Abstract
Aims
The gradual decline in rice yield is a trend closely related to the occurrence of various pathogens, especially Pythium graminicola and Rhizoctonia solani; these are major soil-borne pathogens that cause the plant disease damping-off, which seriously damages seed germination and growth worldwide.
Methods
After treatment with P. graminicola and Rhophitulus solani in 120 Cheongcheong/Nagdong double haploid (CNDH) populations, they were divided into a resistant group and a susceptible group, and finally the damping-off resistance gene was mapped using the genotype and phenotype. And then, the expression level of OsDGTq1 screened was analyzed.
Results
Using the genotypes/phenotypes of the 120 CNDH populations, loci that induced resistance to P. graminicola and R. solani were detected simultaneously in RM11849-RM212 on chromosome 1 and RM27242-RM2698 on chromosome 11. In these areas, open reading frames related to the cell wall, cell death, signaling, and secondary metabolites affecting plant defense were searched. The relative expression levels of these open reading frames were analyzed after P. graminicola and R. solani inoculation; OsDGTq1 expression increased sharply in the resistance population relative to the susceptible population at the initial stage after pathogen inoculation.
Conclusions
These results suggest that OsDGTq1 reacts rapidly to the initial stage of inoculation when pathogens attack and is involved in cell wall synthesis, which induces systemic acquired resistance. Hence, OsDGTq1 could potentially be used to develop damping-off resistant rice cultivars that improve yield at the early stages of rice growth.
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Data availability
The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.
Code availability
Not applicable.
Change history
11 March 2022
A Correction to this paper has been published: https://doi.org/10.1007/s11104-022-05361-0
References
Akai S (2012) Histology of defense in plants. In Plant Pathology. An Adv Treat eds J Horsfall and E B Cowling (vol. 1) New York, NY, Springer, pp 391–434
Al-Abdalall AHA (2010) Assessment of yield loss caused by root rots in wheat and barley. J Food, Agric Environ 8:638–641
Armanhi JSL, de Souza RSC, Biazotti BB et al (2021) Modulating drought stress response of maize by a synthetic bacterial community. Front Microbiol 12. https://doi.org/10.3389/fmicb.2021.747541
Bellincampi D, Cervone F, Lionetti V (2014) Plant cell wall dynamics and wall-related susceptibility in plant-pathogen interactions. Front Plant Sci 5:1–8. https://doi.org/10.3389/fpls.2014.00228
Bennett AJ, Bending GD, Chandler D et al (2012) Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations. Biol Rev 87:52–71. https://doi.org/10.1111/j.1469-185X.2011.00184.x
Chen H, Cao S, Fang X et al (2015) Changes in fruit firmness, cell wall composition and cell wall degrading enzymes in postharvest blueberries during storage. Sci Hortic (Amsterdam) 188:44–48. https://doi.org/10.1016/j.scienta.2015.03.018
Cocuron JC, Lerouxel O, Drakakaki G et al (2007) A gene from the cellulose synthase-like C family encodes a β-1,4 glucan synthase. Proc Natl Acad Sci U S A 104:8550–8555. https://doi.org/10.1073/pnas.0703133104
Cosgrove DJ (2005) Growth of the plant cell wall. Nat Rev Mol Cell Biol 6:850–861. https://doi.org/10.1038/nrm1746
Coutinho PM, Deleury E, Davies GJ, Henrissat B (2003) An evolving hierarchical family classification for glycosyltransferases. J Mol Biol 328:307–317. https://doi.org/10.1016/S0022-2836(03)00307-3
Gao S, Wu H, Wang W et al (2013) Efficient colonization and harpins mediated enhancement in growth and biocontrol of wilt disease in tomato by Bacillus subtilis. Lett Appl Microbiol 57:526–533. https://doi.org/10.1111/lam.12144
Jirage D, Tootle TL, Reuber TL et al (1999) Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling. Proc Natl Acad Sci U S A 96:13583–13588. https://doi.org/10.1073/pnas.96.23.13583
Jones AM (2001) Programmed cell death in development and defense. Plant Pathol 125:94–97. https://doi.org/10.1387/ijdb.150168md
Kashyap A, Planas-Marquès M, Capellades M et al (2021) Blocking intruders: inducible physico-chemical barriers against plant vascular wilt pathogens. J Exp Bot 72:184–198. https://doi.org/10.1093/jxb/eraa444
Keen NT (1990) Gene-for-gene complementarity in plant-pathogen interactions. Annu Rev Genet 24:447–463
Kim ST, Yu S, Kang YH et al (2008) The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity. Plant Cell Rep 27:593–603. https://doi.org/10.1007/s00299-007-0485-6
Lamichhane JR, Dachbrodt-Saaydeh S, Kudsk P, Messéan A (2016) Toward a reduced reliance on conventional pesticides in European agriculture. Plant Dis 100:10–24
Lamichhane JR, Dürr C, Schwanck AA et al (2017) Integrated management of damping-off diseases. A review. Agron Sustain Dev:37. https://doi.org/10.1007/s13593-017-0417-y
Lander ES, Botstein S (1989) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185. https://doi.org/10.1093/genetics/121.1.185
Lee J, Bricker TM, Lefevre M et al (2006) Proteomic and genetic approaches to identifying defence-related proteins in rice challenged with the fungal pathogen Rhizoctonia solani. Mol Plant Pathol 7:405–416. https://doi.org/10.1111/j.1364-3703.2006.00350.x
Lefevere H, Bauters L, Gheysen G (2020) Salicylic acid biosynthesis in plants. Front Plant Sci 11:1–7. https://doi.org/10.3389/fpls.2020.00338
Lerouxel O, Cavalier DM, Liepman AH, Keegstra K (2006) Biosynthesis of plant cell wall polysaccharides - a complex process. Curr Opin Plant Biol 9:621–630. https://doi.org/10.1016/j.pbi.2006.09.009
Lincoln S (1992) Construcing genetic maps with MAPMAKER/EXP 3.0. Whitehead institute technical report
Lynch M, Walsh B (1998) Genetics and Analysis of Quantitative Traits. Sinauer Associates Inc., Sunderland, MA
Malinova I, Kunz HH, Alseekh S et al (2014) Reduction of the cytosolic phosphoglucomutase in Arabidopsis reveals impact on plant growth, seed and root development, and carbohydrate partitioning. PLoS One 9:e112468
McCouch SR (2008) Gene nomenclature system for rice. Rice 1:72–84. https://doi.org/10.1007/s12284-008-9004-9
Menzies JD (1963) Survival of microbial plant pathogens in soil. Bot Rev 29:79–122
Mouttet R, Escobar-Gutiérrez A, Esquibet M et al (2014) Banning of methyl bromide for seed treatment: could Ditylenchus dipsaci again become a major threat to alfalfa production in Europe? Pest Manag Sci 70:1017–1022. https://doi.org/10.1002/ps.3745
Nejat N, Rookes J, Mantri NL, Cahill DM (2017) Plant–pathogen interactions: toward development of next-generation disease-resistant plants. Crit Rev Biotechnol 37:229–237. https://doi.org/10.3109/07388551.2015.1134437
O’Neill MA, York WS (2003) The composition and structure of plant primary cell walls. In The Plant Cell Wall, J.K.C. Rose, ed Boca Raton, FL: CCRC Press, pp 1–54
Pino-Otín MR, Ballestero D, Navarro E et al (2021) Effects of the insecticide fipronil in freshwater model organisms and microbial and periphyton communities. Sci Total Environ 764:142820. https://doi.org/10.1016/j.scitotenv.2020.142820
Proels RK, Hückelhoven R (2014) Cell-wall invertases, key enzymes in the modulation of plant metabolism during defence responses. Mol Plant Pathol 15:858–864. https://doi.org/10.1111/mpp.12139
Ren Z, Poopal RK, Ramesh M (2021) Synthetic organic chemicals (flame retardants and pesticides) with neurotoxic potential induced behavioral impairment on zebrafish (Danio rerio): a non-invasive approach for neurotoxicology. Environ Sci Pollut Res 28:37534–37546. https://doi.org/10.1007/s11356-021-13370-2
Rennie EA, Hansen SF, Baidoo EEK et al (2012) Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases. Plant Physiol 159:1408–1417. https://doi.org/10.1104/pp.112.200964
Sugano S, Jiang CJ, Miyazawa SI et al (2010) Role of OsNPR1 in rice defense program as revealed by genomewide expression analysis. Plant Mol Biol 74:549–562. https://doi.org/10.1007/s11103-010-9695-3
Van Buyten E, Banaay CGB, Vera Cruz C, Höfte M (2013) Identity and variability of Pythium species associated with yield decline in aerobic rice cultivation in the Philippines. Plant Pathol 62:139–153. https://doi.org/10.1111/j.1365-3059.2012.02607.x
Verbeek REM, Banaay CGB, Sikder M et al (2016) Interactions between the oomycete Pythium arrhenomanes and the rice root-knot nematode Meloidogyne graminicola in aerobic Asian rice varieties. Rice 9. https://doi.org/10.1186/s12284-016-0108-3
Wang J, Hou B (2009) Glycosyltransferases: key players involved in the modification of plant secondary metabolites. Front Biol China 4:39–46. https://doi.org/10.1007/s11515-008-0111-1
Wang S, Basten CJ, Zeng ZB (2012) Windows QTL Cartographer 2.5. Department of Statistics, North Carol, Raleigh
Wright E (1957) Influence of temperature and moisture on damping-off of American and Siberian elm, black locust, and desertwillow. Phytopathology 47:658–662
Xiao W, Liu H, Li Y et al (2009) A rice gene of de novo origin negatively regulates pathogen-induced defense response. PLoS One 4:1–12. https://doi.org/10.1371/journal.pone.0004603
Yin Y, Chen H, Hahn MG et al (2010) Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8. Plant Physiol 153:1729–1746. https://doi.org/10.1104/pp.110.154229
Zeng Z (1994) Precision of quantitative trait loci. Genetics 136:1457–1468
Zeng J, Zhang T, Huangfu J et al (2021) Both allene oxide synthases genes are involved in the biosynthesis of herbivore-induced jasmonic acid and herbivore resistance in rice. Plants 10:1–14. https://doi.org/10.3390/plants10030442
Acknowledgements
This work was supported by a grant from the New Breeding Technologies Development Program (Project No. PJ016531012022), Rural Development Administration, Republic of Korea.
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JRP and EGK conceptualization of experiments. JRP and EGK methodology and research plan. JRP formal analysis. JRP and YHJ investigation of the experiments. JRP writing the original draft. JRP and EGK writing, review, and editing. BJY and KMK supervised the study. All authors read and approved the final article.
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Park, JR., Kim, EG., Jang, YH. et al. Selection strategy for damping-off resistance gene by biotechnology in rice plant. Plant Soil 474, 277–296 (2022). https://doi.org/10.1007/s11104-022-05334-3
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DOI: https://doi.org/10.1007/s11104-022-05334-3