Abstract
Flower development exists as a key period in the angiosperms life cycle and the proper development is considered with its reproductive success. Pistil abortion is one of the widely distributed aspects of berry plants and its basic mechanism in Japanese apricot is quite unclear and needs thorough investigation. The present study was carried out to get a deep insight into the pistil abortion mechanism in Japanese apricot using a transcriptomic approach. A large number of DEGs were identified from different development stages of normal and abortive pistils. Pair-wise comparison analysis was performed as LY1 vs DQD1, LY2 vs DQD2, and LY3 vs DQD3 and produced 3590, 2085, and 2286 transcripts, respectively. The Gene Ontology (GO) showed that different metabolic processes, plant hormones, developmental processes, and photosystem-related genes were involved in pistil abortion. The pathway analysis revealed significant enrichment of plant hormone's signal transduction and circadian rhythm pathways. Furthermore, transcription factors such as MYB, MADS-box, and NAC family showed lower expression in abortive pistils. The current study presents a new strategy for advanced research and understanding of the pistil abortion process in Japanese apricot and provides a possible reference for other deciduous fruit trees.
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Data availability
The sequencing data were deposited to NCBI-GEO under the accession numbers GSE141096.
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Acknowledgements
This study was supported by the National Natural Science Foundation of China (31772282 and 31971703), the National Key Research and Development Program of China (2018YFD1000107), China Postdoctoral Science Foundation (2018 M640497), and Jiangsu Postdoctoral Science Research Foundation (2018K216C) for funding this research in materials collection, data analysis, and experiment.
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ZG and SI conceived and designed the study. SI performed the experiment, analyzed data and wrote the whole manuscript. NX, BY. FH and ZP assist in sample collection and data analysis. ST and SA and DC revised the manuscript. All authors read and approved the final version of the manuscript.
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Iqbal, S., Pan, Z., Hayat, F. et al. Comprehensive transcriptome profiling to identify genes involved in pistil abortion of Japanese apricot. Physiol Mol Biol Plants 27, 1191–1204 (2021). https://doi.org/10.1007/s12298-021-01019-w
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DOI: https://doi.org/10.1007/s12298-021-01019-w