Skip to main content

Advertisement

SpringerLink
Log in

Complete genome sequence of Stellaria aquatica virus B, a novel polerovirus that infects Stellaria aquatica

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

The complete genome sequence of Stellaria aquatica virus B (StAVB), a new member of the genus Polerovirus that infects Stellaria aquatica, was determined using high-throughput RNA sequencing with confirmation by Sanger sequencing. The complete StAVB genome (GenBank accession no. OP389993) is 5,900 nucleotide (nt) long with seven open reading frames (ORF0–5 and ORF3a) that encode putative proteins (P0–P5 and P3a) in a similar configuration to that of other typical poleroviruses. Pairwise sequence comparisons with other poleroviruses showed 38–50% nt sequence identity in the complete genome and 13–24%, 36–45%, 7–68%, and 6–50% amino acid sequence identity in (aa), for the P0, P1–2, P3, and P4 protein, respectively. These data, together with the results of phylogenetic analysis, indicate that StAVB should be classified as a new member of the genus Polerovirus, family Solemoviridae.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

Data availability

The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.

References

  1. Sõmera M, Fargette D, Hébrard E et al (2021) ICTV virus taxonomy profile: solemoviridae 2021. J Gen Virol. https://doi.org/10.1099/jgv.0.001707

    Article  Google Scholar 

  2. Gray S, Gildow FE (2003) Luteovirus-aphid interactions. Annu Rev Phytopathol 41:539–566. https://doi.org/10.1146/annurev.phyto.41.012203.105815

    Article  CAS  Google Scholar 

  3. Gray’s new manual of botany (7th ed.—illustrated) A handbook of the flowering plants and ferns of the central and northeastern United States and adjacent Canada

  4. Oladeji OS, Oyebamiji AK (2020) Stellaria media (L.) Vill.—a plant with immense therapeutic potentials: phytochemistry and pharmacology. Heliyon 6:150. https://doi.org/10.1016/j.heliyon.2020.e04150

    Article  Google Scholar 

  5. Cho H-D, Kang W-S, Kim D-H et al (2019) Comparison of biological activity between Stellaria aquatica seed extracts. Korean J Food Preserv 26:228–237. https://doi.org/10.11002/kjfp.2019.26.2.228

    Article  Google Scholar 

  6. Sastry KS, Mandal B, Hammond J, et al (2019) Stellaria spp. (Stellaria aquatica, S. media) (Chickweed) BT—encyclopedia of plant viruses and viroids. In: Sastry KS, Mandal B, Hammond J, et al (eds) Springer India, New Delhi, pp 2501–2503

  7. Mertelik J, Mokra V, Gotzova B, Gabrielova S (2000) First Report of Impatiens necrotic spot virus in the Czech Republic. Plant Dis 84:1045. https://doi.org/10.1094/PDIS.2000.84.9.1045B

    Article  CAS  Google Scholar 

  8. Kil E-J, Byun H-S, Kim S et al (2015) Tomato yellow leaf curl virus Can Overwinter in Stellaria aquatica, a Winter-Hardy TYLCV-Reservoir Weed. Plant Dis 99:588–592. https://doi.org/10.1094/PDIS-04-14-0352-RE

    Article  Google Scholar 

  9. Gudeta WF, Igori D, Belete MT et al (2022) Complete genome sequence of pueraria virus A, a new member of the genus Caulimovirus. Arch Virol 167:1481–1485. https://doi.org/10.1007/s00705-022-05431-9

    Article  CAS  Google Scholar 

  10. Igori D, Kim SE, Kwon S, Moon JS (2022) Complete genome sequence of Plantago asiatica virus A, a novel putative member of the genus Polerovirus. Arch Virol 167:219–222. https://doi.org/10.1007/s00705-021-05265-x

    Article  CAS  Google Scholar 

  11. Lotos L, Efthimiou K, Maliogka VI, Katis NI (2014) Generic detection of poleroviruses using an RT-PCR assay targeting the RdRp coding sequence. J Virol Methods 198:1–11. Doi: https://doi.org/10.1016/j.jviromet.2013.12.007

  12. Smirnova E, Firth AE, Miller WA et al (2015) Discovery of a small non-AUG-initiated ORF in poleroviruses and luteoviruses that is required for long-distance movement. PLoS Pathog 11:e1004868. https://doi.org/10.1371/journal.ppat.1004868

    Article  CAS  Google Scholar 

  13. Zhang X-Y, Zhao T-Y, Li Y-Y et al (2018) The conserved Proline18 in the Polerovirus P3a is important for brassica yellows virus systemic infection. Front Microbiol 9:613. https://doi.org/10.3389/fmicb.2018.00613

    Article  Google Scholar 

  14. Gudeta WF, Belete MT, Igori D et al (2022) Complete genome sequence of cnidium closterovirus 1, a novel member of the genus Closterovirus infecting Cnidium officinale. Arch Virol. https://doi.org/10.1007/s00705-022-05448-0

    Article  Google Scholar 

  15. Moreno AB, López-Moya JJ (2020) When viruses play team sports: mixed infections in plants. Phytopathology 110:29–48. https://doi.org/10.1094/PHYTO-07-19-0250-FI

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This research was supported by the Korea Research Institute of Bioscience and Biotechnology (KRIBB) Research Initiative Program (KGS1002213). We thank Jeremy Allen, PhD, from Edanz (www.edanz.com/ac) for editing a draft of this manuscript.

Author information

Authors and Affiliations

  1. Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea

    Workitu Firomsa Gudeta, Ah-Young Shin, Se Eun Kim, Kwon Jeong-A, Kwon Seok-Yoon & Jae Sun Moon

  2. Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 34113, Republic of Korea

    Workitu Firomsa Gudeta, Kwon Jeong-A, Kwon Seok-Yoon & Jae Sun Moon

  3. Ethiopian Institute of Agricultural Research (EIAR), Holeta, Ethiopia

    Workitu Firomsa Gudeta

Authors
  1. Workitu Firomsa Gudeta
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Ah-Young Shin
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Se Eun Kim
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Kwon Jeong-A
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Kwon Seok-Yoon
    View author publications

    You can also search for this author in PubMed Google Scholar

  6. Jae Sun Moon
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Jae Sun Moon.

Ethics declarations

Conflict of interest

All authors declare no conflict of interest

Ethical approval

This article does not contain any studies with animals or human participants performed by any of the authors

Additional information

Handling Editor: Ralf Georg Dietzgen.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (DOCX 24 KB)

Supplementary file2 (DOCX 15 KB)

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Gudeta, W.F., Shin, AY., Kim, S.E. et al. Complete genome sequence of Stellaria aquatica virus B, a novel polerovirus that infects Stellaria aquatica. Arch Virol 168, 22 (2023). https://doi.org/10.1007/s00705-022-05687-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00705-022-05687-1

Search

Navigation