuga-Aoki H, Matsumoto Y, Arakawa T, Ishiwata K, Isobe T (2001) Intranasal immunization with recombinant Ascaris suum 14-kilodalton antigen coupled with cholera toxin B subunit induces protective immunity to A. suum infection in mice. Infect Immun 69:7285–7292

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Walhout AJ, Temple GF, Brasch MA, Hartley JL, Lorson MA, van den Heuvel S, Vidal M (2000) GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. Methods Enzymol 328:575–592

    Article  CAS  PubMed  Google Scholar 

  • Xu R, Li QQ (2008) Protocol: streamline cloning of genes into binary vectors in Agrobacterium via the Gateway(R) TOPO vector system. Plant Methods 4:4

    Article  PubMed Central  PubMed  Google Scholar 

  • Yang RB, Bi LJ, Zhang XE (2013) A novel T-type overhangs improve the enzyme-free cloning of PCR products. Mol Biotechnol 55:10–16

    Article  PubMed  Google Scholar 

  • Zhang Y, Buchholz F, Muyrers JP, Stewart AF (1998) A new logic for DNA engineering using recombination in Escherichia coli. Nat Genet 20:123–128

    Article  CAS  PubMed  Google Scholar 

  • Zhu B, Cai G, Hall EO, Freeman GJ (2007) In-fusion assembly: seamless engineering of multidomain fusion proteins, modular vectors, and mutations. Biotechniques 43:354–359

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by the National Natural Science Foundations of China (nos. 31100045 and 31270114), Program for Liaoning Excellent Talents in the University (no. LJQ2011067) and the Natural Science Foundation of Shandong Province (no. ZR2013BM001).

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Correspondence to Yingfeng An or Qingrui Zhang.

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Song Gao and Jiannan Zhang have contributed equally to this work.

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Gao, S., Zhang, J., Miao, T. et al. A Simple and Convenient Sticky/Blunt-End Ligation Method for Fusion Gene Construction. Biochem Genet 53, 42–48 (2015). https://doi.org/10.1007/s10528-015-9669-x

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  • DOI: https://doi.org/10.1007/s10528-015-9669-x

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