Abstract
Soybean [Glycine max (L.) Merr.] is an important crop which contributes approximately 58% of the world’s oilseed production. Palmitic and stearic acids are the two main saturated fatty acids in soybean oil. Different levels of saturated fatty acids are desired depending on the uses of the soybean oil. Vegetable oil low in saturated fatty acids is preferred for human consumption, while for industrial applications, soybean oil with higher levels of saturated fatty acids is more suitable. The objectives of this study were to identify quantitative trait loci (QTL) for saturated fatty acids, analyze the genetic effects of single QTL and QTL combinations, and discuss the potential of marker-assisted selection in soybean breeding for modified saturated fatty acid profiles. A population of recombinant inbred lines derived from the cross of SD02-4-59 × A02-381100 was grown in five environments and the seed samples from each environment were evaluated for fatty acid content. Genotyping of the population was performed with 516 polymorphic single nucleotide polymorphism markers and 298 polymorphic simple sequence repeat markers. Eight QTL for palmitic acid, five QTL for stearic acid and nine QTL for total saturated fatty acids were detected by composite interval mapping and/or interval mapping, with a high level of consistency or repeatability in multiple environments. Most of these QTL have not been reported previously, with the exception of qPAL-A1 which confirmed the result of a previous study. Significant QTL × QTL interactions were not detected. However, significant QTL × environment interactions were detected in most cases. Comparisons of two-locus and three-locus combinations indicated that cumulative effects of QTL were significant for both palmitic and stearic acids. QTL pyramiding by molecular marker-assisted selection would be an appropriate strategy for improvement of saturated fatty acids in soybean.
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References
Beavis WD (1994) The power and deceit of QTL experiments: lessons from comparative QTL studies. In: 49th annual corn and sorghum industry research conference. American Seed Trade Association, Washington, DC
Bubeck DM, Fehr WR, Hammond EG (1989) Inheritance of palmitic and stearic acid mutants of soybean. Crop Sci 29:652–656
Burton JW, Wilson RF, Brim CA (1983) Recurrent selection in soybeans: IV. Selection for increased oleic acid percentage in seed oil. Crop Sci 23:744–747
Burton JW, Wilson RF, Brim CA (1994) Registration of N79–2077-12 and N87–2122-4, two soybean germplasm lines with reduced palmitic acid in seed oil. Crop Sci 34:313
Cardinal AJ, Burton JW, Camacho-Roger AM, Yang JH, Wilson RF, Dewey RE (2007) Molecular analysis of soybean lines with low palmitic acid content in the seed oil. Crop Sci 47:304–310
Diers BW, Shoemaker RC (1992) Restriction fragment length polymorphism analysis of soybean fatty acid content. J Am Oil Chem Soc 69:1242–1244
Erickson EA, Wilcox JR, Cavins JF (1988) Inheritance of altered palmitic acid percentage in two soybean mutants. J Hered 79:465–468
Fasoula VA, Harris DK, Boerma HR (2004) Validation and designation of quantitative trait loci for seed protein, seed oil, and seed weight from two soybean populations. Crop Sci 44:1218–1225
Fehr WR (1987) Principles of cultivar development—volume 1, theory and technique. Macmillan Publishing Company, New York
Hammond EG, Fehr WR (1983) Registration of A6 germplasm line of soybean. Crop Sci 23:192–193
Henderson MM (1991) Correlations between fatty acid intake and cancer incidence. In: Nelson GJ (ed) Health effects of dietary fatty acids. AOCS, Champaign, IL, p 136
Hu FB, Stampfer MJ, Manson JE, Rimm E, Colditz GA, Rosner BA, Hennekens CH, Willett WC (1997) Dietary fat intake and the risk of coronary heart disease in women. N Engl J Med 337:1491–1499
Huang N, Angeles ER, Domingo J, Magpantay G, Singh S, Zang G, Kumaravadivel N, Bennet J, Khush GS (1997) Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theor Appl Genet 95:313–320
Hyten DL, Pantalone VR, Sams CE, Saxton AM, Landau-Ellis D, Stefaniak TR, Schmidt ME (2004a) Seed quality QTL in a prominent soybean population. Theor Appl Genet 109:552–561
Hyten DL, Pantalone VR, Saxton AM, Schmidt ME, Sams CE (2004b) Molecular mapping and identification of soybean fatty acid modifier quantitative trait loci. J Am Oil Chem Soc 81:1115–1118
Hyten DL, Choi IY, Song QJ, Specht JE, Carter TE, Shoemaker RC, Hwang EY, Matukumalli LK, Cregan PB (2010) A high density integrated genetic linkage map of soybean and the development of a 1,536 Universal Soy Linkage Panel for QTL mapping. Crop Sci 50:960–968
Jiang G-L, Shi JR, Ward RW (2007) QTL analysis of resistance to Fusarium head blight in the novel wheat germplasm CJ 9306. I. Resistance to fungal spread. Theor Appl Genet 116:3–13
Keim P, Olson TC, Shoemaker RC (1998) A rapid protocol for isolating soybean DNA. Soybean Genet Newsl 15:150–152
Lark KG, Chase K, Adler F, Mansur LM, Orf JH (1995) Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another. Proc Natl Acad Sci USA 92:4656–4660
Li Z, Wilson RF, Rayford WE, Boerma HR (2002) Molecular mapping genes conditioning reduced palmitic acid content in N87–2122-4 soybean. Crop Sci 42:373–378
Li X, Han Y, Teng W, Zhang S, Yu K, Poysa V, Anderson T, Ding J, Li W (2010) Pyramided QTL underlying tolerance to Phytophthora root rot in mega-environment from soybean cultivars ‘conrad’ and ‘Hefeng 25’. Theor Appl Genet 121:651–658
List GR, Steidley KR, Neff WE (2000) Commercial spreads formulation structure and properties. Inform 11:980–986
Mounts TL, Warner K, List GR, Kleiman R, Fehr WR, Hammond EG, Wilcox JR (1988) Effect of altered fatty acid composition on soybean oil stability. J Am Oil Chem Soc 65:624–628
Nickell AD, Wilcox JR, Cavins JF (1991) Genetic relationships between loci controlling palmitic and linolenic acids in soybean. Crop Sci 31:1169–1171
Njiti VN, Johnson JE, Torto TA, Gray LE, Lightfoot DA (2001) Inoculum rate influences selection for field resistance to soybean sudden death syndrome in the greenhouse. Crop Sci 41:1726–1731
Njiti VN, Meksem K, Iqbal MJ, Johnson JE, Kassem MA, Zobrist KF, Kilo VY, Lightfoot DA (2002) Common loci underlie field resistance to soybean sudden death syndrome in Forrest, Pyramid, Essex, and Douglas. Theor Appl Genet 104:294–300
Oliva ML, Shannon JG, Sleper DA, Ellersieck MR, Cardinal AJ, Paris RL, Lee JD (2006) Stability of fatty acid profile in soybean genotypes with modified seed oil composition. Crop Sci 46:2069–2075
Orf JH, Chase K, Adler FR, Mansur LM, Lark KG (1999) Genetics of soybean agronomic traits: II. Interaction between yield quantitative trait loci in soybean. Crop Sci 39:1652–1657
Pantalone VR, Wilson RF, Novitzky WP, Burton JW (2002) Genetic regulation of elevated stearic acid concentration in soybean oil. J Am Oil Chem Soc 79:549–553
Panthee DR, Pantalone VR, Saxton AM (2006) Modifier QTL for fatty acid composition in soybean oil. Euphytica 152:67–73
Primomo VS, Falk DE, Ablett GR, Tanner JW, Rajcan I (2002) Inheritance and interaction of low palmitic and low linolenic soybean. Crop Sci 42:31–36
Primomo VS, Poysa VW, Ablett GR, Jackson C, Gijzen M, Rajcan I (2005) Mapping QTL for individual and total isoflavone content in soybean seeds. Crop Sci 45:2454–2464
Reinprecht Y, Poysa VW, Yu K, Rajcan I, Ablett GR, Pauls KP (2006) Seed and agronomic QTL in low linolenic acid, lipoxygenase-free soybean (Glycine max (L.) Merrill) germplasm. Genome 49:1510–1527
Richardson KL, Vales MI, Kling JG, Mundt CC, Hayes PM (2006) Pyramiding and dissecting disease resistance QTL to barley stripe rust. Theor Appl Genet 113:485–495
Schnebly SR, Fehr WR (1993) Effect of years and planting dates on fatty acid concentration of soybean genotypes. Crop Sci 33:716–719
Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109:122–128
Song Q, Jia G, Zhu Y, Grant D, Nelson RT, Hwang E-Y, Hyten DL, Cregan PB (2010) Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR_1.0) in soybean. Crop Sci 50:1950–1960
Spencer MM, Pantalone VR, Meyer EJ, Landau-Ellis D, Hyten DL (2003) Mapping of the Fas locus controlling stearic acid content in soybean. Theor Appl Genet 106:615–619
Stephen EL, Daly MJ, Lander ES (1993) Constructing genetic linkage maps with MapMaker/EXP 3.0—a tutorial and reference manual. Whitehead Institute for Biomedical Research, Cambridge, MA
Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205–233
Van Ooijen JW, Voorrips RE (2001) JoinMap 3.0: software for the calculation of genetic linkage maps. Plant research international, Wageningen
Voorrips RE (2002) MapChart 2.1. Plant Research International, Wageningen
Wang D, Shi J, Carlson SR, Cregan PB, Ward RW, Diers BW (2003) A low-cost, high-throughput polyacrylamide gel electrophoresis system for genotyping with microsatellite DNA markers. Crop Sci 43:1828–1832
Wang S, Basten CJ, Zeng ZB (2005) Windows QTL cartographer 2.5. Department of Statistics North Carolina State University, Raleigh, NC
Wang J, Li H, Zhang L, Li C, Meng L (2011) Users’ manual of QTL IciMapping v3.1. Institute of Crop Science, CAAS, Beijing, and Crop Research Informatics Lab, Mexico
White HB, Quackenbush FW, Probsr AH (1961) Occurrence and inheritance of linolenic and linoleic acids in soybean seeds. J Am Oil Chem Soc 38:113–117
Wilcox JR (2004) World distribution and trade of soybean. In: Boerma RH, Specht JE (eds) Soybeans: improvement, production, and uses, 3rd edn. American Society of Agronomy, Madison, WI, pp 1–13
Wilcox JR, Cavin JF (1990) Registration of C1726 and C1727 soybean germplasm with altered levels of palmitic acid. Crop Sci 30:240
Wilson RF (1987) Seed metabolism. In: Wilcox JR (ed) Soybean: improvement, production and uses, 2nd edn. ASA, CSSA, and SSSA, Madison, WI, pp 643–686
Wilson RF (2004) Seed composition. In: Boerma RH, Specht JE (eds) Soybeans: improvement, production, and uses, 3rd edn. American Society of Agronomy, Madison, WI, pp 621–669
Wilson RF, Burton J, Pantalone V, Dewey R (2002) New gene combinations governing saturated and unsaturated fatty acid composition in soybean. In: Kuo T, Gardner H (eds) Lipid biotechnology. Marcel Dekker, Inc., Basel, pp 95–113
Wolf RB, Cavins JF, Kleiman R, Black LT (1982) Effect of temperature on soybean seed constituents: oil, protein, moisture, fatty acids, amino acids and sugar. J Am Oil Chem Soc 59:230–232
Xie D, Han Y, Zeng Y, Chang W, Teng W, Li W (2011) SSR- and SNP-related QTL underlying linolenic acid and other fatty acid contents in soybean seeds across multiple environments. Mol Breeding. doi:10.1007/s11032-011-9607-5
Acknowledgments
This research was supported in part by USB Seed Composition Research project via USDA/ARS, South Dakota Soybean Research & Promotion Council project, USDA-NIFA Hatch project (SD00H374-10), and South Dakota Agricultural Experiment Station. The determination of fatty acids was completed in the USDA/ARS lab in Peoria, IL and the Iowa State University DNA Facility in Ames, IA. The parental line (A02-381100) was provided by Dr. Walter Fehr, Iowa State University.
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Wang, X., Jiang, GL., Green, M. et al. Quantitative trait locus analysis of saturated fatty acids in a population of recombinant inbred lines of soybean. Mol Breeding 30, 1163–1179 (2012). https://doi.org/10.1007/s11032-012-9704-0
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DOI: https://doi.org/10.1007/s11032-012-9704-0