Skip to main content
Log in

Seed quality QTL in a prominent soybean population

  • Original Paper
  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Abstract

Soybean [Glycine max (L.) Merr.] is a versatile crop due to its multitude of uses as a high protein meal and vegetable oil. Soybean seed traits such as seed protein and oil concentration and seed size are important quantitative traits. The objective of this study was to identify representative protein, oil, and seed size quantitative trait loci (QTL) in soybean. A recombinant inbred line (RIL) population consisting of 131 F6-derived lines was created from two prominent ancestors of North American soybeans (‘Essex’ and ‘Williams’) and the RILs were grown in six environments. One hundred simple sequence repeat (SSR) markers spaced throughout the genome were mapped in this population. There were a total of four protein, six oil, and seven seed size QTL found in this population. The QTL found in this study may assist breeders in marker-assisted selection (MAS) to retain current positive QTL in modern soybeans while simultaneously pyramiding additional QTL from new germplasm.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Basten CJ, Weir BS, Zeng Z-B (1994) Zmap-a QTL cartographer. In: Smith C, Gavora JS, Benkel B, Chesnais J, Fairfull W, Gibson JP, Kennedy BW, Burnside EB (eds) Proceedings of the 5th world congress on genetics applied to livestock production: computing strategies and software, vol 22. Guelph, Ontario, pp 65–66

  • Basten CJ, Weir BS, Zeng Z-B (2001) QTL Cartographer version 1.15. Department of Statistics, North Carolina State University, Raleigh

  • Bernard RL, Lindahl DA (1972) Registration of ‘Williams’ soybean. Crop Sci 12:716

    Google Scholar 

  • Brummer EC, Graef GL, Orf J, Wilcox JR, Shoemaker RC (1997) Mapping QTL for seed protein and oil content in eight soybean populations. Crop Sci 37:370–378

    Google Scholar 

  • Churchill G, Doerge R (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963–971

    CAS  PubMed  Google Scholar 

  • Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, Kaya N, Van Toai TT, Lohnaes DG, Chung T, Specht JE (1999) An integrated genetic linkage map of the soybean genome. Crop Sci 39:1464–1490

    CAS  Google Scholar 

  • Csanadi G, Vollmann J, Stift G, Lelley T (2001) Seed quality QTLs identified in a molecular map of early maturing soybean. Theor Appl Genet 103:912–919

    Article  CAS  Google Scholar 

  • Diers BW, Keim P, Fehr WR, Shoemaker RC (1992) RFLP analysis of soybean seed protein and oil content. Theor Appl Genet 83:608–612

    Google Scholar 

  • Gizlice Z, Carter TE Jr, Gerig TM, Burton JW (1996) Genetic diversity patterns in North American public soybean cultivars based on coefficient of parentage. Crop Sci 36:753–765

    Google Scholar 

  • Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage map of experimental and natural populations. Genomics 1:174–181

    CAS  PubMed  Google Scholar 

  • Lee SH, Bailey MA, Mian MAR, Carter TE, Shipe ER, Ashley DA, Parrott WA, Hussey RS, Boerma HR (1996) RFLP loci associated with soybean seed protein and oil content across populations and locations. Theor Appl Genet 93:649–657

    Google Scholar 

  • Lincoln SE, Daly MJ, Lander E (1992) Constructing genetic maps with MAPMAKER/EXP 3.0, 3rd edn. Whitehead Institute Technical Report

  • Liu K (1997) Soybeans: chemistry, technology and utilization. Chapman & Hall, New York, p 279

  • Mansur LM, Orf JH, Lark KG (1993) Determining the linkage of qualitative trait loci to RFLP markers using extreme phenotypes of recombinant inbreds of soybean (Glycine max L. Merr.) Theor Appl Genet 86:914–918

    Google Scholar 

  • Mansur LM, Orf JH, Chase K, Jarvik T, Cregan PB, Lark KG (1996) Genetic mapping of agronomic traits using recombinant inbred lines of soybean. Crop Sci 36:1327–1336

    CAS  Google Scholar 

  • Maughan PJ, Saghai-Maroof MA, Buss GR (1996) Molecular-marker analysis of seed-weight: genomic locations, gene action, and evidence for orthologous evolution among three legume species. Theor Appl Genet 93:574–579

    CAS  Google Scholar 

  • Mian AR, Bailey MA, Tamulonis JP, Shipe ER, Carter TE Jr, Parrott WA, Ashley DA, Hussey RS, Boerma HR (1996) Molecular markers associated with seed weight in two soybean populations. Theor Appl Genet 93:1011–1016

    CAS  Google Scholar 

  • Nyquist WE (1991) Estimation of heritablility and prediction of selection response in plant populations. Crit Rev Plant Sci 10:235–322

    Google Scholar 

  • Orf JH, Chase K, Jarvik T, Mansur LM, Cregan PB, Adler FR, Lark KG (1999) Genetics of soybean agronomic traits: I. comparison of three related recombinant inbred populations. Crop Sci 39:1642–1651

    Google Scholar 

  • Qui BX, Arelli PR, Sleper DA (1999) RFLP markers associated with soybean cyst nematode resistance and seed composition in a ‘Peking’ × ‘Essex’ population. Theor Appl Genet 98:356–364

    Article  Google Scholar 

  • Sebolt AM, Shoemaker RC, Diers BW (2000) Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean. Crop Sci 40:1438–1444

    CAS  Google Scholar 

  • Smith TJ, Camper HM (1973) Registration of ‘Essex’ soybean. Crop Sci 13:495

    Google Scholar 

  • Sneller CH (1994) Pedigree analysis of elite soybean lines. Crop Sci 34:1515–1522

    Google Scholar 

  • Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet (in press)

  • SoyBase (1995) A genome database for Glycine. http://www.SoyBase.org. Verified 21 October 2003

  • Specht JE, Chase K, Macrander M, Graef BL, Chung J, Markwell JP, Germann M, Orf JH, Lark KG (2001) Soybean response to water: a QTL analysis of drought tolerance. Crop Sci 41:493–509

    CAS  Google Scholar 

  • Vollmann J, Schausberger H, Bistrich H, Lelley T (2002) The presence or absence of the soybean Kunitz trypsin inhibitor as a quantitative trait locus for seed protein content. Plant Breed 121:272–274

    Article  CAS  Google Scholar 

  • Wang D, Shi J, Carlson SR, Cregan PB, Ward RW, Diers BW (2003) A low-cost, high-throughput polyacrylamide gel electrophoresis system for genotyping with microsatellite DNA markers. Crop Sci 43:1828–1832

    CAS  Google Scholar 

Download references

Acknowledgements

The authors would like to thank James H. Klein III (Southern Illinois University at Carbondale, Ill., USA), Donna Thomas (USDA Northern Regional Research Center at Peoria, Ill., USA), and Gordon G. Percell (WTES) for their technical support and Dr. Perry B. Cregan (USDA-ARS, Beltsville, Md., USA) for his suggestions. This research was supported by the United Soybean Board project no. 1240 and by the Tennessee Soybean Promotion Board.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to D. L. Hyten.

Additional information

Communicated by H.C. Becker

Rights and permissions

Reprints and permissions

About this article

Cite this article

Hyten, D.L., Pantalone, V.R., Sams, C.E. et al. Seed quality QTL in a prominent soybean population. Theor Appl Genet 109, 552–561 (2004). https://doi.org/10.1007/s00122-004-1661-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00122-004-1661-5

Keywords

Navigation