Abstract
A Victorivirus was detected in isolate F16176 of the fungus Fusarium asiaticum, the causal agent of Fusarium head blight in China. The full genome sequence of the virus was sequenced and characterized. The complete cDNA sequence is 5,281 nucleotides long with 64.2% G + C content and contains two open reading frames (ORFs) that overlap at the pentanucleotide UAAUG. The two ORFs are predicted to encode coat protein (CP) and RNA-dependent RNA polymerase (RdRp), which are conserved among the dsRNA mycoviruses of the genus Victorivirus. Pairwise comparisons and phylogenetic analysis of the deduced amino acid sequences of RdRp indicated that this dsRNA mycovirus is a new virus belonging to the species Rosellinia necatrix victorivirus 1 in the family Totiviridae. This study is the first to report a full-length genomic sequence of a putative member of the genus Victorivirus in F. asiaticum.
Similar content being viewed by others
References
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540–552
Chen X, He H, Yang X, Zeng H, Qiu D, Guo L (2016) The complete genome sequence of a novel Fusarium graminearum RNA virus in a new proposed family within the order Tymovirales. Arch Virol 161:2899–2903
Chiba S, Lin YH, Kondo H, Kanematsu S, Suzuki N (2013) A novel victorivirus from a phytopathogenic fungus, Rosellinia necatrix, is infectious as particles and targeted by RNA silencing. J Virol 87(12):6727–6738
Chu Y, Jeon J, Yea S, Kim Y, Yun S (2002) Double-stranded RNA mycovirus from Fusarium graminearum. Appl Environ Microbiol 68:2529–2534
Chu YM, Lim WS, Yea SJ, Cho JD, Lee YW, Kim KH (2004) Complexity of dsRNA mycovirus isolated from Fusarium graminearum. Virus Genes 28:135–143
Darissa O, Willingmann P, Schafer W, Adam G (2011) A novel double-stranded RNA mycovirus from Fusarium graminearum: nucleic acid sequence and genomic structure. Arch Virol 156:647–658
Dean R, Van Kan JA, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, Rudd JJ, Dickman M, Kahmann R, Ellis J, Foster GD (2012) The top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol 13:414–430
Dweba CC, Figlan S, Shimelis HA, Motaung TE, Sydenham S, Mwadzingeni L, Tsilo TJ (2017) Fusarium head blight of wheat: pathogenesis and control strategies. Crop Prot 91:114–122
Ghabrial SA, Nibert ML (2009) Victorivirus, a new genus of fungal viruses in the family Totiviridae. Arch Virol 154:373–379
Ghabrial SA, Castón JR, Jiang DH, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368
He H, Chen X, Li P, Qiu D, Guo L (2018) Complete genome sequence of a Fusarium graminearum double-stranded RNA virus in a newly proposed family, Alternaviridae. Genome Announc 6(8):e00064-18
Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511–518
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Mentjies P, Drummond A (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28(12):1647–1649
Komatsu K, Katayama Y, Omatsu T, Mizutani T, Fukuhara T, Kodama M, Arie T, Teraoka T, Moriyama H (2016) Genome sequence of a novel victorivirus identified in the phytopathogenic fungus Alternaria arborescens. Arch Virol 161(6):1701–1704
Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874
Lee K, Cho W, Yu J, Son M, Choi H (2014) A comparison of transcriptional patterns and mycological phenotypes following infection of Fusarium graminearum by four mycoviruses. PloS One 9:e100989
Li P, Zhang H, Chen X, Qiu D, Guo L (2015) Molecular characterization of a novel hypovirus from the plant pathogenic fungus Fusarium graminearum. Virology 481:151–160
Li P, Lin Y, Zhang H, Wang S, Qiu D, Guo L (2016) Molecular characterization of a novel mycovirus of the family Tymoviridae isolated from the plant pathogenic fungus Fusarium graminearum. Virology 489:86–94
Liu Y, Sun H, Li W, Xia Y, Deng Y, Zhang A, Chen H (2017) Fitness of three chemotypes of Fusarium graminearum species complex in major winter wheat-producing areas of China. Plos One 12(3):e0174040
Nicholson P, Simpson DR, Weston G, Rezanoor HN, Lees AK, Parry DW (1998) Detection and quantification of Fusarium culmorum and Fusarium graminearum in cereals using PCR assays. Physiol Mol Plant Pathol 53:17–37
Osaki H, Sasaki A, Nomiyama K, Tomioka K (2016) Multiple virus infection in a single strain of Fusarium poae shown by deep sequencing. Virus Genes 52(6):835–847
Potgieter AC, Page NA, Liebenberg J, Wright IM, Landt O, van Dijk AA (2009) Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes. J Gen Virol 90(6):1423–1432
Routhier E, Bruenn JA (1998) Functions of conserved motifs in the RNA-dependent RNA polymerase of a yeast double-stranded RNA virus. J Virol 72(5):4427–4429
Wang L, Wang S, Yang X, Zeng H, Qiu D, Guo L (2017) The complete genome sequence of a double-stranded RNA mycovirus from Fusarium graminearum strain HN1. Arch Virol 162(7):2119–2124
Wang L, He H, Wang S, Chen X, Qiu D, Kondo H, Guo L (2018) Evidence for a novel negative-stranded RNA mycovirus isolated from the plant pathogenic fungus Fusarium graminearum. Virology 518:232–240
Wang S, Kondo H, Liu L, Guo L, Qiu D (2013) A novel virus in the family Hypoviridae from the plant pathogenic fungus Fusarium graminearum. Virus Res 174(1–2):69–77
Wu B, Zhang X, Gong P, Li M, Ding H, Xin C, Zhao N, Li JH (2016) Eimeria tenella: a novel dsRNA virus in E. tenella and its complete genome sequence analysis. Virus Genes 52(2):1–9
Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68
Yu J, Kwon S, Lee K, Son M, Kim K (2009) Complete nucleotide sequence of double-stranded RNA viruses from Fusarium graminearum strain DK3. Arch Virol 154:1855–1858
Zhang T, Jiang Y, Huang J, Dong W (2013) Complete genome sequence of a putative novel victorivirus from Ustilaginoidea virens. Arch Virol 158(6):1403–1406
Acknowledgements
This work was supported by the National Key R&D Program of China (Grant Nos. 2016YFD0300700/2016YFD0300706) and Special Fund for China Agricultural Research System (CARS-3-1).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
Wei Li, Yunlei Xia, Haotian Zhang, Xing Zhang and Huaigu Chen declare that he has no conflict of interest.
Research involving human participants and/or animals
This article does not contain any studies with human participants or animals performed by any of the authors
Informed consent
Informed consent was obtained from all individual participants included in the study.
Additional information
Handling Editor: Massimo Turina.
Rights and permissions
About this article
Cite this article
Li, W., Xia, Y., Zhang, H. et al. A Victorivirus from Fusarium asiaticum, the pathogen of Fusarium head blight in China. Arch Virol 164, 313–316 (2019). https://doi.org/10.1007/s00705-018-4038-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00705-018-4038-9