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Nucleotide variation in the mitochondrial DNA cytochrome oxidase 1 gene in the Siberian sucker (Catostomus catostomus rostratus) from Kolyma River

  • Animal Genetics
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Abstract

This study presents the data of the first molecular genetic analysis of the Siberian sucker from Kolyma River. Polymorphism of the mtDNA cytochrome oxidase 1 gene was established. Comparative sequence analysis of the gene examined and the GenBank variants characterizing suckers from the rivers of Canada enabled the suggestion that the sucker penetrated to Asia from North America approximately at the end of Early and the beginning of the Middle Pleistocene. It was demonstrated that intrapopulation genetic variation in the Siberian sucker accounted for 11.63% of total variation, while the proportion of the inter-group component (F st) constituted 88.37%. It seems likely that a considerable proportion of intergroup variation was caused by the long period of isolation of the Siberian sucker in Kolyma River. The prevalence of one common haplotype, CH-COI 1, in the sample examined indicates that the founder effect played an important role in the history of the formation of the Kolyma population.

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References

  1. Scott, W.B. and Crossman, E.J., Freshwater Fishes of Canada, Bull. 184 of Fisheries Research Board of Canada, 1973.

    Google Scholar 

  2. Berg, L.S., Ryby presnykh vod SSSR i sopredel’nykh stran (Freshwater Fishes of the Soviet Union and Adjacent Countries), Moscow: Akad. Nauk SSSR, 1949, part 2, 4th ed.

    Google Scholar 

  3. Lindberg, G.U., Krupnye kolebaniya urovnya okeana v chetvertichnyi period (Large-Scaled Fluctuation of Sea Level in the Quaternary Period), Leningrad: Nauka, 1972.

    Google Scholar 

  4. Novikov, A.S., Prostantinov, V.S., and Shtundyuk, Yu.V., Distribution of Siberian sucker, in Gidrobiologicheskie issledovaniya vnutrennikh vodoemov Severo-Vostoka SSSR (Hydrobiological Studies of Inland Waters of the North-East of the Soviet Union), Vladivostok: Dal’nevost. Nauchn. Tsentr Akad. Nauk SSSR, 1975, pp. 303–308.

    Google Scholar 

  5. Kirillov, F.Ya., Ryby Yakutii (Fishes of Yakutia), Moscow: Nauka, 1972.

    Google Scholar 

  6. Novikov, A.S., Ryby reki Kolymy (Fishes of the Kolyma River), Moscow: Nauka, 1966.

    Google Scholar 

  7. Chereshnev, I.A., Biogeografiya presnovodnykh ryb Dal’nego Vostoka Rossii (Biogeography of Freshwater Fishes of the Far East), Vladivostok: Dal’nauka, 1998.

    Google Scholar 

  8. Chereshnev, I.A., Presnovodnye ryby Chukotki (Freshwater Fishes of Chkotka), Magadan: Severo-Vost. Nauchn. Tsentr Dal’nevost. Otd. Ross. Akad. Nauk, 2008.

    Google Scholar 

  9. Reshetnikov, Yu.S., Popova, O.A., Sokolov, L.I., et al., Atlas presnovodnykh ryb Rossii (Atlas of Russian Freshwater Fishes), Moscow: Nauka, 2002, vol. 1.

  10. Puminov, A.P., About buried river valleys of eastern North coast of the Arctic, in Geologiya i minerageniya arkticheskikh oblastei SSSR (Geology and Minerageny of the USSR Arctic Regions), Leningrad: Nauchno-Issled. Inst. Geol. Arct., 1981, pp. 77–88.

    Google Scholar 

  11. Biryukov, V.A., Dunaev, N.N., and Myslivets, V.I., Ancient river network on the shelf of the Chukchi Sea, in XI kongress INKVA: Tezisy dokladov (9th Congress of International Union for Quaternary Research: Report Abstracts), Moscow, 1982, vol. 3, pp. 49–50.

    Google Scholar 

  12. Preisnitz, K., Fußflächen und Täler in der Arktis NW-Kanadas und Alaskas, Verh. Dtsch. Geographentag, 1983, vol. 43, pp. 89–91.

    Google Scholar 

  13. Chereshnev, I.A, Origin of the freshwater ichthyofauna in Beringia vicinity, in Biogeografiya Beringiiskogo sektora Subarktiki (Biogeography of the Beringian Sector of the Subarctic), Vladivostok, 1986, pp. 122–145.

    Google Scholar 

  14. Harris, P.M. and Mayden, R.L., Phylogenetic relationships of major clades of Catostomidae as inferred from mitochondrial SSU and LSU rDNA sequences, Mol. Phylogen. Evol., 2001, vol. 20, pp. 225–237.

    Article  CAS  Google Scholar 

  15. Cunha, C., Mesquita, N., Dowling, T.E., et al., Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences, J. Fish. Biol., 2002, vol. 61, pp. 929–944.

    Article  CAS  Google Scholar 

  16. Bachevskaya, L.T., Pereverzeva, V.V., Ivanova, G.D., and Agapova, G.A., Phylogenetic relationships of the North American C. catostomus and Siberian C. catostomus rostratus suckers living at a considerable distance from each other, in Problemy izucheniya i okhrany zhivotnogo mira na Severe (The Study and Conservation of Wildlife in the North), (Proc. 2nd All-Russ. Conf. Int. Participation), Syktyvkar, 2013, pp. 12–14.

    Google Scholar 

  17. Fleming, M.A. and Cook, J.A., Phylogeography of endemic ermine (Mustela erminea) in southeast Alaska, Mol. Ecol., 2002, vol. 11, pp. 795–807.

    Article  PubMed  CAS  Google Scholar 

  18. Tamura, K., Stecher, G., Peterson, D., et al., MEGA6: molecular evolutionary genetics analysis version 6.0, Mol. Biol. Evol., 2013, vol. 30, pp. 2725–2729.

    Article  PubMed  CAS  Google Scholar 

  19. Excoffier, L., Laval, G., and Schneider, S., Arlequin ver. 3.0: an integrated software package for population genetics data analysis, Evol. Bioinform. Online, 2005, vol. 1, pp. 47–50.

    CAS  PubMed Central  Google Scholar 

  20. Nei, M., Molecular Evolutionary Genetics, New York: Columbia Univ. Press, 1987.

    Google Scholar 

  21. Hedrick, P.W., Genetics of Populations, Boston: Jones and Bartlett, 2003.

    Google Scholar 

  22. Bandelt, H.-J., Forster, P., and Röhl, A., Median-joining networks for inferring intraspecific phylogenies, Mol. Biol. Evol., 1999, vol. 16, pp. 37–48.

    Article  PubMed  CAS  Google Scholar 

  23. Xiao, W., Zhang, Y., and Liu, H., Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): taxonomy, biogeography, and coevolution of a special group restricted in East Asia, Mol. Phylogenet. Evol., 2001, vol. 18, no. 6, pp. 163–173.

    Article  PubMed  CAS  Google Scholar 

  24. Tajima, F., Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Gen. Soc. Am., 1989, vol. 123, pp. 585–595.

    CAS  Google Scholar 

  25. Saitoh, K., Sado, T., Mayden, R.L., et al., Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world’s largest freshwater fish clade based on 59 whole itogenome sequences, J. Mol. Evol., 2006, vol. 63, no. 6, pp. 826–841.

    Article  PubMed  CAS  Google Scholar 

  26. Hubert, N., Hanner, R., Holm, E., et al., Identifying Canadian freshwater fishes through DNA barcodes, PLoS One, 2008, vol. 3, no. 6. e2490.

    Article  PubMed  PubMed Central  Google Scholar 

  27. Voronova, N.V., Buga, S.V., and Kurchenko, V.P., The gene sequence of cytochrome c oxidase subunit I in molecular taxonomy of animals: approaches, outcomes and constraints, Tr. Belarus. Gos. Univ., Ser. Fiziol. Biochim. Mol. Osn. Funkts. Biosis., 2012, vol. 7,part 1, pp. 22–42.

    Google Scholar 

  28. Avise, J.C., Molecular Markers, Natural History and Evolution, New York: Chapman and Hall, 1994.

    Book  Google Scholar 

  29. Brown, W.M., George, M., and Wilson, A.C., Rapid evolution of animal mitochondrial DNA, Proc. Natl. Acad. Sci. U.S.A., 1979, vol. 76, pp. 1967–1971.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  30. Lebedev, V.D., Perch Perca fluviatilis L. remains in the Quaternary deposits of the North-East Siberia, Vopr. Ikhtiol., 1960, no. 14, pp. 63–65.

    Google Scholar 

  31. Vas’kovskii, L.P., Stratigraphy of Anthropogenic (Quaternary) deposits in the far north-east Asia, in Materialy po geologii i poleznym iskopaemym Severo-Vostka SSSR (Materials on Geology and Mineral Resources of the Northeast Soviet Union), Magadan: Knizhnoe Izd., 1963, issue 16, pp. 24–53.

    Google Scholar 

  32. Nazarkin, M.V., Freshwater fish from Late Quaternary sediments of the East Siberian Sea coast, Vopr. Ikhtiol., 1992, vol. 32, no. 5, pp. 48–56.

    Google Scholar 

  33. Pugachev, O.N., Parasitic fauna of sucker (Catostomus catostomus) from the Kolyma River, Parazitologiya, 1980, vol. 14, no. 6, pp. 511–513.

    Google Scholar 

  34. Pugachev, O.N., Parazity presnovodnykh ryb severovostoka Azii (Parasites of Freshwater Fish of North-East Asia), Leningrad: Zool. Inst. Akad. Nauk SSSR, 1984.

    Google Scholar 

  35. Lastochkin, A.N., Submarine valleys of the northern continental shelf of Eurasia, Izv. Vses. Geogr. O-va, 1977, vol. 109, no. 5, pp. 412–417.

    Google Scholar 

  36. Hopkins, D.M., The paleogeography and climatic history of Beringia during late Cenozoic time, Internord, 1972, vol. 12, pp. 121–150.

    Google Scholar 

  37. Dort-Gol’ts, Yu.E. and Terekhova, V.E., Beringiya v kainozoe (Beringia in Cenozoic Era), Vladivostok: Dal’nevost. Nauchn. Tsentr Akad. Nauk SSSR, 1976.

    Google Scholar 

  38. Kartavtsev, Yu.Ph. and Li, J.-S., Analysis of nucleotide diversity at the cytochrome b and cytochrome oxidase 1 genes at the population, species, and genus levels, Russ. J. Genet., 2006, vol. 42, no. 4, pp. 341–362.

    Article  CAS  Google Scholar 

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Correspondence to L. T. Bachevskaja.

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Original Russian Text © L.T. Bachevskaja, V.V. Pereverzeva, G.D. Ivanova, G.A. Agapova, 2014, published in Genetika, 2014, Vol. 50, No. 10, pp. 1216–1221.

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Bachevskaja, L.T., Pereverzeva, V.V., Ivanova, G.D. et al. Nucleotide variation in the mitochondrial DNA cytochrome oxidase 1 gene in the Siberian sucker (Catostomus catostomus rostratus) from Kolyma River. Russ J Genet 50, 1075–1080 (2014). https://doi.org/10.1134/S1022795414100019

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