Abstract
Fission yeast is a single-cell eukaryote that has been used extensively as a model organism to study cell biology and virology of higher eukaryotes including plants and humans. In particular, it is a very well-tested model to study evolutionary highly conserved cellular activities such as cell proliferation, cell cycle regulation, and cell death. Some of the advantages of using fission yeast as a surrogate system: easy to carry out functional and genome-wide analysis of small viral genome, easy to maintain in the laboratory with a relatively short doubling time. It is genetically amendable and can be used to test the effect of gain-of-function or loss-of-function of a gene product. Here, we describe a streamlined and large-scale molecular cloning strategy for genome-wide characterization of small viruses in fission yeast.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Hartwell LH (2004) Yeast and cancer. Biosci Rep 24(4–5):523–544
Nasmyth K (2001) A prize for proliferation. Cell 107(6):689–701
Nurse PM (2002) Nobel lecture. Cyclin dependent kinases and cell cycle control. Biosci Rep 22(5–6):487–499
Ray K (2014) From fission to fusion: a perspective on the research that won the Nobel Prize in physiology or medicine, 2013. J Biosci 39(1):3–12
Zhao Y, Elder RT (2000) Yeast perspectives on HIV-1 VPR. Front Biosci 5:D905–D916
Zhao RY, Elder RT (2005) Viral infections and cell cycle G2/M regulation. Cell Res 15(3):143–149
Andreola ML, Litvak S (2012) Yeast and the AIDS virus: the odd couple. J Biomed Biotechnol 2012:549020
Lista MJ, Voisset C, Contesse MA, Friocourt G, Daskalogianni C, Bihel F, Fahraeus R, Blondel M (2015) The long-lasting love affair between the budding yeast Saccharomyces cerevisiae and the Epstein-Barr virus. Biotechnol J 10(11):1670–1681
Forsburg SL, Nurse P (1991) Cell cycle regulation in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Annu Rev Cell Biol 7:227–256. https://doi.org/10.1146/annurev.cb.07.110191.001303
Boye E, Anda S, Rothe C, Stokke T, Grallert B (2016) Analyzing Schizosaccharomyces pombe DNA content by flow cytometry. Cold Spring Harb Protoc 2016(6):520–524. https://doi.org/10.1101/pdb.prot091280
Li G, Poulsen M, Fenyvuesvolgyi C, Yashiroda Y, Yoshida M, Simard JM, Gallo RC, Zhao RY (2016) Charaterization of cytopathic effects through genome-wide analysis of the Zika virus proteins in fission yeast. Proc Natl Acad Sci U S A 114:376–384
Zhao Y, Elder RT, Chen M, Cao J (1998) Fission yeast expression vectors adapted for positive identification of gene insertion and green fluorescent protein fusion. Biotechniques 25(3):438–440, 442, 444
Huard S, Elder RT, Liang D, Li G, Zhao RY (2008) Human immunodeficiency virus type 1 Vpr induces cell cycle G2 arrest through Srk1/MK2-mediated phosphorylation of Cdc25. J Virol 82(6):2904–2917. https://doi.org/10.1128/JVI.01098-07
Matsuyama A, Arai R, Yashiroda Y, Shirai A, Kamata A, Sekido S, Kobayashi Y, Hashimoto A, Hamamoto M, Hiraoka Y, Horinouchi S, Yoshida M (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 24(7):841–847. https://doi.org/10.1038/nbt1222
Nkeze J, Li L, Benko Z, Li G, Zhao RY (2015) Molecular characterization of HIV-1 genome in fission yeast Schizosaccharomyces pombe. Cell Biosci 5:47. https://doi.org/10.1186/s13578-015-0037-7
Zhao RY, Wang DW (2006) BYDV MP is a viral determinant responsible for plant growth retardation. USA Patent US 12/097,215 Dec.13, 2006
Maundrell K (1990) nmt1 of fission yeast. A highly transcribed gene completely repressed by thiamine. J Biol Chem 265(19):10857–10864
Basi G, Schmid E, Maundrell K (1993) TATA box mutations in the Schizosaccharomyces pombe nmt1 promoter affect transcription efficiency but not the transcription start point or thiamine repressibility. Gene 123(1):131–136
Zhao Y, Lieberman HB (1995) Schizosaccharomyces pombe: a model for molecular studies of eukaryotic genes. DNA Cell Biol 14(5):359–371
Zhao Y, Cao J, O'Gorman MR, Yu M, Yogev R (1996) Effect of human immunodeficiency virus type 1 protein R (vpr) gene expression on basic cellular function of fission yeast Schizosaccharomyces pombe. J Virol 70(9):5821–5826
Li L (2008) Study of interaction of HIV proteins with host cells using a fission yeast model and potential strategy against HIV. PhD dissertation, Joint training of the Beijing Institute of Microbiology and Epidemiology (Jing-Yun Li) and University of Maryland School of Medicine (Richard Y. Zhao),
Antal J (2010) Genome-wide analysis of barley yellow drawf virus using a fission yeast model. Pathology. PhD project with joint training of University of Maryland School of Medicine (Richard Y. Zhao) and University of Pecs, Hungary (Miklos Pesti),
Moreno S, Klar A, Nurse P (1991) Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 194:795–823
Chen M, Elder RT, Yu M, O'Gorman MG, Selig L, Benarous R, Yamamoto A, Zhao Y (1999) Mutational analysis of Vpr-induced G2 arrest, nuclear localization, and cell death in fission yeast. J Virol 73(4):3236–3245
Zhao Y, Yu M, Chen M, Elder RT, Yamamoto A, Cao J (1998) Pleiotropic effects of HIV-1 protein R (Vpr) on morphogenesis and cell survival in fission yeast and antagonism by pentoxifylline. Virology 246(2):266–276. https://doi.org/10.1006/viro.1998.9208
Kucsera J, Yarita K, Takeo K (2000) Simple detection method for distinguishing dead and living yeast colonies. J Microbiol Methods 41(1):19–21
Benko Z, Elder RT, Li G, Liang D, Zhao RY (2016) HIV-1 Protease in the Fission Yeast Schizosaccharomyces pombe. PLoS One 11(3):e0151286. https://doi.org/10.1371/journal.pone.0151286
Benko Z, Elder RT, Liang D, Zhao RY (2010) Fission yeast as a HTS platform for molecular probes of HIV-1 Vpr-induced cell death. Int J High Throughput Screen 1:151–162
Cormack BP, Valdivia RH, Falkow S (1996) FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173(1):33–38
Olsson I, Bjerling P (2011) Advancing our understanding of functional genome organisation through studies in the fission yeast. Curr Genet 57(1):1–12. https://doi.org/10.1007/s00294-010-0327-x
Acknowledgments
This work is supported in part by an intramural fund from the University of Maryland Medical Center (R.Y.Z.).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Li, G., Zhao, R.Y. (2018). Molecular Cloning and Characterization of Small Viral Genome in Fission Yeast. In: Singleton, T. (eds) Schizosaccharomyces pombe. Methods in Molecular Biology, vol 1721. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7546-4_5
Download citation
DOI: https://doi.org/10.1007/978-1-4939-7546-4_5
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-7545-7
Online ISBN: 978-1-4939-7546-4
eBook Packages: Springer Protocols