Skip to main content
Log in

Theoretical studies of molecular conformation. Derivation of an additive procedure for the computation of intramolecular interaction energies. Comparison withab initio SCF computations

  • Published:
Theoretica chimica acta Aims and scope Submit manuscript

Abstract

An additive procedure (SIBFA) is developed for the rapid computation of conformational energy variations in very large molecules. The macromolecule is built out of constitutive molecular fragments and the intramolecular energy is computed as a sum of interaction energies between the fragments. The electrostatic and the polarization components are calculated using multicenter multipole expansions of theab initio SCF electron density of the fragments. The repulsion component is obtained as a sum of bond and lone pair interactions.

Tests of the procedure on a series of model compounds containing ether oxygens and pyridine-like nitrogens are reported and compared with the results of correspondingab initio SCF calculations. The resulting methodology is compatible with the simultaneous computation of intermolecular interactions.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Payne, P. W., Allen, L. C.: Applications of electronic structure theory, p. 29, SchaefferIII, H., Ed. New York: Plenum Press 1977

    Google Scholar 

  2. Intermolecular Interactions: From diatomics to biopolymers, Pullman, B., Ed. New York: Wiley, 1978

    Google Scholar 

  3. Gresh, N., Claverie, P., Pullman, A.: Int. J. Quantum Chem. Symp.13, 243 (1979)

    Google Scholar 

  4. Gresh, N., Pullman, B.: Theoret. Chim. Acta (Berl.)52, 67 (1979)

    Google Scholar 

  5. Gresh, N.: Biochim. Biophys. Acta597, 345 (1980)

    Google Scholar 

  6. Pullman, A., Zakrzewska, K., Perahia, D.: Int. J. Quantum Chem.16, 395 (1979)

    Google Scholar 

  7. Pullman, A., Pullman, B.: Quart. Rev. Biophys.14, 289 (1981)

    Google Scholar 

  8. Gresh, N., Etchebest, C., De La Luz Rojas, O., Pullman, A.: Int. J. Quantum Chem., Quantum Biol. Symp.8, 109 (1981)

    Google Scholar 

  9. Melius, C., Goddard IIIW.: Phys. Rev.A10, 1528 (1974)

    Google Scholar 

  10. Topiol, S., Moskowitz, J., Melius, C.: J. Chem. Phys.68, 2364 (1978)

    Google Scholar 

  11. Gresh, N., Pullman, A.: Theoret. Chim. Acta (Berl.)49, 283 (1978)

    Google Scholar 

  12. Vigné-Maeder, F., Claverie, P.: J. Chem. Phys., to be submitted

  13. Etchebest, C., Lavery, R., Pullman, A.: Theoret. Chim. Acta (Berl.)62, 17 (1982)

    Google Scholar 

  14. Hopfinger, A.: Conformational properties of macromolecules. New York: Wiley, 1973

    Google Scholar 

  15. Simon, Z.: Quantum biochemistry and specific interactions. Kent: Abacus Press, 1976

    Google Scholar 

  16. Hamilton, W.: J. Chem. Phys.26, 1016 (1956)

    Google Scholar 

  17. Clementi, E., Raimondi, D.: J. Chem. Phys.38, 2686 (1963)

    Google Scholar 

  18. Caillet, J., Claverie, P.: Acta Cryst. SectionA31, 448 (1975)

    Google Scholar 

  19. Genson, D., Christoffersen, R.: J. Am. Chem. Soc.95, 362 (1973)

    Google Scholar 

  20. Pullman, A., Port, G.: Theoret. Chim. Acta (Berl.)32, 77 (1973)

    Google Scholar 

  21. Kier, L.: Mol. Pharmacol.3, 487 (1967)

    Google Scholar 

  22. Beveridge, D., Radna, R.: J. Am. Chem. Soc.93, 3759 (1971)

    Google Scholar 

  23. Pullman, B., Courrière, P.: Mol. Pharmacol.8, 612 (1972)

    Google Scholar 

  24. Gorenstein, D., Kar, D.: J. Am. Chem. Soc.99, 672 (1977)

    Google Scholar 

  25. Bendl, J., Pretsch, E.: J. Comput. Chem.3, 580 (1982)

    Google Scholar 

  26. Jeffrey, G., Pople, J., Binkley, J., Vishveshwara, S.: J. Am. Chem. Soc.100, 371 (1977)

    Google Scholar 

  27. Govil, G.: Biopolymers15, 2303 (1976)

    Google Scholar 

  28. Lipari, G., Tosi, C.: Theoret. Chim. Acta (Berl.)50, 169 (1978)

    Google Scholar 

  29. Burkert, U.: J. Comput. Chem.1, 285 (1980)

    Google Scholar 

  30. Oyanagi, K., Kuchitsu, K.: Bull. Soc. Chem. Japan,51, 2237 (1978)

    Google Scholar 

  31. Suwalsky, M., Traub, W., Schmueli, D., Subirana, J.: J. Mol. Biol.42, 363 (1969)

    Google Scholar 

  32. Minyat, E., Ivanov, V., Kritzyn, A., Minchenkova, L., Schyolkina, A.: J. Mol. Biol.128, 397 (1978)

    Google Scholar 

  33. Pullman, B., Port, G.: Mol. Pharmacol.10, 360 (1974)

    Google Scholar 

  34. Kier, L.: J. Med. Chem.11, 441 (1968)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Gresh, N., Claverie, P. & Pullman, A. Theoretical studies of molecular conformation. Derivation of an additive procedure for the computation of intramolecular interaction energies. Comparison withab initio SCF computations. Theoret. Chim. Acta 66, 1–20 (1984). https://doi.org/10.1007/BF00577135

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00577135

Key words

Navigation