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Variability of Composition of Microbiota of Gastrointestinal Tract of Perch Perca fluviatilis and Prussian Carp Carassius gibelio During the Vegetative Season

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Abstract

The composition of the microbiota of the digestive tract of two fish species differing in feeding habits—perch Perca fluviatilis and Prussian carp Carassius gibelio from Malye Chany Lake (West Siberia) was studied by sequencing of the V3–V4 region of the 16S ribosomal RNA gene using the Illumina MiSeq platform. During the vegetative season, the composition of the gastrointestinal microbiota of the studied species had varied with the highest diversity of bacteria in the gastrointestinal tract of perch in spring, while in the intestine of Prussian carp in spring and autumn. The perch gastrointestinal microbiota was dominated by Sediminibacterium, unclassified and uncultivated Chitinophagaceae, Sphingomonas, Caulobacter, Phyllobacterium, Haematospirillum, Cetobacterium, Vibrio, Aeromonas, and Plesiomonas; in Prussian carp, Sediminibacterium, unclassified Vibrionaceae and Chitinophagaceae, Sphingomonas, Caulobacter, Vibrio and Aeromonas. It is assumed that changes in the composition of microbial communities during the vegetative season are associated with the seasonal changes in water temperature and food resources of the lake.

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Funding

The study was financially supported by the Russian Foundation for Basic Research, project no. 18-34-20122.

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Authors and Affiliations

  1. Institute of Systematics and Ecology of Animals, Siberian Branch of Russian Academy of Sciences (ISEA SB RAS), Novosibirsk, Russia

    E. N. Kashinskaya, E. P. Simonov & M. M. Solovyev

  2. University of Tyumen, Tyumen, Russia

    E. P. Simonov

  3. Tomsk State University, Tomsk, Russia

    M. M. Solovyev

  4. Papanin Institute of Biology of Inland Waters, Russian Academy of Sciences, Borok, Russia

    G. I. Izvekova

  5. Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences (ICBFM SB RAS), Novosibirsk, Russia

    O. A. Baturina

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  1. E. N. Kashinskaya
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Kashinskaya, E.N., Simonov, E.P., Izvekova, G.I. et al. Variability of Composition of Microbiota of Gastrointestinal Tract of Perch Perca fluviatilis and Prussian Carp Carassius gibelio During the Vegetative Season. J. Ichthyol. 61, 955–971 (2021). https://doi.org/10.1134/S0032945221060060

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