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Complete genome sequence of a novel member of the genus Polerovirus from Cnidium officinale in South Korea

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Abstract

The complete genome sequence of a novel virus found infecting Cnidium officinale, which we have named "cnidium polerovirus 1" (CnPV1), is 6,090 nucleotides in length, similar to those of other poleroviruses. Seven open reading frames (ORF0–5 and ORF3a) were predicted in this genome. CnPV1 shares 32.4%–38.9% full-length nucleotide sequence identity with other known polerovirus genome sequences. The putative P0, P1-2, P3-5, P3, and P4 proteins share 11.3%–19.5%, 37.1%–49.8%, 26.7%–39.5%, 40.8%–49.7%, and 40.8%–49.7% amino acid sequence identity, respectively, with homologous inferred protein sequences from known poleroviruses. Phylogenetic analysis of P1-2 and P3 sequences places CnPV1 with other members of the genus Polerovirus, indicating that it should be classified in a new distinct species.

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The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.

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Acknowledgments

This work was supported by IPET (Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries); through Crop Viruses and Pests Response Industry Technology Development Program (321104-3), funded by the Ministry of Agriculture, Food and Rural Affairs (MAFRA), Republic of Korea. We thank Steven M. Thompson from Edanz (http://www.edanz.com/ac) for editing two drafts of this manuscript.

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Authors and Affiliations

  1. Department of new drug discovery and development, Chungnam National University, Daejeon, 34134, Republic of Korea

    Yang Chan Park & Kwang-Lae Hoe

  2. NEXBIO Co., Ltd., Daejeon, 34520, Republic of Korea

    Yang Chan Park, Kwang-Kyu Kim, Hyun Jeong Jun, Eun-Ha Kang & Su-Rim Lee

  3. Material & Component Convergence R&D Department, Korea Institute of Industrial Technology (KITECH), Ansan, 15588, Republic of Korea

    Jun Ki Ahn

  4. HK Genomics, Inc., Daejeon, Republic of Korea

    Han Kyu Seo

  5. School of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea

    Su-Heon Lee

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  1. Yang Chan Park
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  2. Kwang-Kyu Kim
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Correspondence to Su-Heon Lee or Kwang-Lae Hoe.

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Park, Y.C., Kim, KK., Jun, H.J. et al. Complete genome sequence of a novel member of the genus Polerovirus from Cnidium officinale in South Korea. Arch Virol 168, 104 (2023). https://doi.org/10.1007/s00705-023-05732-7

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  • DOI: https://doi.org/10.1007/s00705-023-05732-7

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