Skip to main content
Log in

DFT computational correlations on conformational barriers of Zn2+ and Ni2+ chiral meso-(α,β-unsaturated)- porphyrins

  • Original Paper
  • Published:
Journal of Molecular Modeling Aims and scope Submit manuscript

Abstract

Correlations between DFT and experimental measurements on Zn2+ and Ni2+ chiral meso-(α,β-unsaturated)- porphyrins were performed using Kohn-Sham methodology. The exchange-correlation Becke88–Perdew86 functional was used in conjunction with double-zeta Slater basis sets. An accurate description of the electronic processes depending on the metal ion (Zn, Ni) or ligand (perilaldehyde and myrtenal) was made, confirming experimental results in terms of structural and electronic modifications. Moreover, this theoretical study provides a stronger knowledge and interpretation of the dynamical conformational features of the free base, Zn and Ni structures. Fundamental links between the central metallic atom and distortions of the porphyrinic core and ligands were demonstrated, in agreement with experimental data. We observed that the core in ZnPeriP and ZnMyrtP species is almost flat, in comparison with the Ni porphyrinic core, which appeared much more distorted. The type of distortion differs between PeriP and MyrtP ligands, with a combined saddled-ruffled characteristic with the former and a pronounced ruffled twisting for the latter. Finally, conformational energy barriers were extracted by spinning one of the arms in steps of 20° in a 360° dihedral angle. The resulted conformational barriers for NiPeriP or NiMyrtP are lower in energy than for ZnPeriP or ZnMyrtP, in agreement with experimental data.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1a–d
Fig. 2a–d
Fig. 3a–d
Fig. 4a–d
Fig. 5
Fig. 6

Similar content being viewed by others

References

  1. Zhu H, Li Q (2016) Novel molecular non-volatile memory: application of redox-active molecules. Appl Sci 6:7

    Article  Google Scholar 

  2. Zhu H, Pookpanratana SJ, Bonevich JE, Natoli SN, Hacker CA, Ren T, Suehle JS, Richter CA, Li Q (2015) Redox-active molecular nanowire flash memory for high-endurance and high-density nonvolatile memory applications. ACS Appl Mater Interfaces 7(49):27306–27313

    Article  CAS  Google Scholar 

  3. Hatzell KB, Boota M, Kumbur EC, Gogotsi Y (2015) Flowable conducting particle networks in redox-active electrolytes for grid energy storage. J Electrochem Soc 162(5):A5007–A5012

    Article  CAS  Google Scholar 

  4. Woo LK, Goll JG (1989) Multielectron redox reactions between manganese porphyrins mediated by nitrogen atom transfer. J Am Chem Soc 111:3755–3757

    Article  CAS  Google Scholar 

  5. Lokesh KS, De Keersmaecker M, Adriaens A (2012) Self-assembled films of porphyrins with amine groups at different positions: influence of their orientation on the corrosion inhibition and the electrocatalytic activity. Molecules 17:7824–7842

    Article  CAS  Google Scholar 

  6. Amanpour J, Hu G, Alexy EJ, Mandal AK, Kang SH, Yuen JM, Diers JR, Lindsey SJ, Holten D, Bocian DF (2016) Tuning the electronic structure and properties of Perylene–porphyrin–Perylene panchromatic absorbers. J Phys Chem A 120:7434–7450

    Article  CAS  Google Scholar 

  7. Roth KM, Dontha N, Dabke RB, Gryko DT, Clausen C, Lindsey JS, Bocian DF, Kuhr WG (2000) Molecular approach toward information storage based on the redox properties of porphyrins in self-assembled monolayers. J Vac Sci Technol B 18:2359–2364

    Article  CAS  Google Scholar 

  8. Jiao J, Anariba F, Tiznado H, Schmidt I, Lindsey JS, Zaera F, Bocian DF (2006) Stepwise formation and characterization of covalently linked multiporphyrin-imide architectures on Si(100). J Am Chem Soc 128:6965–6974

    Article  CAS  Google Scholar 

  9. Tsekouras G, Minder N, Figgemeier E, Johansson O, Lomoth R (2008) A bistable electrochromic material based on a hysteretic molecular switch immobilised on nanoparticulate metal oxide. J Mater Chem 18:5824–5829

    Article  CAS  Google Scholar 

  10. Duan X, Huang Y, Lieber CM (2002) Nano Lett 2(5):487–490

    Article  CAS  Google Scholar 

  11. Simão C, Mas-Torrent M, Crivillers N, Lloveras V, Artés JM, Gorostiza P, Veciana J, Rovira C (2011) A robust molecular platform for non-volatile memory devices with optical and magnetic responses. Nat Chem 5:359–364

    Article  Google Scholar 

  12. Zhitenev NB, Sidorenko A, Tennant DM, Cirelli RA (2007) Chemical modification of the electronic conducting states in polymer nanodevices. Nat Nanotechnol 2:237–242

    Article  CAS  Google Scholar 

  13. Fateeva A, Pécaut J, Bayle P-A, Maldivi P, Dubois L (2009) Synthesis of chiral bridled porphyrins in their two enantiomeric forms. Eur J Org Chem 23:3845–3848

    Article  Google Scholar 

  14. Maheut G, Castaings A, Pécaut J, Daku LML, Pescitelli G, Di Bari L, Marchon J-C (2006) Chiroptical and computational studies of a bridled chiroporphyrin and of its nickel(II), copper(II), and zinc(II) complexes. J Am Chem Soc 128(19):6347–6356

    Article  CAS  Google Scholar 

  15. Duclairoir F, Dubois L, Calborean A, Fateeva A, Fleury B (2010) Bistable molecules development and Si surface grafting: two chemical tools used for the fabrication of hybrid molecule/Si CMOS component. Int J Nanotechnol 7:719–737

    Article  CAS  Google Scholar 

  16. Fateeva A, Calborean A, Pécaut J, Maldivi P, Marchon J-C, Dubois L (2008) Synthesis and conformational studies of chiral meso-(α, β-unsaturated)-porphyrins. Tetrahedron 64:10874–10881

    Article  CAS  Google Scholar 

  17. Pang T (2006) An introduction to computational physics, 2nd edn. Cambridge University Press, Cambridge

    Book  Google Scholar 

  18. Koch W, Holthausen MC (2001) A Chemist’s guide to density functional theory, 2nd edn. Wiley-VCH, Weinheim

    Book  Google Scholar 

  19. Buimaga-Iarinca L, Morari C (2014) Adsorption of small aromatic molecules on gold: a DFT localized basis set study including van der Waals effects. Theor Chem Accounts 133(7):1502

    Article  Google Scholar 

  20. Vangberg T, Ghosh A (1999) A first-principles quantum chemical analysis of the factors controlling ruffling deformations of porphyrins: insights from the molecular structures and potential energy surfaces of silicon, phosphorus, germanium, and arsenic porphyrins and of a peroxidase compound I model. J Am Chem Soc 121(51):12154–12160

    Article  CAS  Google Scholar 

  21. Scheidt RW, Kastner ME, Hatano K (1978) Stereochemistry of the toluene solvate of .alpha.,.beta.,.gamma.,.delta.-tetraphenylporphinatozinc(II). Inorg Chem 17:706–710

    Article  CAS  Google Scholar 

  22. Maclean AL, Foran GJ, Kennedy BJ, Turner P, Hambley TW (1996) Structural characterization of nickel(II) tetraphenylporphyrin. Aust J Chem 49(12):1273–1278

    Article  CAS  Google Scholar 

  23. Veyrat M, Maury O, Faverjon F, Over DE, Ramasseul R, Marchon JC, Turowska-Tyrk I, Scheidt WR (1994) Chiroporphyrins: an approach to asymmetric catalysts with stereocenters near the plane of the porphyrin ring. Angew Chem Int Ed Engl 33:220–223

    Article  Google Scholar 

Download references

Acknowledgment

Financial support from the National Authority for Scientific Research and Innovation (ANCSI), Core Programme, Project PN16-30 02 01 is gratefully acknowledged.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Adrian Calborean.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Calborean, A., Graur, F. & Bintintan, V. DFT computational correlations on conformational barriers of Zn2+ and Ni2+ chiral meso-(α,β-unsaturated)- porphyrins. J Mol Model 23, 181 (2017). https://doi.org/10.1007/s00894-017-3350-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00894-017-3350-8

Keywords

Navigation