Study site
The study area was located in the Raton Basin in Costilla, Las Animas and Huerfano counties of south-central Colorado, and Colfax and Taos counties in northern New Mexico (Fig. 1). Land ownership was predominately private, which comprised ~89% of the area (Vitt 2007). Ranching, hunting, energy development, and residential home development were the predominant land use practices. The core of the study area (1,370 km2) encompassed historic bituminous coal mining during 1873–1995 and coal-bed methane gas development since 1982 (Hemborg 1998). As of 2009, the core gas field contained 2,421 well pads (1.77 well pads/km2) and 2,933 wells (2.14 wells/km2); some well pads had multiple wells on each site. Areas adjacent to, but outside, the core gas field are referred to herein as “outside the gas field.” On an annual basis, 45.8% (n = 65) of elk fitted with GPS collars used areas inside the gas field, 17.6% (n = 25) used areas outside the gas field, and 36.6% (n = 52) used both areas. Human modification of the landscape inside the core gas field included: well pads and associated structures, communities, residences, buildings, industries, ranching activities, roads, railroads, and pipelines. Human modification to the landscape outside the gas field included the aforementioned development except for well pads and associated structures. Therefore, elk inside the core gas field were exposed to human activities and infrastructure associated with natural gas development, whereas elk outside the core gas field were only exposed to human activity exclusive of natural gas development. Although roads were present in both areas, total road density was 2.2 times greater inside the core gas field (2.4 km/km2) compared to outside the gas field (1.1 km/km2). Average sizes (ha) of disturbances were 1.5 (±0.15 SE) for ranching, 3.2 (±0.73) for industrial development, 17.2 (±13.63) for community, 0.3 (±0.02) for residences, and 0.5 (±0.01) for well pads. The ratio of unmodified (km2) to modified areas (km2) inside the core gas field was 32:1, and outside the gas field it was 45:1. The population of elk on our study area received less hunting pressure than herds that occupied predominantly public land due to restricted hunter access. Potential predators of elk on the study area included black bears (Ursus americanus), mountain lions (Puma concolor), and coyotes (Canis latrans).
Topography ranges from rolling ridges and valleys to steep alpine slopes and cliffs (Vitt 2007) with elevations ranging from 1,800 to 4,300 m. Mean annual precipitation ranges from 15 cm at lower elevations to 51 cm at higher elevations (Vitt 2007). We obtained site-specific temperature data from 7 weather stations located across the study area at elevations ranging from 1,983 to 2,841 m. At the highest elevation weather station, minimum and maximum January and July temperatures were −26.3 and 12.4, and 3.2 and 26.4°C, respectively. At the lowest elevation weather station, minimum and maximum January and July temperatures were −25.2 and 20.9, and 7.1 and 33.8°C, respectively.
Capture and handling
We captured female elk using a helicopter and either a dart-gun or net-gun annually during February and March 2006–2009. Animals captured using the net-gun were manually restrained (i.e., not chemically immobilized) with hobbles and fitted with blindfolds to reduce stress. Darted elk were anesthesized using either carfentanil or a synthetic narcotic thiafentanil (A-3080). Sedated elk were also restrained with hobbles and fitted with blindfolds. Naltrexone was used as an antagonist to both carfentanil and thiafentanil. We estimated the ages of the elk using tooth erruption, replacement and wear techniques (Quimby and Gaab 1957). All elk were fitted with either a VHF (MOD-500 or MOD-501; Telonics, Mesa, AZ, USA) or GPS collar (TGW-3590; Telonics) and released at site of capture. We captured 184 individual elk over 4 years; 25, 32, 71 and 56 during 2006, 2007, 2008 and 2009, respectively. Eight elk were recaptured in 2007, 9 in 2008 and 5 in 2009. Ages of females at time of capture ranged from 1 to 12 years (\( \bar{x} = 5.6 \pm 0.2\,{\text{SE}};{\text{ median}} = 5 \)). Animal capture and handling protocols were approved by the Colorado Division of Wildlife (Permit nos. 06TR1083, 07TR1083, 08TR1083 and 09TR1083A001).
Data collection
Survival
We conducted aerial radio-tracking of both VHF and GPS collars every 2–4 weeks via fixed-wing aircraft to determine whether a mortality had occurred. Mortality sensors were programmed at the factory to be triggered after the collar was stationary for 8 h. When a mortality signal was detected, a ground crew located the carcass and attempted to determine the cause of death. For elk fitted with VHF collars, we used the midpoint between the last date known alive and the first date of detecting the mortality as the date of mortality for survival analyses. For elk fitted with GPS collars, we used GPS location estimates to pinpoint the date of mortality by examining date, time and distance between locations.
Landscape covariates
We modeled the proportion of security cover and human footprint (i.e., area of human activity) within areas used by elk to determine whether these factors influenced probability of survival during hunting season. We determined temporal changes in the human footprint and security cover from annual high-resolution aerial photography. The human footprint and security cover were year-specific, meaning that we updated current, on-the-ground human activities and available security cover as annual aerial photography became available, and attributed proportion of human footprint and cover known to be present at the time the area was used by the elk (see below). We delineated the following areal surface features: vegetation cover and human activities, which included natural gas well pads and ancillary facilities, residences, buildings, industries, and ranching activities. We also included linear features such as roads, railroads and pipelines into our human footprint layer. Because these linear features had an area associated with them, we measured the width (w) for a subsample of each feature. Areal and linear features were interpreted, digitized, and attributed based on annual aerial photography (2006–2009) and ground verification to confirm values of attributes. We used heads-up digitizing of all visible linear and areal surface features within our study area and performed all spatial analyses using ArcGIS® 9.3 software (ESRI, Redlands, CA, USA).
Roads were divided into 5 classes (1–5): paved roads such as interstates (1); paved state, county and farm roads (2); improved, but unpaved, access roads to well pads or residencies consisting of gravel or crushed stone (3); unimproved roads such as dirt (4); and unimproved transportation routes such as pipeline or power line rights-of-way (5). We randomly sampled 20 replicates of each road class (total samples = 100) and railroads (n = 20) to determine average width of disturbance associated with each. Pipelines were included as Class 5 roads because pipeline rights-of-way were unimproved and also used as transportation corridors. Buffers were equal to 1/2 (\( \bar{x}_{w} \)). We set our buffer distances by rounding to the nearest 0.1 m. Buffer distances were 5.2, 4.0, 2.6, 1.8, 1.7 and 2.1 m for Classes 1, 2, 3, 4, and 5, respectively. All disturbance features were merged into a single feature layer using the Union Overlay Method in ArcGIS® 9.3.
We developed a vegetation cover type map using high resolution (0.3 m) true-color and color-infrared (CIR) aerial photography and Feature Analyst® 4.2 (FA; Visual Learning Systems, Missoula, MT, USA) for ArcGIS® 9.3 (Visual Learning Systems 2008). We conducted a supervised classification using delineated polygons of known vegetation cover type for use with object-based feature extraction algorithms. The true-color and CIR bands were combined using FA, which resulted in 4 spectral bands (i.e., red, green, blue and near-infrared); the green spectral band was used to develop a texture band. Digital elevation models were used to develop an elevation band, which finally resulted in 6 bands (i.e., 4 spectral bands, 1 texture band and 1 elevation band). Last, we varied resolution/pixel classifier pattern and size combinations based on vegetation type. Prior to running classifiers, vegetation cover types that occurred over extensive areas (i.e., dense forest, open forest, oak-dominated shrubland, alpine and grassland) were resampled to 3-m resolution and vegetation cover types that were more restricted or linear (i.e., riparian) were resampled to 1.5-m resolution. We used the Manhattan classifier pattern and a width of 7 pixels to classify extensive vegetation types. The Bull’s Eye 2 classifier using 15 pixels was used to classify more restricted vegetation types. For these analyses, we reclassified the 6 vegetation classes into either cover or non-cover habitat; all vegetation classes except alpine and grassland habitats were classified as cover.
Data analysis
Annual and seasonal survival
We calculated Kaplan–Meier survival estimates (Kaplan and Meier 1958) modified for a staggered-entry design (Pollock et al. 1989) over 4 years to determine annual survival (year 1: 16 March 2006–28 February 2007; year 2: 1 March 2007–28 February 2008; year 3: 1 March 2008–28 February 2009; year 4: 1 March 2009–28 February 2010). We also were interested in calculating annual cause-specific mortality for the following sources: capture, harvest, natural or unknown and vehicle. We also calculated annual survival considering all sources of mortality except harvest (i.e., all harvest mortalities were censored). To determine cause-specific mortality we censored all sources except the cause of interest (Pollock et al. 1989). For example, when calculating non-harvest mortality, we censored all harvest mortalities, and to determine survival considering only harvest mortality, we censored all non-harvest mortalities. We analyzed all years separately because human activity and associated modification to the landscape increased with time (e.g., development of roads, gas wells and residential structures). Anthropogenic disturbance associated with infrastructure increased 10.6% from year 1 (3,893.9 ha) to year 2 (4,308.4 ha), 2.9% from year 2 to year 3 (4,432.9 ha), and remained virtually unchanged from year 3 to year 4.
We further characterized cause-specific mortality by season to document patterns in mortality relative to time of year. Results of seasonal survival summaries provided insights into periods within which most mortality occurred. Seasons were based on a combination of biological factors, environmental variables and hunting seasons and were defined as hunting, winter, and reproduction. Hunting seasons for female elk in Colorado began in late August [earliest = 25th (2007); latest = 30th (2008)] and ended 31 January. Thus, we defined the hunting season from 1 September to 31 January the following year. Winter was a period from February to April and the reproductive season of females was defined as May to August, which included parturition and lactation.
Conceptual framework
We examined the influence of extent of space use (ha) by elk and the proportion of the human footprint and security cover within these areas on cause-specific mortality and probability of survival during hunting season at a temporal scale of 1 week. Most mortality occurred during the hunting season (Table 1); therefore, areas used by elk and features within these areas may influence elk vulnerability to mortality. During the hunting season, we included all sources of mortality observed during the hunting season (i.e., harvest, unknown or natural) into our analyses except vehicle collisions due to limited sample size (n = 2). We chose a 1-week temporal window during the hunting season because most mortalities were due to harvest (Table 1), an event that likely reflected the choices made by both elk and hunters at the time of harvest or immediately preceding harvest. Energy companies previously agreed to limit activities during crepuscular hours (~0600–0900 and 1500–1800 hours) when hunters were present, at the request of landowners.
Table 1 Cause-specific mortalities (i.e., number) of female Rocky Mountain elk (Cervus elaphus) during hunting (September–January), winter (February–April) and reproduction (May–August) from March 2006 to March 2010 in the Raton Basin of south-central Colorado
To describe areas used by elk the week preceding the mortality event, we calculated a 100% minimum convex polygon (MCP) around all points during a 7-day period using Home Range Tools (HRT) for ArcGIS® (Rodgers et al. 2005). For comparison, we calculated extent of space use for elk that survived the hunting season, also during a 7-day period that was randomly selected. Throughout, extent of space use refers to the 100% MCP around all locations during a 7-day period. We randomly chose a 1-week period for each individual elk that survived during the hunting season to describe features of the landscape used by surviving elk. We used a random number generator, without replacement, to assign week to elk. During years when more elk were tracked than the number of weeks in the hunting season, we ran the random number generator the required number of times until all elk were assigned a week at random. This method reduced the number of elk assigned to the same week and allowed us to sample areas used by surviving elk over the entire hunting season. We used the MCP method for the 1-week interval because it would describe the entire area covered by the elk. Because of the short time interval, MCP would not be as affected by distributional shifts in areas of use by elk.
We classified the amount of human activity (i.e., human footprint) and cover (see “Landscape covariates” above) within each individual’s area (i.e., extent of space use) and report human footprint and cover as a proportion of the area associated with space use. For example, proportion of human footprint was 0.05, which was calculated by dividing the human footprint area (i.e., 25 ha) by total extent of space use (i.e., 500 ha). We also included age and year into models as explanatory variables.
We predicted elk would have reduced survival, or greater mortality: (1) when using less cover, greater human footprint, and larger spatial extents; (2) as age increased; and (3) as the study progressed due to increasing human activity through time. Specifically, (1) reduced cover would offer less protection from predators (i.e., natural or human) and human activities; (2) a larger human footprint may increase stress because of increased or more widespread human activity (Millspaugh et al. 2001), energy expenditure to avoid human activity (Parker et al. 1984), and vulnerability to direct human intrusion; (3) larger extents of space use would likely be an artifact of increased movement, which may result in increased energy expenditure or direct contact with mortality sources (e.g., vehicles, humans, predators); (4) increasing age may reduce survival due to senescence (Gaillard et al. 1998, 2000); and (5) increases in human activity through time, irrespective of the amount within home ranges, could decrease probability of survival.
Likelihood of cause-specific mortality
To assess how covariates influenced cause-specific mortality of female elk during the hunting season, with reference to elk that survived, we used multinomial logistic regression (MLR; PROC LOGISTIC), a framework similar to Bishop et al. (2005). Cause-specific mortality was placed into 2 groups: harvest and unknown or natural causes. We used MLR to examine how age, year, extent of space use, and proportion of cover and human footprint within areas used 1 week prior to the mortality event influenced likelihood of succumbing to mortality due to different causes. We used a generalized logit-link function (i.e., glogit) to model the nominal response variable with 3 levels (0, survived; 1, mortality due to harvest; 2, mortality due to unknown or natural causes). The group of elk that survived was used as the reference group.
Probability of survival
In addition to investigating factors affecting cause-specific mortality, we used generalized linear mixed models (GLMM; PROC GLIMMIX) to determine the influence of age, year, extent of space use, and proportion of human footprint and cover on the probability of survival during the hunting season relative to non-specific causes of mortality (i.e., all sources of mortality pooled). Fate was analyzed as a binary response variable (1, survived; 0, died); both harvest and unknown or natural mortalities were pooled for analysis. We included elk identification as a random effect to account for repeated entries of elk that survived multiple years. For our GLMM, we used a binary distribution and a logit-link function. All analyses were conducted using SAS® 9.2 (SAS Institute, Cary, NC, USA).