Abstract
The nucleotide sequence and the 5′ flanking region of the rbcL gene coding for the large subunit of ribulose bisphosphate-1,5-carboxylase/oxygenase of Pylaiella littoralis, a brown alga, has been determined and the deduced amino-acid sequence has been compared to those of various photosynthetic and chemoautotrophic Eubacteria, of a red alga and of green plastids (Euglena gracilis, green algae and higher plants). Unlike the rbcL genes of green plastids which are more closely related to those of cyanobacteria the P. littoralis rbcL gene is more closely related to that of a β-purple bacterium, as was found for the rbcS gene of another chromophytic alga [Boczar et al., Proc Natl Acad Sci USA 86: 4996–4999, 1989]. Matrix data of homology between the rbcL gene of P. littoralis and the same gene of other organisms are presented. Based on our previous report, the gene coding for the 16S rRNA from P. littoralis is closely related to that of E. gracilis (Markowicz et al., Curr Genet 14: 599–608, 1988). We suggest that the large plastid DNA molecule of P. littoralis is a phylogenetically composite genome which probably resulted from mixed endosymbiosis events, or from a horizontal transfer of DNA.
Similar content being viewed by others
References
Andersen K, Caton J: Sequence analysis of the Alcaligenes eutrophus chromosomally encoded ribulose bisphosphate carboxylase large and small subunit genes and their gene product. J Bact 169: 4547–4558 (1987).
Boczar BA, Delaney TP, Cattolico RA: Gene for the ribulose-1,5-bisphosphate carboxylase small subunit protein of the marine alga Olisthodiscus luteus is similar to that of a chemoautotrophic bacterium. Proc Natl Acad Sci USA 86: 4996–4999 (1989).
Bohnert HJ, Michalowski C, Bevacqua S, Mulcke H, Löffelhardt W: Cyanelle DNA from Cyanophora paradoxa. Mol Gen Genet 201: 565–574 (1985).
Curtis SE, Haselkorn R: Isolation and sequence of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase from the cyanobacterium Anabaena 7120. Proc Natl Acad Sci USA 80: 1835–1839 (1983).
Douglas SE, Dunford DG: The small subunit of ribulose-1,5-bisphosphate carboxylase is plastid-encoded in the chlorophyll c-containing alga Cryptomonas F. Plant Mol Biol 13: 13–20 (1989).
Dron M, Rahire M, Rochaix JD: Sequence of the chloroplast DNA region of Chlamydomonas reinhardtii containing the gene of the large subunit of ribulose bisphosphate carboxylase and parts of its flanking genes. J Mol Biol 162: 775–793 (1982).
Gibbs SP: The chloroplasts of some algal groups may have evolved from endosymbiotic eukaryotic algae. Ann NY Acad Sci 361: 193–207 (1981).
Gingrich JC, Hallick RB: The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. J Biol Chem 260: 16162–16168 (1985).
Hwang SH, Tabita FR: Cloning and expression of the chloroplast-encoded rbcL and rbcS genes from the marine diatom Cylindrotheca sp. strain N1. Plant Mol Biol 13: 69–79 (1989).
Kerby NW, Evans LV: Pyrenoid protein from the brown alga Pylaiella littoralis. Planta 151: 469–475 (1981).
Loiseaux-de Goër S, Markowicz Y, Dalmon J, Audren H: Physical maps of the two circular plastid DNA molecules of the brown alga Pylaiella littoralis (L.) Kjellm. Curr Genet 14: 155–162 (1988).
Markowicz Y, Loiseaux-de Goër S, Mache R: Presence of a 16S rRNA pseudogene in the bimolecular plastid genome of the primitive brown alga Pylaiella littoralis. Evolutionary implications. Curr Genet 14: 599–608 (1988).
McIntosh L, Poulsen C, Bogorad L: Chloroplast gene sequence for the large subunit of ribulose bisphosphate carboxylase of maize. Nature 288: 556–560 (1980).
Miziorko HM, Lorimer GH: Ribulose-1,5-bisphosphate carboxylase/oxygenase. Ann Rev Biochem 52: 507–535 (1983).
Nargang F, McIntosh L, Somerville C: Nucleotide sequence of the ribulose bisphosphate carboxylase gene from Rhodospirillum rubrum. Mol Gen Genet 193: 220–224 (1984).
Newman SM, Derocher J, Cattolico R: Analysis of chromophytic and rhodophytic ribulose-1,5-bisphosphate carboxylase indicates extensive structural and functional similarities among evolutionarily diverse algae. Plant Physiol 91: 939–946 (1989).
Niyogi SK, Foote RS, Mural RJ, Larimer FW, Mitra S, Soper TS, Machanoff R, Hartman F: Non essentiality of histidine 291 in Rhodospirillum rubrum ribulose-1,5-bisphosphate carboxylase/oxygenase as determined by site directed mutagenesis. J Biol Chem 261: 10087–10092 (1986).
Palmer JD, Jansen RK, Michaels HJ, Chase MW, Manhart JR: Chloroplast DNA variation and plant phylogeny. Ann Missouri Bot Gard 75: 1180–1206 (1988).
Plumley FG, Kirchman DL, Hodson RE, Schmidt GW: Ribulose bisphosphate carboxylase from three chlorophyll c-containing algae. Plant Physiol 80: 685–691 (1986).
Reith M, Cattolico RA: Inverted repeat of Olisthodiscus luteus chloroplast DNA contains genes for both subunits of ribulose-1–5-bisphosphate carboxylase and the 32000 dalton QB protein: phylogenetic implications. Proc Natl Acad Sci USA 83: 8599–8603 (1986).
Schneider G, Lindqvist Y, Branden C-I, Lorimer G: Three-dimensional structure of ribulose-1,5-bisphosphate carboxylase oxygenase from Rhodospirillum rubrum at 2.9 A resolution. EMBO J 5: 3409–3415 (1986).
Shinozaki K, Sugiura M: The nucleotide sequence of the tobacco chloroplast for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase. Gene 20: 91–102 (1982).
Shinozaki K, Yamada C, Takahata N, Sugiura M: Molecular cloning and sequence analysis of the cyanobacterial gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase. Proc Natl Acad Sci USA 80: 4050–4054 (1983).
Valentin K, Zetshe K: The genes of both subunits of ribulose-1,5-bisphosphate carboxylase constitute an operon on the plastome of a red alga. Curr Genet 16: 203–209 (1989).
Viale AM, Kobayashi H, Akazawa T: Expressed genes for plant-type ribulose-1,5-bisphosphate carboxylase/oxygenase in the photosynthetic bacterium Chromatium vinosum, which possesses two complete sets of the genes. J Bact 117: 2391–2400 (1989).
Wagner SJ, Stevens SEJr, Nixon BT, Lambert DH, Quivey RG, Tabita FR: Nucleotide and deduced amino acid sequence of the Rhodobacter sphaeroides gene encoding form II ribulose-1,5-bisphosphate carboxylase/oxygenase and comparison with other deduced form I and II sequences. FEMS Lett 55: 217–222 (1988).
Woese CR: Bacterial evolution. Microbiol Rev 51: 221–271 (1987).
Yang RCA, Dove M, Seligy VL, Lemieux C, Turmel M, Narang SA: Complete nucleotide sequence and mRNA mapping of the large subunit gene of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Chlamydomonas moewusii. Gene 50: 259–270 (1986).
Yoshinaga K, Ohta T, Suzuki Y, Sugiura M: Chlorella chloroplast DNA sequence containing a gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase and a part of a possible gene for the β′ subunit of RNA polymerase. Plant Mol Biol 10: 245–250 (1988).
Zurawski G, Perrot B, Bottomley W, Whitfeld PR: The structure of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase from spinach chloroplast DNA. Nucl Acids Res 9: 3251–3270 (1981).
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Assali, NE., Mache, R. & Goër, S.Ld. Evidence for a composite phylogenetic origin of the plastid genome of the brown alga Pylaiella littoralis (L.) Kjellm. Plant Mol Biol 15, 307–315 (1990). https://doi.org/10.1007/BF00036916
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00036916