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Oncogene arrangement in a shooty strain of Agrobacterium tumefaciens

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Abstract

The Agrobacterium tumefaciens nopaline strain 82.139 induces non-teratogenic shooty tumours on several plant species. We have determined the position of the T-region oncogenes in a 11.4 kb Xba I fragment which shows a general organization similar to its pTiC58 counterpart. Sequence analysis of the 4.7 kb right part of this fragment allowed us to identify the pTi82.139 ipt, 6b and nos coding sequences. pTi82.139 lacks the 6a gene, which lies between the ipt and 6b genes in pTiC58. The intervening region between the 6b and the nos genes contains an additional ORF with homology to ORF 21 (transcript 3′) from the TR-DNA of octopine strain pTi15955.

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References

  1. Amasino RM, Miller CO: Hormonal control of tobacco crown gall tumor morphology. Plant Physiol 69: 389–392 (1982).

    Google Scholar 

  2. Barker RF, Idler KB, Thompson DV, Kemp JD: Nucleotide sequence of the T-DNA region from Agrobacterium tumefaciens octopine Ti plasmid pTi15955. Plant Mol Biol 2: 335–350 (1983).

    Google Scholar 

  3. Béclin C, Charlot F, Jouanin L, Doré C: Potential use of aux 2 gene from Agrobacterium rhizogenes as a conditional negative marker in transgenic cabbage. Transgenic Res 2: 48–55 (1993).

    Google Scholar 

  4. Berthomieu P, Béclin C, Charlot F, Dore C, Jouanin L: Routine transformation of rapid cycling cabbage (Brassica oleracea): molecular evidence for regeneration of chimeras. Plant Sci, in press.

  5. Bevan M, Barnes WM, Chilton MD: Structure and transcription of the nopaline synthase gene region T-DNA. Nucl Acids Res 11: 369–385 (1983).

    PubMed  Google Scholar 

  6. Bonnard G, Tinland B, Paulus F, Szegedi E, Otten L: Nucleotide sequence, evolutionary origin and biological role of a rearranged cytokinin gene isolated from a wide host range biotype III Agrobacterium strain. Mol Gen Genet 216: 428–438 (1989).

    Article  PubMed  Google Scholar 

  7. Bouchez D, Tokuhisha JG, Llewellyn DJ, Dennis ES, Ellis J: The ocs-element is a component of the promoters of several T-DNA and plant viral genes. EMBO J 8: 4197–4204 (1989).

    PubMed  Google Scholar 

  8. Brasileiro ACM, Leplé JC, Muzzin J, Ounnoughi D, Michel MF, Jouanin L: An alternative approach for gene transfer in trees using wild-type Agrobacterium strains. Plant Mol Biol 17: 441–452 (1991).

    PubMed  Google Scholar 

  9. Brasileiro ACM, Tourneur C, Leplé JC, Combes V, Jouanin L: Expression of the mutant Arabidopsis thaliana acetolactate synthase gene confers chlorsulfuron resistance to poplar. Transgenic Res 1: 133–141 (1992).

    Google Scholar 

  10. Buchholz W, Thomashow MF: Host range encoded by the Agrobacterium tumefaciens tumor-inducing plasmid pTiAg63 can be expanded by its T-DNA oncogene complement. J Bact 160: 327–332 (1984).

    PubMed  Google Scholar 

  11. Canaday J, Gerard J-C, Grouzet P, Otten L: Organization and functional analysis of three T-DNAs from the vitopine Ti plasmid pTiS4. Mol Gen Genet 235: 292–303 (1992).

    Article  PubMed  Google Scholar 

  12. Clarence I, Kado Ph D: Molecular mechanisms of crown gall tumorigenesis. Crit Rev Plant Sci 10: 1–32 (1991).

    Google Scholar 

  13. Depicker A, DeWilde M, DeVos G, DeVos R, VanMontagu M, Schell J: Molecular cloning of overlapping segments of the nopaline Ti-plasmid pTiC58 as a means to restriction endonuclease mapping. Plasmid 3: 193–211 (1980).

    PubMed  Google Scholar 

  14. Depicker A, Stachel S, Dhaese P, Zambryski P, Goodman HM: Nopaline synthase: transcript mapping and DNA sequence. J Mol Appl Genet 1: 561–573 (1982).

    PubMed  Google Scholar 

  15. Devereux J: The GCG sequence analysis package, version 7 Genetics computer Group, University Research Park, WI (1984).

    Google Scholar 

  16. Ellis JG, Llewellyn DJ, Walker DJ, Dennis ES, Peacock WJ: The ocs-element: a 16-base pair palindrome essential for activity of the octopine synthase enhancer. EMBO J 6: 3203–3208 (1987).

    Google Scholar 

  17. Gielen J, DeBeuckeleer M, Seurinck J, Deboeck F, DeGreve H, Lemmers M, VanMontagu M, Schell J: The complete nucleotide sequence of the TL-DNA of the Agrobacterium tumefaciens plasmid pTiAch5. EMBO J 3: 835–846 (1984).

    PubMed  Google Scholar 

  18. Goldberg SB: Nucleotide sequence of the tmr locus of Agrobacterium tumefaciens pTiT37 T-DNA. Nucl Acids Res 12: 4665–4677 (1984).

    PubMed  Google Scholar 

  19. Hoekema A, DePater BS, Fellinger AJ, Hooykaas PJJ, Schilperoort RA: The limited host range of an Agrobacterium tumefaciens strain extended by a cytokinin gene from a wide host range T-region. EMBO J 3: 3043–3047 (1984).

    Google Scholar 

  20. Hooykaas PJJ, Schilperoort RA: Agrobacterium and plant genetic engineering. Plant Mol Biol 19: 15–38 (1992).

    Article  PubMed  Google Scholar 

  21. Joshi CP: An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucl Acids Res 15: 6643–6653 (1987).

    PubMed  Google Scholar 

  22. Jouanin L, Bouchez D, Drong RF, Tepfer D, Slightom JL: Analysis of TR-DNA/plant jonctions in the genome of a Convolvulus arvensis clone transformed by Agrobacterium rhizogenes strain A4. Plant Mol Biol 12: 75–85 (1989).

    Article  Google Scholar 

  23. Koncz C, Schell J: The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector. Mol Gen Genet 204: 383–396 (1986).

    Article  Google Scholar 

  24. Körber H, Strizhov N, Staiger D, Feldwisch J, Olsson O, Sandberg G, Palme K, Schell J: T-DNA gene 5 of Agrobacterium modulates auxin response by autoregulated synthesis of a growth hormone antagonist in plants. EMBO J 10: 3983–3991 (1991).

    PubMed  Google Scholar 

  25. Levesque H, Delepelaire P, Rouzé P, Slightom J, Tepfer D: Common evolutionary origin of the central portions of the Ri TL-DNA of Agrobacterium rhizogenes and Ti T-DNAs of Agrobacterium tumefaciens. Plant Mol Biol 11: 731–744 (1988).

    Google Scholar 

  26. Messens E, Lenaerts A, VanMontagu M, Hedges RW: Genetic basis for opine secretion from crown gall tumour cells. Mol Gen Genet 199: 344–348 (1985).

    Article  Google Scholar 

  27. Michel MF, Brasileiro ACM, Depierreux C, Otten L, Delmotte F, Jouanin L: Identification of different Agrobacterium strains isolated from the same forest nursery. Appl Envir Microbiol 56: 3537–3545 (1990).

    Google Scholar 

  28. Mitra A, An G: Three distinct regulatory element comprise the upstream promoter region of the nopaline synthase gene. Mol Gen Genet 215: 294–299 (1989).

    PubMed  Google Scholar 

  29. Pellegrineschi A, Tepfer D: Micropropagation and plant regeneration in Sesbania rostrata. Plant Sci 88: 113–119 (1993).

    Article  Google Scholar 

  30. Peralta EG, Hellmiss R, Ream W: Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumorinducing plasmid. EMBO J 5: 1137–1142 (1986).

    Google Scholar 

  31. Salomon F, Deblaere R, Leemans J, Hernalsteens JP, VanMontagu M, Schell J: Genetic identification of functions of TR-DNA transcripts in octopine crown-galls. EMBO J 3: 141–146 (1983).

    Google Scholar 

  32. Sciaky D, Montoya AL, Chilton MD: Fingerprints of Agrobacterium Ti plasmids. Plasmid 1: 238–253 (1978).

    PubMed  Google Scholar 

  33. Spanier K, Schell J, Schreier PH: A functional analysis of T-DNA gene 6b: the fine tuning of cytokinin effects on shoot development. Mol Gen Genet 219: 209–216 (1989).

    Article  PubMed  Google Scholar 

  34. Swofford DL: PAUP: Phylogenetic analysis using parsimony, version 3.1. Center for Biodiversity, Illinois Natural History Survey, Champaign IL (1993).

    Google Scholar 

  35. Tinland B, Huss B, Paulus F, Bonnard G, Otten L: Agrobacterium tumefaciens genes 6b are strain-specific and affect the activity of auxin as well as cytokinin genes. Mol Gen Genet 219: 217–224 (1989).

    Article  Google Scholar 

  36. Tinland B, Rohfritsch O, Michler P, Otten L: Agrobacterium tumefaciens T-DNA gene 6b stimulates rol-induced root formation, permits growth at high auxin concentrations and increases root size. Mol Gen Genet 223: 1–10 (1990).

    PubMed  Google Scholar 

  37. Tokuhisa J, Singh K, Dennis ES, Peacock JW: A DNA-binding protein factor recognizes two binding domains within the octopine synthase enhancer element. Plant Cell 2: 215–224 (1990).

    Article  PubMed  Google Scholar 

  38. Turgeon R: Teratomas and secondary tumors. In: Kahl G, Schell JS (ed) Molecular Biology of Plant tumors, pp. 391–414. Academic Press, New York (1982).

    Google Scholar 

  39. Vanderleyden J, Desair J, DeMeirsman C, Michiels K, VanGool A, Jen G, Chilton MD: Nucleotide sequence of the T-DNA region encoding transcripts 6a and 6b of the pTiT37 Ti plasmid. Plant Mol Biol 7: 33–41 (1986).

    Google Scholar 

  40. Velten J, Willmitzer L, Leemans J, Ellis J, Deblaere R, VanMontagu M, Schell J: TR genes involved in agropine production. In: Pühler A (ed) Molecular Genetics of the Becteria-Plant Interaction, pp. 303–312. Springer-Verlag, Berlin/Heidelberg (1983).

    Google Scholar 

  41. Weiler EW, Schröder J: Hormone genes and crown gall disease. Trends Biochem Sci 12: 271–275 (1987).

    Article  Google Scholar 

  42. Willmitzer L, Dhaese P, Schreier PH, Schmalenbach W, VanMontagu M, Schell J: Size, location and polarity of T-DNA-encoded transcripts in nopaline crown gall tumors; common transcripts in octopine and nopaline tumors. Cell 32: 1045–1056 (1983).

    Article  PubMed  Google Scholar 

  43. Yanofsky M, Lowe B, Montoya A, Rubin R, Krul W, Gordon M, Nester E: Molecular and genetic analysis of actors controlling host range in Agrobacterium tumefaciens. Mol Gen Genet 201: 237–246 (1985).

    Google Scholar 

  44. Zambryski PC: Chronicles from the Agrobacterium-plant cell DNA transfer story. Annu Rev Plant Physiol Plant Mol Biol 43: 465–490 (1992).

    Article  Google Scholar 

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Drevet, C., Brasileiro, A.C.M. & Jouanin, L. Oncogene arrangement in a shooty strain of Agrobacterium tumefaciens . Plant Mol Biol 25, 83–90 (1994). https://doi.org/10.1007/BF00024200

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